Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F109 I1 R1	31	90.0	1985866	95.2%	1890544	140.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	USA300TCH1516_ALE	1,416,458	A→T	I216N (ATT→AAT)	oppD_4 ←	Oligopeptide transport ATP‑binding protein OppD

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	USA300TCH1516_ALE	1,416,458	0	A	T	98.7%	237.0 / ‑5.6	78	I216N (ATT→AAT)	oppD_4	Oligopeptide transport ATP‑binding protein OppD
Reads supporting (aligned to +/- strand): ref base A (0/0); major base T (36/41); minor base G (0/1); total (36/42)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.45e-01

AATCATAGTAATCCCTCTTTAATTGTGTTCTATATTTAATTAGACGTTCAGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAAATGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTG‑ATAATAAATAATGTTTGACCATGTTCTAATACAATATGCTGTAATAAATCCATCACTTGATTACCGTTCAAAGCATCCAATGATGCAACTGGTTCG  >  USA300TCH1516_ALE/1416330‑1416595

aaTCATAGTAATCCCTCTTTAATTGTGTTCTATATTTAATTAGACGTTCAGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAat                                                                                                                                <  1:263744/141‑1 (MQ=255)

 aTCATAGTAATCCCTCTTTAATTGTGTTCTATATTTAATTAGACGTTCAGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAata                                                                                                                               >  1:183109/1‑141 (MQ=255)

     tAGTAATCCCTCTTTAATTGTGTTCTATATTTAATTAGACGTTCAGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACAGAATTGTACTGACAATATTTc                                                                                                                           >  2:992206/1‑141 (MQ=255)

         aaTCCCTCTTTAATTGTGTTCTATATTTAATTAGACGTTCAGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATa                                                                                                                       >  2:50943/1‑141 (MQ=255)

          aTCCCTCTTTAATTGTGTTCTATATTTAATTAGACGTTCAGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATAc                                                                                                                      >  1:320943/1‑141 (MQ=255)

              ctctTTACTTGTGTTCTATATTTAATTATACGTTCAGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGa                                                                                                                  <  2:772099/141‑1 (MQ=255)

              ctctTTAATTGTGTTCTATATTTAATTAGACGTTCAGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGa                                                                                                                  <  2:133398/141‑1 (MQ=255)

              ctctTTAATTGTGTTCTATATTTAATTAGACGTTCAGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGa                                                                                                                  <  1:571952/141‑1 (MQ=255)

                    aaTTGTGTTCTATATTTAATTAGACGTTCAGTATACGGATGAAAATGCTAATTCTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAg                                                                                                            >  2:951146/1‑141 (MQ=255)

                     aTTGTGTTTCATATTTAATTAGACGTTCAGTATACGGATGCAAATGCTCATACTTACCATGCTAAATGTTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGt                                                                                                           <  1:228778/141‑1 (MQ=255)

                     aTTGTGTTCTATATTTAATTAGACGTTCAGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGt                                                                                                           <  1:297554/141‑1 (MQ=255)

                     aTTGTGTTCTATATTTAATTAGACGTTCAGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGt                                                                                                           <  1:74332/141‑1 (MQ=255)

                      ttGTGTTCTATATTTAATTAGACGTTCAGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGtt                                                                                                          <  1:964605/141‑1 (MQ=255)

                                 atTTAATTAGACGTTCAGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTG‑ataa                                                                                              <  1:133415/141‑1 (MQ=255)

                                  tttAATTAGACGTTCAGTATACGGATGCAAATACTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTCAGTTAAGTGTG‑ataaa                                                                                             >  2:188201/1‑140 (MQ=255)

                                      aTTAGACGTTCAGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTG‑ATaataaat                                                                                         <  2:183109/141‑1 (MQ=255)

                                       ttAGACGTTCAGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGAATTGACCGTCTTTTACTAACTAATTGGACTGACAATATTTCAATACATGACTTAAGTTATGTGTG‑ATaataaata                                                                                        >  1:927400/1‑141 (MQ=255)

                                         aGACGTTCAGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTG‑ATAATAaataat                                                                                      >  1:785750/1‑141 (MQ=255)

                                          gACGTTGAATCTAGGGAGGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTG‑ATAATAAATAATg                                                                                     >  2:706386/1‑141 (MQ=255)

