Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F105 I0 R1
|
221 |
270.9 |
10031942 |
97.9% |
9821271 |
140.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
285,887 |
C→A |
5.2% |
L165M (CTG→ATG) |
yagG → |
CP4‑6 prophage; putative sugar transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 285,887 | 0 | C | A | 5.2%
| 876.6
/ 26.1
| 250 | L165M (CTG→ATG) | yagG | CP4‑6 prophage; putative sugar transporter |
| Reads supporting (aligned to +/- strand): ref base C (109/128); new base A (6/7); total (115/135) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.93e-01 |
Only 100 of 252 total aligned reads displayed.
CTCCTGACCCTGGTCTACACCTTCGTTAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAGCGGCGTGGTGCTGCTCTACGTCTGCTTCTTCACGACCAAAGAGCGCTACACCTTTGAGGTGCAGCCGGGCTC > NC_000913/285740‑286035
|
ctcCTGACCCTGGTCTACACCTTCGTTAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCt < 1:1809739/149‑1 (MQ=255)
ctcCTGACCCTGGTCTACACCTTCGTTAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCt < 1:1776057/149‑1 (MQ=255)
gACCCTGGTCTACACCTTCGTTAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGc < 2:1640736/149‑1 (MQ=255)
aCCCTGGTCTACACCTTCGTTAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCt > 3:172269/1‑149 (MQ=255)
aCCCTGGTCTACACCTTCGTTAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCAGCGCGATGCCGCt < 3:612772/149‑1 (MQ=255)
ccTGGTCTAGACCTTCGTTAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTgg > 1:2166428/1‑149 (MQ=255)
ccTGGTCTACACCTTCGTTAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGGCCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCAGCGCGATGCCGCTga < 4:1912642/149‑2 (MQ=255)
ccTGGTCTACACCTTCGTTAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTgg < 4:463553/149‑1 (MQ=255)
ccTGGTCTACACCTTCGTTAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTgg > 4:2024491/1‑149 (MQ=255)
tGGTCTACACCTTCGTTAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTg > 3:1811468/1‑149 (MQ=255)
tGGTCTACACCTTCGTTAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTg < 3:838052/149‑1 (MQ=255)
tGGTCTACACCTTCGTTAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTg < 3:2437546/149‑1 (MQ=255)
tGGTCTACACCTTCGTTAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTg > 1:1357836/1‑149 (MQ=255)
tCTACACCTTCGTTAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCTCACCAGCGGCAGCGCGATGCCGCTgatagc < 2:346334/149‑6 (MQ=255)
tCTACACCTTCGTTAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGc < 4:2310955/149‑1 (MQ=255)
tCTACACCTTCGTTAACGTGCCGTACTGCGCCATGCCGGGCGACATCACCGCCGACCCGAAAGAGCGTCACGGCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGGGAGc < 3:258685/149‑1 (MQ=255)
cTACACCTTCGTTAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGca > 4:1688215/1‑149 (MQ=255)
cTACACCTTCGTTAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGca < 4:907376/149‑1 (MQ=255)
ccTTCGTTAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCatcatc > 3:950153/1‑149 (MQ=255)
ccTTCGTTAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGATGAGCatcatc < 1:1871346/149‑1 (MQ=255)
cTTCGTTAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCg > 2:2368374/1‑149 (MQ=255)
cTTCGTTAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCg > 3:1695925/1‑149 (MQ=255)
cTTCGTTAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCg > 1:1968947/1‑149 (MQ=255)
ttCGTTAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCgg > 3:366751/1‑149 (MQ=255)
ttCGTTAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCgg > 1:1345246/1‑149 (MQ=255)
gTTAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCaa > 2:229806/1‑149 (MQ=255)
ttAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCaaa < 1:2368374/149‑1 (MQ=255)
ttAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCaaa > 3:817624/1‑149 (MQ=255)
tAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAg < 1:495956/149‑1 (MQ=255)
gTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGa < 2:1345246/149‑1 (MQ=255)
tGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGAc < 3:1688215/149‑1 (MQ=255)
ccGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGa < 4:957894/149‑1 (MQ=255)
gTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGc < 4:1575114/149‑1 (MQ=255)
ccgcCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCCGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGGGGGATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGtc < 4:2142523/148‑2 (MQ=255)
cgcCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCGTCGGCAAAGGGGACGAGCACGTgg < 1:2145222/149‑1 (MQ=255)
cgcCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTgg < 4:1387010/149‑1 (MQ=255)
cgcCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTgg < 4:183538/149‑1 (MQ=255)
cgcCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTgg < 1:1065662/149‑1 (MQ=255)
cgcCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTgg < 1:1470422/149‑1 (MQ=255)
ccATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGa < 2:2475760/117‑1 (MQ=255)
ccATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGa > 1:2475760/1‑117 (MQ=255)
ccATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAg < 1:1046340/140‑1 (MQ=255)
ccATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGc < 3:1981211/149‑1 (MQ=255)
cATGCCGGGCGTCATCACCGCCGACCCGAACGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCCGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCt > 1:1162699/1‑149 (MQ=255)
gggCGTCATCACCGTCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCg > 4:2240237/1‑149 (MQ=255)
gCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGgc < 2:1401979/149‑1 (MQ=255)
atcaCCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCTCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCAt > 2:1900155/1‑149 (MQ=255)
atcaCCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCAt > 1:1507180/1‑149 (MQ=255)
caCCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCAtgt > 1:834812/1‑149 (MQ=255)
caCCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCAtgt < 4:366751/149‑1 (MQ=255)
aCCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCAtgtg > 3:1031069/1‑149 (MQ=255)
aCCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCCCCAtgtg < 2:1507180/149‑1 (MQ=255)
ccgccgACCCGAAAGAGCGTCACGCTCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATgtgc > 2:827846/1‑149 (MQ=255)
ccgccgACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATgtgc < 2:1918660/149‑1 (MQ=255)
cgccgACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTg < 3:2183775/94‑1 (MQ=255)
aCCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTg < 3:678552/149‑1 (MQ=255)
ccGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCATGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGTGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTggg > 2:371085/1‑149 (MQ=255)
cGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTgggg > 4:1764379/1‑149 (MQ=255)
gAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGc > 3:1341925/1‑149 (MQ=255)
agagCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGa < 1:1906776/105‑1 (MQ=255)
agagCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGa < 2:1556961/149‑1 (MQ=255)
agagCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGa > 4:808106/1‑149 (MQ=255)
tCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAgcggcg > 4:2479385/1‑149 (MQ=255)
tCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAgcggcg < 3:2479385/149‑1 (MQ=255)
aCGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAGCGGCgtg < 2:523483/149‑1 (MQ=255)
gCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAGCGGCgtggt < 3:1472620/149‑1 (MQ=255)
ccTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAGCGGCGTGGtgc < 2:1778529/149‑1 (MQ=255)
ccTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGATCGCT‑ATCAACGGCATCGCGCTGCCGCTGGTGAGCATCATCCGCAAAGGAGACGAGCAGGTGGGCTACTACGGCGCCATGTGCGTGCTGGGGCTGAGCGGCGTGGtgc < 3:2086548/149‑1 (MQ=255)
tcAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAGCGGCGTGGtgctgc < 1:1134903/148‑1 (MQ=255)
gCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAGCGGCGTGGtgctgc > 3:648314/1‑149 (MQ=255)
aGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAGCGGCGTGGTGCTGctc < 4:1263068/149‑1 (MQ=255)
tGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAGCGGCGTGGTGCTGCTCTACGt > 4:1474113/1‑149 (MQ=255)
tGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAGCGGCGTGGTGCTGCTCTACGt > 4:218281/1‑149 (MQ=255)
gcgcTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATgtgcgtgc < 2:1089989/116‑1 (MQ=255)
gcTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAGCGGCGTGGTGCTGCTCTACGTCTGc < 1:2047124/149‑1 (MQ=255)
gcTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAGCGGCGTGGTGCTGCTCTACGTCTGc > 3:1766144/1‑149 (MQ=255)
ttcCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAgg < 2:2116219/71‑1 (MQ=255)
ttcCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAGCGGCGTGGTGCTGCTCTACGTCTGcttctt < 3:1889167/149‑1 (MQ=255)
cTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGt > 2:942765/1‑80 (MQ=255)
cTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGt < 1:942765/80‑1 (MQ=255)
gcggcggcgGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTgg > 1:1409005/1‑106 (MQ=255)
gcggcggcgGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTgg < 2:1409005/106‑1 (MQ=255)
gcggcggcgGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAGCGGCGTGGTGCTGCTCTACGTCTGCTTCTTCACGAc < 4:515553/149‑1 (MQ=255)
ggcggcggGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGt > 1:533468/1‑45 (MQ=255)
ggcggcggGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGt < 2:533468/45‑1 (MQ=255)
cggcggGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAGCGGCGTGGTGCTGCTCTACGTCTGCTTCTTCACGACCaaa < 3:2240237/149‑1 (MQ=255)
ggcggGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGt > 2:461136/1‑42 (MQ=255)
ctcgctcgCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAGCGGCGTGGTGCTGCTCTACGTCTGCTTCTTCACGACCAAAGAGCGCt > 4:931644/1‑149 (MQ=255)
cgctcgct‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAGCGGCGTGGTGCTGCTCTACGTCTGCTTCTTCAc < 3:1111383/133‑1 (MQ=255)
cgctcgct‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAGCGGCGTGGTGCTGCTCTACGTCTGCTTCTTCAc > 4:1111383/1‑133 (MQ=255)
ctcgct‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAGCGGCGTGGTGCTGCTCTACGTCTGCTTCTTCACGACCAAAGAGCGCTacac > 4:1317941/1‑149 (MQ=255)
tcgct‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAGCGGCGTGGTGCTGCTCTACGTCTGCTTCTTCACGACCAAAGAGCGCTACAcc > 1:72637/1‑149 (MQ=255)
t‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACg < 3:450800/50‑1 (MQ=255)
t‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACg > 4:450800/1‑50 (MQ=255)
t‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAGCGGCGTGGTGCTGCTCTACGTCTGCTTCTTCACGACCAAAGAGCGCTACACCTTTg > 1:1666838/1‑149 (MQ=255)
tCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAGCGGCGTGGTGCTGCTCTACGTCTGCTTCTTCATGACCAAAGAGCGCTACACCTTTGAg < 4:1010966/149‑1 (MQ=255)
ccAGCGGCAGCGCGATGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAGCGGCGTGGTGCTGCTCTACGTCTGCTTCTTCACGACCAAAGAGCGCTACACCTTTGAg > 3:1208281/2‑149 (MQ=255)
gCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAGCGGCGTGGTGCTGCTCTACGTCTGCTTCTTCACGACCAAAGAGCGCTACACCTTTGAg < 3:787142/146‑1 (MQ=255)
gCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAGCGGCGTGGTGCTGCTCTACGTCTGCTTCTTCACGACCAAAGAGCGCTACACCTTTGAg > 4:787142/1‑146 (MQ=255)
gCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAGCGGCGTGGTGCTGCTCTACGTCTGCTTCTTCACGACCAAAGAGCGCTACACCTTTGAGGTg > 4:655513/1‑149 (MQ=255)
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CTCCTGACCCTGGTCTACACCTTCGTTAACGTGCCGTACTGCGCCATGCCGGGCGTCATCACCGCCGACCCGAAAGAGCGTCACGCCCTGCAGTCCTGGCGCTTCTTCCTGGCGGCGGCGGGCTCGCTCGCT‑ATCAGCGGCATCGCGCTGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAGCGGCGTGGTGCTGCTCTACGTCTGCTTCTTCACGACCAAAGAGCGCTACACCTTTGAGGTGCAGCCGGGCTC > NC_000913/285740‑286035
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
