Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A35 F9 I0 R1
|
1164 |
192.0 |
7567036 |
97.0% |
7340024 |
130.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,704,138 |
A→T |
5.4% |
F208L (TTT→TTA) |
dppC ← |
dipeptide/heme ABC transporter permease |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,704,138 | 0 | A | T | 5.4%
| 681.5
/ 20.0
| 185 | F208L (TTT→TTA) | dppC | dipeptide/heme ABC transporter permease |
| Reads supporting (aligned to +/- strand): ref base A (92/83); new base T (5/5); total (97/88) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.78e-01 |
Only 100 of 203 total aligned reads displayed.
CGGAGAGCATGGTGCCCCACTCAGGCGTTGGCGGCTGTGCCCCCATGCCGAGGAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCGGCAAGGCAACGAAGGTCAGTGCCAGCGCGGCGTTACCAATCGACG > NC_000913/3703993‑3704286
|
cGGAGAGCATGGTGCCCCACTCAGGCGTTGGCGGCTGTGCCCCCATGCCGAGGAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAAc < 4:1307800/149‑1 (MQ=255)
gagCATGGTGCCCCACTCAGGCGTTGGCGGCTGTGCCCCCATGCCGAGGAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCt > 2:49165/1‑149 (MQ=255)
gCATGGTGCCCCACTCAGGCGTTGGCGGCTGTGCCCCCATGCCGAGGAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGa < 3:593475/149‑1 (MQ=255)
cATGGTGCCCCACTCAGGCGTTGGCGGCTGTGCCCCCATGCCGAGGAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGa < 4:711607/148‑1 (MQ=255)
tGCCCCACTCAGGCGTTGGCGGCTGTGCCCCCATGCCGAGGAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATc < 1:875646/149‑1 (MQ=255)
cccACTCAGGCGTTGGCGGCTGTGCCCCCATGCCGAGGAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACAt > 3:849386/1‑136 (MQ=255)
ccACTCAGGCGTTGGCGGCTGTGCCCCCATGCCGAGGAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGccc > 4:845863/1‑149 (MQ=255)
aCTCAGGCGTTGGCGGCTGTGCCCCCATGCCGAGGAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCg < 1:590179/149‑1 (MQ=255)
aCTCAGGCGTTGGCGGCTGTGCCCCCATGCCGAGGAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCg < 1:1347711/149‑1 (MQ=255)
tCAGGCGTTGGCGGCTGTGCCCCCATGCCGAGGAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACa > 2:353866/1‑130 (MQ=255)
tCAGGCGTTGGCGGCTGTGCCCCCATGCCGAGGAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGc > 4:176694/1‑149 (MQ=255)
ggCGTTGGCGGCTGTGCCCCCATGCCGAGGAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACAt > 3:687951/1‑128 (MQ=255)
gCGTTGGCGGCTGTGCCCCCATGCCGAGGAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCAccc < 4:902756/149‑1 (MQ=255)
gTTGGCGGCTGTGCCCCCATGCCGAGGAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGc < 3:1510451/149‑1 (MQ=255)
tGGCGGCTGTGCCCCCATGCCGAGGAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCa < 4:265603/149‑1 (MQ=255)
gtgCCCCCATGCCGAGGAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGAc > 3:918831/1‑149 (MQ=255)
ccccATGCCGAGGAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCa > 1:1711453/1‑137 (MQ=255)
ccccATGCCGAGGAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCa < 2:1711453/137‑1 (MQ=255)
ccccATGCCGAGGAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCgg > 2:1462982/1‑149 (MQ=255)
cccATGCCGAGGAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCAt < 3:1088858/119‑1 (MQ=255)
cccATGCCGAGGAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGt > 3:739803/1‑149 (MQ=255)
gAGGAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAAt < 3:1204499/149‑1 (MQ=255)
gAGGAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAAt > 2:5533/1‑149 (MQ=255)
gAGGAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAAt > 2:1811755/1‑149 (MQ=255)
aGGAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATc > 2:455917/1‑149 (MQ=255)
ggAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCgaga < 1:1681816/133‑1 (MQ=255)
ggAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCgaga > 2:1681816/1‑133 (MQ=255)
ggAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCga > 1:1080554/1‑131 (MQ=255)
gAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGAc > 4:525342/1‑141 (MQ=255)
gAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATcgc > 2:1270746/1‑149 (MQ=255)
aaaCCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATcgcg < 1:1270746/149‑1 (MQ=255)
aaCCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATcgcgc > 2:257233/1‑148 (MQ=255)
aaCCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCgg > 4:1668380/1‑149 (MQ=255)
ccAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTTATTAAc < 1:833258/93‑1 (MQ=255)
cAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGAc < 4:1506746/136‑1 (MQ=255)
cAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGt > 2:1406620/1‑138 (MQ=255)
agagCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCg > 1:477405/1‑103 (MQ=255)
gagCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACt < 4:592795/149‑1 (MQ=255)
gcCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTTATTAACATCttc < 4:1095165/90‑3 (MQ=255)
ccATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTTATTAACATCtt < 1:405449/88‑2 (MQ=255)
cATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGa < 2:611734/125‑1 (MQ=255)
atatCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCgg > 4:674381/1‑135 (MQ=255)
atatCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAg > 3:1263097/1‑149 (MQ=255)
tCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCa < 2:631519/148‑1 (MQ=255)
ggCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGgcgc > 3:1722690/1‑149 (MQ=255)
gagaAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCgg < 4:409205/144‑1 (MQ=255)
gaAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTcc > 3:1420009/1‑124 (MQ=255)
gaAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAgc > 3:400274/1‑149 (MQ=255)
aaCCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATaaa > 1:852601/1‑58 (MQ=255)
aCCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGcaca > 4:1221795/1‑149 (MQ=255)
aCCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGca < 1:1811755/149‑1 (MQ=255)
gACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTg > 1:1523217/1‑149 (MQ=255)
aCGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGc < 1:1440177/149‑1 (MQ=255)
ccTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCggc < 3:1142090/149‑1 (MQ=255)
tGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGAc > 2:856864/1‑89 (MQ=255)
tGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCggg < 1:511870/127‑1 (MQ=255)
tGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCggcaa > 1:1212271/1‑149 (MQ=255)
tGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCggcaa > 1:677517/1‑149 (MQ=255)
tGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCggcaa > 3:529046/1‑149 (MQ=255)
aaCAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCggcaagg < 3:577095/149‑1 (MQ=255)
aaTCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAg < 4:355045/136‑1 (MQ=255)
aaTCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAg > 3:355045/1‑136 (MQ=255)
tCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCGGCAAGGCAACg > 3:299133/1‑149 (MQ=255)
gcggcgCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATcgcg > 2:1066008/1‑88 (MQ=255)
gcggcgCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCggcaag < 2:841143/140‑1 (MQ=255)
gcggcgCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCGGCAAGGCAACGAAg < 2:694711/149‑1 (MQ=255)
cgcAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGc > 2:1037015/1‑100 (MQ=255)
cgcAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGc < 1:1037015/100‑1 (MQ=255)
aaGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCGGCAAGGCAACGAAg > 4:534226/1‑142 (MQ=255)
ggCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTccac > 2:673521/1‑91 (MQ=255)
cAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCGGCAAGGCAACGAAGGTCAGTGCCAg > 4:221799/1‑149 (MQ=255)
cAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCGGCAAGGCAACGAAGGTCAGTGCCAg < 3:885950/149‑1 (MQ=255)
gTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCGGCAAGGCAACGAAg < 2:1602981/136‑1 (MQ=255)
gTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCGGCAAGGCAACGAAg > 1:1602981/1‑136 (MQ=255)
ttCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCGGCAAGGCAACGAAGGTCAGTGCCAgcgc < 2:1212271/149‑1 (MQ=255)
gggAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCGGCAAGGCAACGAAGGTCAGTGCCAGCgcggc > 1:1051587/1‑149 (MQ=255)
gtcaGATGTTTATTAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCGGCAAGGCAACGaa < 3:621794/127‑1 (MQ=255)
gtcaGATGTTTATTAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCGGCAAGGCAACGaa > 4:621794/4‑130 (MQ=255)
gAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCGGCAAGGCAACGaa < 4:1043009/129‑1 (MQ=255)
gAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCGGCAAGGCAACGAAGGTCAGTGCCAGCGCGGCGt > 3:970769/1‑149 (MQ=255)
aaGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCGGCAAGGCAACGAAGGTCAGTGCCAGCGCGGCGtt < 1:613680/149‑1 (MQ=255)
gATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCGGCAAGGCAACGAAGGTCAGTGCCAGCGCGGCGTTAc < 2:1523217/149‑1 (MQ=255)
gATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCGGCAAGGCAACGAAGGTCAGTGCCAGCGCGGCGTTAc < 3:1013023/149‑1 (MQ=255)
gATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCGGCAAGGCAACGAAGGTCAGTGCCAGCGCGGCGTTAc > 3:500940/1‑149 (MQ=255)
gTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGTGGCAAGGCAACGAAGGTCAGTTCCAGCGCGGCGTTACCaa < 1:547314/149‑1 (MQ=255)
ttAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCggcaag < 3:246354/114‑1 (MQ=255)
ttAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCggcaag < 2:522499/114‑1 (MQ=255)
ttAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCGGCAAGGCAACGAAGGTCAGTGCCAGCGCGGCGTTACCAAt < 4:855733/149‑1 (MQ=255)
ttAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCGGCAAGGCAACGAAGGTCAGTGCCAGCGCGGCGTTACCAAt < 3:1807047/149‑1 (MQ=255)
aataaACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCGGCAAGGCAACGAAGGTCAGTGCCAGCGCGGCGTTACCAATCg > 1:1475166/1‑149 (MQ=255)
ataaACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCggg < 2:1840488/88‑1 (MQ=255)
ataaACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCggg > 1:1840488/1‑88 (MQ=255)
ataaACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCGGCAAGGCAACGAAGGTCAGTGCCAGTGCGGCGTTAc > 4:1597036/1‑142 (MQ=255)
ataaACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCGGCAAGGCAACGAAGGTCAGTGCCAGCGCGGCGTTAc < 3:1597036/142‑1 (MQ=255)
taaACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCGGCAAGGCAACGAAGGTCAGt > 3:1870227/1‑125 (MQ=255)
taaACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCGGCAAGGCAACGAAGGTCAGt < 4:1870227/125‑1 (MQ=255)
aaaCATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCGGCAAGGCAACGaa < 1:649859/117‑1 (MQ=255)
aaaCATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCGGCAAGGCAACGAAGGTCAGTGCCAGCGCGGCGTTACCaa < 1:1748248/143‑1 (MQ=255)
aaaCATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCGGCAAGGCAACGAAGGTCAGTGCCAGCGCGGCGTTACCaa > 2:1748248/1‑143 (MQ=255)
aaaCATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCGGCAAGGCAACGAAGGTCAGTGCCAGCGCGGCGTTACCAATCGACg > 1:301692/1‑149 (MQ=255)
|
CGGAGAGCATGGTGCCCCACTCAGGCGTTGGCGGCTGTGCCCCCATGCCGAGGAAACCAAGAGCAGCCATATCGAGAATGGCGTTAGAGAAACCGAGCGACGCCTGAACAATCAGCGGCGCAAGGCAGTTCGGGAAGATGTTAATAAACATCTGACGCATCGCCCCGGCACCCGCCACGCGAGACGCGGTGACGTAATCGCGGTTAACTTCCACCAGCACGGCGGCGCGGGTTAAGCGCACATAGTGCGGCAAGGCAACGAAGGTCAGTGCCAGCGCGGCGTTACCAATCGACG > NC_000913/3703993‑3704286
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
