Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A30 F33 I1 R1
|
10 |
135.0 |
2795192 |
89.2% |
2493311 |
261.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
NC_000913 |
1,392,553 |
Δ3,491 bp |
IS5‑mediated |
[pgrR]–ynaI |
[pgrR], mppA, ynaI |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
NC_000913 |
1392553 |
1397081–1396040 |
3488–4529 |
180 [0] |
[58] 59 |
[pgrR]–[insH1] |
[pgrR],mppA,ynaI,[insH1] |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
= 1392552 | 0 (0.000) | 180 (1.300) |
97/520 |
0.1 |
100% |
coding (562/900 nt) |
pgrR |
murein peptide degradation regulator |
| ? | NC_000913 |
= 2290113 |
NA (NA) | noncoding (1/1195 nt) |
IS5 |
repeat region |
GATK/CNVnator alignment
N/A
