Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F187 I0 R2
|
632 |
116.8 |
4275814 |
98.0% |
4190297 |
140.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
1,613,461 |
C→T |
12.5% |
G415S (GGT→AGT) |
sad ← |
succinate semialdehyde dehydrogenase, NAD(P)+‑dependent |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,613,461 | 0 | C | T | 12.5%
| 264.2
/ 25.5
| 96 | G415S (GGT→AGT) | sad | succinate semialdehyde dehydrogenase, NAD(P)+‑dependent |
| Reads supporting (aligned to +/- strand): ref base C (44/40); new base T (6/6); total (50/46) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.56e-01 |
GTCAGATCCGGTCTTTCCACACCGTCTGGATATTACAGAATTCGTGTAAGCCGAAATGGGAAAGCTCACGACCAAAGCCACTCTTTTTCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACGGGGCCAAACATT > NC_000913/1613314‑1613609
|
ttCAGATCCGGTCTGTCCACACCGTCTGGATATTACAGAATTCGTGTAAGCCGAAATGGGAAAGCTCACGACCAAAGCCACTCTTTTTCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATAGATAAACACCCCACCg > 2:114985/2‑149 (MQ=255)
gATCCGGTCTTTCCACACCGTCTGGATATTACAGAATTCGTGTAAGCCGAAATGGGAAAGCTCACGACCAAAGCCACTCTTTTTCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCAtt < 1:948148/149‑1 (MQ=255)
tCCGGTCTTTCCACACCGTCTGGATATTACAGAATTCGTGTAAGCCGAAATGGGAAAGCTCACGACCAAAGCCACTCTTTTTCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTc > 3:633811/1‑148 (MQ=255)
tCCGGTCTTTCCACACCGTCTGGATATTACAGAATTCGTGTAAGCCGAAATGGGAAAGCTCACGACCAAAGCCACTCTTTTTCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTc > 3:277235/1‑148 (MQ=255)
ccGGTCTTTCCACACCGTCTGGATATTACAGAATTCGTGTAAGCCGAAATGGGAAAGCTCACGACCAAAGCCACTCTTTTTCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCa < 2:595998/149‑1 (MQ=255)
cGGTCTTTCCACACCGTCTGGATATTACAGAATTCGTGTAAGCCGAAATGGGAAAGCTCACGACCAAAGCCACTCTTTTTCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACTGCATTCCAg > 2:1059022/1‑149 (MQ=255)
cGGTCTTTCCACACCGTCTGGATATTACAGAATTCGTGTAAGCCGAAATGGGAAAGCTCACGACCAAAGCCACTCTTTTTCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAg > 1:752690/1‑149 (MQ=255)
ggTCTTTCCACACCGTCTGGATATTACAGAATTCGTGTAAGCCGAAATGGGAAAGCTCACGACCAAAGCCACTCTTTTTCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAg < 4:310568/148‑1 (MQ=255)
gTCTTTCCACACCGTCTGGATATTACAGAATTCGTGTAAGCCGAAATGGGAAAGCTCACGACCAAAGCCACTCTTTTTCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAGTAACCATTGATAAACACCCCACTGCATTCCAGAc < 2:1044536/149‑1 (MQ=255)
acacCGTCTGGATATTACAGAATTCGTGTAAGCCGAAATGGGAAAGCTCACGACCAAAGCCACTCTTTTTCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTgccgcc > 1:192453/1‑149 (MQ=255)
cTGGATATTACAGAATTCGTGTAAGCCGAAATGGGAAAGCTCACGACCAAAGCCACTCTTTTTCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACTGCATTCCAGACGTGCCGCCAtctgtc < 2:730577/149‑1 (MQ=255)
cTGGATATTACAGAATTCGTGTAAGCCGAAATGGGAAAGCTCACGACCAAAGCCACTCTTTTTCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCAtctgt < 4:1005537/148‑1 (MQ=255)
gATATTACAGAATTCGTGTAAGCCGAAATGGGAAAGCTCACGACCAAAGCCACTCTTTTTCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACTGCATTCCAGACGTGCCGCCAtctgtctg > 4:831634/1‑148 (MQ=255)
atatTACAGAATTCGTGTAAGCCGAAATGGGAAAGCTCACGACCAAAGCCACTCTTTTTCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACTGCATTCCAGACGTGCCGCCATCTGTCTGGc > 2:730153/1‑149 (MQ=255)
atTACAGAATTCGTGTAAGCCGAAATGGGAAAGCTCACGACCAAAGCCACTCTTTTTCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCt < 2:1014014/149‑1 (MQ=255)
agtACAGAATTCGTGTAAGCCGAAATGGGAAAGCTCACGACCAAAGCCACTCTTTTTCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGccc > 3:934043/3‑148 (MQ=255)
aGAATTCGTGTAAGCCGAAATGGGAAAGCTCACGACCAAAGCCACTCTTTTTCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGtt > 1:681356/1‑149 (MQ=255)
aaTTCGTGTAAGCCGAAATGGGAAAGCTCACGACCAAAGCCACTCTTTTTCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTc < 2:681356/149‑1 (MQ=255)
ttCGTGTAAGCCGAAATGGGAAAGCTCACGACCAAAGCCACTCTTTTTCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCg > 4:219261/1‑148 (MQ=255)
tCGTGTAAGCCGAAATGGGAAAGCTCACGACCAAAGCCACTCTTTTTCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGt > 4:929356/1‑148 (MQ=255)
gtAAGCCGAAATGGGAAAGCTCACGACCAAAGCCACTCTTTTTCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTg < 1:330872/149‑1 (MQ=255)
aGCCGAAGTGGGAAAGCTCACGACCAAAGCCACTCTTTTTCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGt > 3:467700/1‑148 (MQ=255)