                                           aCGTTCAGTATACGGATGCAAATGCTCGTACTTGAAATGATTAATATTACCTCGTTCAATGATTTGATCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAGGTTATGTGTG‑ATAATGAATATTGt                                                                                    >  2:296243/1‑141 (MQ=255)

                                           aCGTTCAGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGTCCTTCGGTTAAAGTACAAGTGTACTGAAAATATTTCAATACATGACTTAAGTTATGTGTG‑ATAAGAAATAATGt                                                                                    <  2:406187/141‑1 (MQ=255)

                                           aCGTTCAGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTG‑GTAATAAATAATGt                                                                                    >  2:798418/1‑141 (MQ=255)

                                           aCGTTCAGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTG‑ATAATAAATAATGt                                                                                    <  1:645597/141‑1 (MQ=255)

                                           aCGTTCAGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATGACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTCTGTGTG‑ATAATAAATAATGt                                                                                    >  2:14290/1‑141 (MQ=255)

                                             gTTCAGTATACTGATGCAAATGCCCATACTTGAGATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTG‑ATAATAAATAATGttt                                                                                  <  2:773185/141‑1 (MQ=255)

                                             gTTCAGCATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTG‑ATAATAAATAATGttt                                                                                  <  2:773250/141‑1 (MQ=255)

                                                cAGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTG‑ATAATAAATAATGTTTGAc                                                                               >  2:598546/1‑141 (MQ=255)

                                                 aGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTG‑ATAATAAATAATGTTTGAcc                                                                              >  1:121045/1‑141 (MQ=255)

                                                  gTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTG‑ATAATAAATAATGTTTGACCa                                                                             <  1:805070/141‑1 (MQ=255)

                                                   aataCCGATGCAAATGCCTATACTTGCAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTG‑ATAATAAATAATGTTTGACCAt                                                                            <  1:861729/140‑1 (MQ=255)

                                                    ataCGTAGGCAAATGCTCATACGTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTG‑ATAATAAATAATGTTTGACCATg                                                                           <  2:272612/141‑1 (MQ=255)

                                                     taCGGGTGCAAATGATCATACTTGACCAAATTACTCTTTGCAGGATCCATGAATTGAAGTTCTTTTCGATCATAATACTTCAGAAAATATTTCAATACATGACGTAGGTTATGTGGG‑ATAATAAATAATGTTTGACCATGt                                                                          <  2:474779/141‑1 (MQ=255)

                                                     taCGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTG‑ATAATAAATAATGTTTGACCATGt                                                                          <  1:798337/141‑1 (MQ=255)

                                                     taCGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTG‑ATAATAAATAATGTTTGACCATGt                                                                          <  1:862553/141‑1 (MQ=255)

                                                     aaCGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTG‑ATAATAAATAATGTTTGACCATGt                                                                          <  1:798611/140‑1 (MQ=255)

                                                      aCGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTG‑ATAATAAATAATGTTTGACCATGtt                                                                         >  1:298133/1‑141 (MQ=255)

                                                           tGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTG‑ATAATAAATAATGTTTGACCATGTTCTAAt                                                                    >  2:896877/1‑141 (MQ=255)

                                                           tGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTG‑ATAATAAATAATGTTTGACCATGTTCTAAt                                                                    >  2:517666/1‑141 (MQ=255)

                                                           tGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGAATTAAGTTATGTGTG‑ATAATAAATAATGTTTTACCATGTTTTAAt                                                                    >  2:607620/1‑141 (MQ=255)

                                                           tGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATAATTTGGCCTTCTTTTAAAACATAATTGTACTGACAATATTTCTATACATGACTTAAGTTATGAGTG‑ATAATAAATAATGTTTTACCATGTTCTAAt                                                                    >  2:543236/1‑141 (MQ=255)

                                                            ccAAAAGCCCATACTTGAAATGATAAATAATACCACGTACAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAACCTTTCAATACATGACATAAGTTATATGTG‑ATAATAAATAATGTTTGACCATGTTCTAATa                                                                   <  2:551343/140‑1 (MQ=255)

                                                             cAAATGCTCATACTTGGAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCCATACATGCCGTAAGTTATGTGTG‑ATAATAAATAATGTTTGACCATGTTCTAATAc                                                                  <  2:795162/141‑1 (MQ=255)

