Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A12 F114 I0 R1
|
92 |
803.2 |
28831534 |
98.5% |
28399060 |
140.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
4,397,727:1 |
+C |
100% |
coding (316/1848 nt) |
mutL → |
methyl‑directed mismatch repair protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,397,727 | 1 | . | C | 98.3%
| 2304.7
/ 23.1
| 630 | coding (316/1848 nt) | mutL | methyl‑directed mismatch repair protein |
| Reads supporting (aligned to +/- strand): ref base . (7/4); new base C (309/309); total (317/313) |
| Fisher's exact test for biased strand distribution p-value = 5.45e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
| Rejected as polymorphism: Frequency below/above cutoff threshold. |
| Rejected as polymorphism: Polymorphic indel expands or contracts a homopolymer stretch. |
Only 100 of 671 total aligned reads displayed.
TCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGTAAAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTT‑CCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAGGGCGCGATATGAACGTGACGGTAAAACCGGCGGCGCATCCTGTGGGGACGACGCTGGAGGTGCTGGATCTGTTCTACAAC > NC_000913/4397579‑4397870
|
gTGATAACGGCTGCGGTATCAAAAGAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGTAAAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTT‑cc < 3:1546809/149‑1 (MQ=255)
gTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGTAAAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTT‑cc < 2:5966520/149‑1 (MQ=255)
gATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGTAAAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTT‑cccc < 1:2913207/149‑2 (MQ=255)
gTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGTAAAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCAc > 4:5737416/1‑149 (MQ=255)
gTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGTAAAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCAc < 4:3295362/149‑1 (MQ=255)
tCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGTAAAATCGCCTCTCTGGACGATCTCGAAGCAATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTc > 4:142204/1‑149 (MQ=255)
aaaaaaGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGTAAAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACtt > 1:141558/1‑146 (MQ=255)
aaaaaaGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGTAAAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCAc < 3:6874964/149‑1 (MQ=255)
aaaaaGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGTAAAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACg > 3:6131527/1‑149 (MQ=255)
aaaGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGTAAAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCa < 4:405204/149‑1 (MQ=255)
gATGAGCTGGCGCTGGCGCTGGCTCAGCATGCCACCAGTAAAATCGCCTCTCTGGACGATCTCCAAGCCATTATTAGCCTCGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGATCGGCTTC‑CCCGCCTGACGCTCACTTCACGCACCg < 4:4417706/149‑1 (MQ=255)
aGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGTAAAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGa > 2:195650/1‑149 (MQ=255)
cgctggcgctggcTCGTCATGCCACCAGTAAAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAAcagca < 3:1174465/149‑1 (MQ=255)
ggcgctggcTCGTCATGCCACCAGTAAAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGaa < 1:1204284/149‑1 (MQ=255)
ggcgctggcTCGTCATGCCACCAGTAAAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGaa < 1:3240572/149‑1 (MQ=255)
cgctggcTCGTCATGCCACCAGTAAAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGc > 2:6437230/1‑149 (MQ=255)
ctggcTCGTCATGCCACCAGTAAAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGaa < 3:3533208/145‑1 (MQ=255)
ctggcTCGTCATGCCACCAGTAAAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGaa > 4:3533208/1‑145 (MQ=255)
ctggcTCGTCATGCCACCAGTAAAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCt < 1:2421307/149‑1 (MQ=255)
tggcTCGTCATGCCACCAGTAAAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTg > 1:1662943/1‑149 (MQ=255)
ggcTCGTCATGCCACCAGTAAAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTgg < 2:4895213/149‑1 (MQ=255)
ggcTCGTCATGCCACCAGTAAAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTgg > 3:930596/1‑149 (MQ=255)
tCGTCATGCCACCAGTAAAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAg > 1:872671/1‑149 (MQ=255)
cGTCATGCCACCAGTAAAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAgg < 4:5322647/149‑1 (MQ=255)
gTCATGCCACCAGTAAAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGc < 4:6112509/149‑1 (MQ=255)
cATGCCACCAGTAAAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCt < 1:5727345/149‑1 (MQ=255)
aTGCCACCAGTAAAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTa > 1:4613893/1‑149 (MQ=255)
accaGTAAAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCg > 2:2315684/1‑149 (MQ=255)
caGTAAAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGaa > 1:4167254/1‑149 (MQ=255)
caGTAAAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCGCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGaa < 4:6522763/149‑1 (MQ=255)
aGTAAAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCAc < 3:2463792/107‑1 (MQ=255)
gTAAAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAgg < 3:5061192/149‑1 (MQ=255)
tAAAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAggg > 3:6468944/1‑149 (MQ=255)
aaTCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAGGgcgc < 1:3602230/149‑1 (MQ=255)
aaTCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAGGgcgc < 4:1743021/149‑1 (MQ=255)
aaTCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAGGgcgc > 3:4359089/1‑149 (MQ=255)
aaTCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAGGgcgc < 1:4923027/149‑1 (MQ=255)
tCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAGGGCGCGa < 1:2691256/149‑1 (MQ=255)
tCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAGGGCGCGa > 4:5184572/1‑149 (MQ=255)
gCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAGGGCGCGata < 2:4425261/149‑1 (MQ=255)
ccTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAGGGCGCGatat > 4:2551586/1‑149 (MQ=255)
ccTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAGGGCGCGatat < 3:2804348/149‑1 (MQ=255)
ccTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAGGGCGCGatat > 1:4334903/1‑149 (MQ=255)
tctctGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAGGGCGCGATATGa > 2:7241261/1‑149 (MQ=255)
ctctGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCGGGAAGCCTGGCAGGCCTATGCCGAAGGGCGTGATGTGaa > 4:5997164/1‑149 (MQ=255)
tctGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAGGGCGCGATATGAAc < 4:2069126/149‑1 (MQ=255)
gaggcGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAGGGCGCGATATGAACGt < 1:2060506/145‑1 (MQ=255)
ggACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCGTGGCAGGCCTATGCCGAAGGGCGCGATATGAACGTg < 3:4628795/149‑1 (MQ=255)
gACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAGGGCGCGATATGAACGTGa < 2:5434779/149‑1 (MQ=255)
gACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAGGGCGCGATATGAACGTGa > 1:5441126/1‑149 (MQ=255)
gATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGaa > 3:32823/1‑127 (MQ=255)
gATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAGGGCGCGATATGAACGTGACgg > 3:1474283/1‑149 (MQ=255)
aTCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAGGGCGCGATATGAACGTGACGGt < 4:3405002/149‑1 (MQ=255)
aTCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAGGGCGCGATATGAACGTGACGGt > 2:3143582/1‑149 (MQ=255)
gAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAGGGCGCGATATGAACGTGACGGTAAAAc > 3:5835644/1‑149 (MQ=255)
gCCATTATCAGCCTGGGCTTTCGTGGTGAGGCGCTGGCGTGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTGACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAGGGCGCGATATGAACGTGACGGTAAAACcgg > 2:772531/1‑149 (MQ=255)
ttATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAGGGCGCGATATGAACGTGACGGTAAAACCggcggc > 3:5403853/1‑149 (MQ=255)
tATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAGGGCGCGATATGAACGTGACGGTAAAACCGgcggcg > 2:1536813/1‑149 (MQ=255)
tCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAGGGCGCGATATGAACGTGACGGTAAAACCGGCGGCGCa > 3:415895/1‑149 (MQ=255)
aGCCTGGGCATTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAGGGCGCGATATGAACCTGACGGTAAAACCGGCGGCGCATc < 3:6011467/149‑1 (MQ=255)
gCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAGGGCGCGATATGAACGTGACGGTAAAACCGGCGGCGCATcc < 2:2633913/149‑1 (MQ=255)
ccTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAGGGCGCGATATGAACGTGACGGTAAAACCGGCGGCGCATCCt > 4:1932128/1‑149 (MQ=255)
ccTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAGGGCGCGATATGAACGTGACGGTAAAACCGGCGGCGCATCCt < 2:4657340/149‑1 (MQ=255)
tGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAGGGCGCGATATGAACGTGACGGTAAAACCGGCGGCGCATCCtgt < 1:594573/149‑1 (MQ=255)
ggCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAGGGCGCGATATGAACGTGACGGTAAAACCGGCGGCGCATCCTGTgg < 1:6437230/149‑1 (MQ=255)
gCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAGGGCGCGATATGAACGTGACGGTAAAACCGGCGGCGCATCCTGTggg < 3:3930558/149‑1 (MQ=255)
tttCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAGGGCGCGATATGAACGTGACGGTAAAACCGGCGGCGCATCCTGTGGGga > 1:5199510/1‑149 (MQ=255)
tttCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAGGGCGCGATATGAACGTGACGGTAAAACCGGCGGCGCATCCTGTGGGga > 1:3935357/1‑149 (MQ=255)
tttCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAGGGCGCGATATGAACGTGACGGTAAAACCGGCGGCGCATCCTGTGGGga < 2:3579163/149‑1 (MQ=255)
tGAGGCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAGGGCGCGATATGAACGTGACGGTAAAACCGGCGGCGCATCCTGTGGGGACGACGCTg < 4:88593/149‑1 (MQ=255)
ggCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGATGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAGGGCGCGATATGAACGTGACGGTAAAACCGGCGGCGCATCCTGTGGGGACGACGCTGGAg < 4:4831740/149‑1 (MQ=255)
ggCGCTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAGGGCGCGATATGAACGTGACGGTAAAACCGGCGGCGCATCCTGTGGGGACGACGCTGGAg < 3:1853623/149‑1 (MQ=255)
gcgcTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAGGGCGCGATATGAACGTGACGGTAAAACCGGCGGCGCATCCTGTGGGGACGACGCTGGAgg > 2:877697/1‑149 (MQ=255)
gcgcTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAGGGCGCGATATGAACGTGACGGTAAAACCGGCGGCGCATCCTGTGGGGACGACGCTGGAgg > 4:2823886/1‑149 (MQ=255)
gcTGGCGAGTATCAGTTAGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAGGGCGCGATATGAACGTGACGGTAAAACCGGCGGCGCATCCTGTGGGGACGACGCTGGAGGTg < 2:6742099/149‑1 (MQ=255)
cTGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAGGGCGCGATATGAACGTGACGGTAAAACCGGCGGCGCATCCTGTGGGGACGACGCTGGAGGTGc < 4:2197423/149‑1 (MQ=255)
tGGCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAGGGCGCGATATGAACGTGACGGTAAAACCGGCGGCGCATCCTGTGGGGACGACGCTGGAGGTGCt < 3:2170241/149‑1 (MQ=255)
gCGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAGGGCGCGATATGAACGTGACGGTAAAACCGGCGGCGCATCCTGTGGGGACGACGCTGGAGGTGCTgg > 1:1031043/1‑149 (MQ=255)
cGAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAGGGCGCGATATGAACGTGACGGTAAAACCGGCGGCGCATCCTGTGGGGACGACGCTGGAGGTGCTGGa > 4:6982823/1‑149 (MQ=255)
gAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAGGGCGCGATATGAACGTGACGGTAAAACCGGCGGCGCATCCTGTGGGGACGACGCTGGAg > 1:1823488/1‑140 (MQ=255)
gAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAGGGCGCGATATGAACGTGACGGTAAAACCGGCGGCGCATCCTGTGGGGACGACGCTGGAGGTGCTGGAt < 3:662631/149‑1 (MQ=255)
gAGTATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAGGGCGCGATATGAACGTGACGGTAAAACCGGCGGCGCATCCTGTGGGGACGACGCTGGAGGTGCTGGAt < 2:1302607/149‑1 (MQ=255)
tATCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAAc > 1:6695313/1‑48 (MQ=255)
aTCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAGGGCGCGATATGAACGTGACGGTAAAACCGGCGGCGCATCCTGTGGGGACGACGCTGGAGGTGCTGGATCTGt < 1:719690/149‑1 (MQ=255)
tCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAGGGCGCGATATGAACGTGACGGTAAAACCGGCGGCGCATCCTGTGGGGACGACGCTGGAGGTGCTGGATCTGtt > 1:3406354/1‑149 (MQ=255)
tCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAGGGCGCGATATGAACGTGACGGTAAAACCGGCGGCGCATCCTGTGGGGACGACGCTGGAGGTGCTGGATCTGtt < 3:567204/149‑1 (MQ=255)
tCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAGGGCGCGATATGAACGTGACGGTAAAACCGGCGGCGCATCCTGTGGGGACGACGCTGGAGGTGCTGGATCTGtt < 3:5197241/149‑1 (MQ=255)
tCAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAGGGCGCGATATGAACGTGACGGTAAAACCGGCGGCGCATCCTGTGGGGACGACGCTGGAGGTGCTGGATCTGtt < 2:5217367/149‑1 (MQ=255)
cAGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAGGGCGCGATATGAACGTGACGGTAAAACCGGCGGCGCATCCTGTGGGGACGACGCTGGAGGTGCTGGATCTGTTc > 2:331683/1‑149 (MQ=255)
aGTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAGGGCGCGATATGAACGTGACGGTAAAACCGGCGGCGCATCCTGTGGGGACGACGCTGGAGGTGCTGGATCTGTTCt > 2:5653520/1‑149 (MQ=255)
gTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAGGGCGCGATATGAACGTGACGGTAAAACCGGCGGCGCATCCTGTGGGGACGACGCTGGAGGTGCTGGATCTGTTCTa > 4:1249301/1‑149 (MQ=255)
gTTCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAGGGCGCGATATGAACGTGACGGTAAAACCGGCGGCGCATCCTGTGGGGACGACGCTGGAGGTGCTGGATCTGTTCTa > 3:3435131/1‑149 (MQ=255)
ttCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAGGGCGCGATATGAACGTGACGGTAAAACCGGCGGCGCATCCTGTGGGGACGACGCTGGAg > 1:6901364/1‑131 (MQ=255)
ttCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAGGGCGCGATATGAACGTGACGGTAAAACCGGCGGCGCATCCTGTGGGGACGACGCTGGAGGTGCTGGATCTGTTCTac > 4:3859205/1‑149 (MQ=255)
ttCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAGGGCGCGATATGAACGTGACGGTAAAACCGGCGGCGCATCCTGTGGGGACGACGCTGGAGGTGCTGGATCTGTTCTac > 4:395766/1‑149 (MQ=255)
ttCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAGGGCGCGATATGAACGTGACGGTAAAACCGGCGGCGCATCCTGTGGGGACGACGCTGGAGGTGCTGGATCTGTTCTac > 2:2855301/1‑149 (MQ=255)
ttCGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAGGGCGCGATATGAACGTGACGGTAAAACCGGCGGCGCATCCTGTGGGGACGACGCTGGAGGTGCTGGATCTGTTCTac > 4:6627438/1‑149 (MQ=255)
cGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCt > 2:40951/1‑61 (MQ=255)
cGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGc < 2:2459862/65‑1 (MQ=255)
cGG‑TTTCCCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGc > 1:2459862/1‑65 (MQ=255)
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TCGTGATAACGGCTGCGGTATCAAAAAAGATGAGCTGGCGCTGGCGCTGGCTCGTCATGCCACCAGTAAAATCGCCTCTCTGGACGATCTCGAAGCCATTATCAGCCTGGGCTTTCGCGGTGAGGCGCTGGCGAGTATCAGTTCGG‑TTT‑CCCGCCTGACGCTCACTTCACGCACCGCAGAACAGCAGGAAGCCTGGCAGGCCTATGCCGAAGGGCGCGATATGAACGTGACGGTAAAACCGGCGGCGCATCCTGTGGGGACGACGCTGGAGGTGCTGGATCTGTTCTACAAC > NC_000913/4397579‑4397870
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