cGAAATGGGAAAGCTCACGACCAAAGCCACTCTTTTTCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTaaa > 4:887428/1‑148 (MQ=255)
aaaTGGGAAAGCTCACGACCAAAGCCACTCTTTTTCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACTGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTaaaaa > 3:678365/1‑148 (MQ=255)
tGGGAAAGCTCACGACCAAAGCCACTCTTTTTCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATgg < 4:934043/148‑1 (MQ=255)
gAAAGCTCACGACCAAAGCCACTCTTTTTCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGc < 2:496312/149‑1 (MQ=255)
aGCTCACGACCAAAGCCACTCTTTTTCAAGCCACCAAAGGCCACTCGCGCGTCGGTGGCACAATAACAATTGATAAACACCCCATCGCTTTCCAGACGTGCCGCAATCTGTCTGGCCTATGAATCGTCAGTGGTAAAAATGGTCGCTg > 4:656973/1‑148 (MQ=255)
gCTCACGACCAAAGCCACTCTTTTTCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTgg > 2:954278/1‑114 (MQ=255)
gCTCACGACCAAAGCCACTCTTTTTCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTgg < 1:954278/114‑1 (MQ=255)
tCACGCCCACAGCCACTCTTTTTCCCGCCACCCAAGCCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGCGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAACTGGTCGCTGaaa < 3:419901/148‑1 (MQ=255)
tCACGACCAAAGCCACTCTTTTTCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAg > 2:636504/1‑149 (MQ=255)
cGACCAAAGCCACTCTTTTTCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGc < 4:749026/148‑1 (MQ=255)
cGACCAAAGCCACTCTTTTTCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGc > 3:706665/1‑148 (MQ=255)
gACCAAAGCCACTCTTTTTCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACTGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGcc < 3:831634/148‑1 (MQ=255)
aCCAAAGCCACTCTTTTTCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCg < 4:372216/148‑1 (MQ=255)
ccAAAGCCACTCTTTTTCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGaa > 1:96392/1‑149 (MQ=255)
ccAAAGCCACTCTTTTTCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGaa < 1:707866/149‑1 (MQ=255)
gCCACTCTTTTTCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCAc < 2:417681/149‑1 (MQ=255)
ccACTCTTTTTCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACt < 1:1071514/149‑1 (MQ=255)
ccACTCTTTTTCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACt > 1:731386/1‑149 (MQ=255)
aCTCTTTTTCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTa < 4:460338/148‑1 (MQ=255)
ctctTTTTCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTc < 4:225127/143‑1 (MQ=255)
ctctTTTTCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTc > 3:225127/1‑143 (MQ=255)
ctctTTTTCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTAt > 4:357459/1‑148 (MQ=255)
ctctTTTTCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTAt > 4:964830/1‑148 (MQ=255)
ctctTTTTCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTAt > 3:908729/1‑148 (MQ=255)
tctTTTTCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATc < 3:401968/148‑1 (MQ=255)
tttttCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACGATTGATAAACACCCCACTGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCAtt > 2:140619/1‑149 (MQ=255)
ttgttCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTGAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTTTCAtt > 2:386771/4‑149 (MQ=255)
ttttCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACTGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTa < 1:730153/149‑1 (MQ=255)
ttttCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCa > 3:553145/1‑146 (MQ=255)
ttttCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCAtt > 3:129688/1‑148 (MQ=255)
ttttCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTa < 2:752690/149‑1 (MQ=255)
ttttCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACGCCCTATCa < 4:553145/146‑1 (MQ=255)
tattCACGCCACCAAAGGCCACTCGCGCGTCGCTAGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCAtt < 3:634509/146‑1 (MQ=255)
tttCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATAGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGT‑AAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGc < 1:114985/149‑1 (MQ=255)
ttCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGc < 2:365682/149‑1 (MQ=255)
ccaccaAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGtt > 3:731290/1‑148 (MQ=255)
accaAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTcc < 3:357459/148‑1 (MQ=255)
aGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTcc > 2:270820/1‑143 (MQ=255)
aGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTcc < 1:270820/143‑1 (MQ=255)
aGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCa < 2:998439/149‑1 (MQ=255)
aCTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGtt < 4:706665/148‑1 (MQ=255)
aCTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGtt < 4:949697/148‑1 (MQ=255)
tCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTg > 1:435712/1‑149 (MQ=255)
gcgcgTCGCTGGCACAATAACCATTGATAAACACCCCACTGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGc < 4:678365/148‑1 (MQ=255)
tCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCttt < 1:558791/149‑1 (MQ=255)
cGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTc < 2:96392/149‑1 (MQ=255)
cTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCg < 4:467700/148‑1 (MQ=255)
ggCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCaa > 2:850423/1‑149 (MQ=255)
ggCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCa > 4:747140/1‑148 (MQ=255)
gCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCaa < 3:373931/148‑1 (MQ=255)
cacaATAACCATTGATAAACACCCCACTGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATg < 1:1059022/149‑1 (MQ=255)
cacaATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAAt > 3:26346/1‑148 (MQ=255)
caATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCg < 4:1050377/85‑1 (MQ=255)
caATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCg > 3:1050377/1‑85 (MQ=255)
aaTAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGt > 4:285360/1‑148 (MQ=255)
ccATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGAATCTTTCGCAATGGTGATTg > 4:607625/1‑148 (MQ=255)
aTTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGcc > 3:1038854/1‑148 (MQ=255)
aTTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGcc > 4:624054/1‑148 (MQ=255)
ttGATAAACACCCCACTGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCg > 3:776664/1‑148 (MQ=255)
ttGATAAACACCCCACCGGATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCg > 3:646204/1‑148 (MQ=255)
ttGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAgg > 4:288749/1‑84 (MQ=255)
ttGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAgg < 3:288749/84‑1 (MQ=255)
ttGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCg > 3:203720/1‑148 (MQ=255)
ttGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGc > 2:197051/1‑149 (MQ=255)
aTAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCa < 1:1001751/109‑1 (MQ=255)
aTAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCa > 2:1001751/1‑109 (MQ=255)
aaaCACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCaa > 3:13327/1‑146 (MQ=255)
aaaCACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCaa < 4:13327/146‑1 (MQ=255)
acCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACGGGGcc < 2:435712/149‑1 (MQ=255)
acCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACGGGGcc > 2:210174/1‑149 (MQ=255)
cACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCa > 3:143833/1‑80 (MQ=255)
cACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCa < 4:143833/80‑1 (MQ=255)
aCCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTc < 3:439283/78‑1 (MQ=255)
aCCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTc > 4:439283/1‑78 (MQ=255)
ccGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACGGGGCCAAACa < 4:129688/148‑1 (MQ=255)
cGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGATCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACGGGGCCAAACAtt > 1:78045/1‑149 (MQ=255)
cGCATTCCAGACGTGCCGCCATCTGTCTGGCCTCTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACGGGGCCAAACAt > 3:474965/1‑148 (MQ=255)
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GTCAGATCCGGTCTTTCCACACCGTCTGGATATTACAGAATTCGTGTAAGCCGAAATGGGAAAGCTCACGACCAAAGCCACTCTTTTTCACGCCACCAAAGGCCACTCGCGCGTCGCTGGCACAATAACCATTGATAAACACCCCACCGCATTCCAGACGTGCCGCCATCTGTCTGGCCTGTGTTTCGTCAGTGGTAAAAATGGTCGCTGAAAGGCCGAACTCACTATCATTAGCCAGTTCCAGTGCATGTTCTGCATCTTTCGCAATGGTGATTGCCGCAACGGGGCCAAACATT > NC_000913/1613314‑1613609
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