                                                               aaTGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTG‑ATAATAAATAATGTTTGACCATGTTCTAATACaa                                                                >  1:438864/1‑141 (MQ=255)

                                                               aaTGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTG‑ATAATAAATAATGTTTGACCATGTTCTAATACaa                                                                >  2:341367/1‑141 (MQ=255)

                                                                aTGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTGAATATATCACTTATGTTATGTTTG‑ATAATTAATAATGTTTGACAATGTTCTAATACaag                                                               >  1:766520/1‑140 (MQ=255)

                                                                       tACTTTAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAATTTATGTGTG‑ATAATAAATAATGTTTGACCATGTTCTAATACAATATGCTGt                                                        <  2:510103/141‑1 (MQ=255)

                                                                       tACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTG‑ATAATAAATAATGTTTGGTCATGTTCTAATACAATATGgtgt                                                        >  2:30694/1‑141 (MQ=255)

                                                                       tACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTG‑ATAATAAATAATGTTTGACCATTTTCTAATACAATATGCTGt                                                        >  2:332965/1‑141 (MQ=255)

                                                                       tACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTG‑ATAATAAATAATGTTTGACCATGTTCTAATACAATATGCttt                                                        >  1:472494/1‑139 (MQ=255)

                                                                       tACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTG‑ATAATAAATAATGTTTGACCATGTTCTAATACAATATGCTGt                                                        >  1:810961/1‑141 (MQ=255)

                                                                               aTGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTG‑ATAATAAATAATGTTTGACCATGTTCTAATACAATATGCTGTAATAAATc                                                <  1:624572/141‑1 (MQ=255)

                                                                                tGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTG‑ATAATAAATAATGTTTGACCATGTTCTAATACAATATGCTGTAATAAATcc                                               >  1:193302/1‑141 (MQ=255)

                                                                                 gATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTG‑ATAATAAATAATGTTTGACCATGTTCTAATACAATATGCTGTAATAAATCCa                                              >  2:974935/1‑141 (MQ=255)

                                                                                  aTTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATAGTTCAATACATGACTTAAGTTATGTGTG‑ATAATAAATAATGTTTGACCATGTTCTAATATAATATAATGTAATAAATCCag                                             >  1:407062/1‑140 (MQ=255)

                                                                                   ttAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTG‑ATAATAAATAATGTTTGACCATGTTCTAATACAATATGCTGTAATAAATCCATc                                            >  1:756378/1‑141 (MQ=255)

                                                                                   ttAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTG‑ATAATAAATAATGTTTGACCATGTTCTAATACAATATGCTGTAATAAATCCATc                                            <  1:372444/141‑1 (MQ=255)

                                                                                   ttAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTG‑ATAATAAATAATGTTTGACCATGTTCTAATACAATATGCTGTAATAAATCCATc                                            >  2:705093/1‑141 (MQ=255)

                                                                                       tatTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCACTACATGACTTAAGTTATGTGTG‑ATAATAAATAATGTTTGACCATGTTCTAATACAATATACTGTAACAAATCCATCACtt                                        >  2:612498/1‑141 (MQ=255)

                                                                                       tatTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTG‑ATAATAAATAATGTTTGACCATGTTCTAATACAATATGCTGTAATAAATCCATCACtt                                        <  1:706531/141‑1 (MQ=255)

                                                                                            acTCGTTCTATGATTTGGCCTTCTTTTAAAACATAATTGCACTGACAATATTTACAGACATGACTTAAGTTATGTGTG‑ATAATAAATAATGTTTGACCATGTTCTAATACAATATGCTGTAATAAATCCATCACTTGATTa                                   <  1:68832/140‑1 (MQ=255)

                                                                                                      tGAGTTTACCTTCTTTTAAAGCATAATTTCACTGACAATATTGCAATACATGACTTAAGTTATGTGTG‑AGTATAAATTATTTTTGACCATGTTCTAATACAATATGCTGTAATAACTCCATCACTTGATTACCGTTCAAAg                         <  2:497192/141‑1 (MQ=255)

                                                                                                         tttGACCTTCTTTTAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTG‑ATAATAAATAATGTTTGACCATGTTCTAATACAATATGCTGTAATAAATCCATCACTTGATTACCGTTCAAAGCAt                      >  1:832199/1‑141 (MQ=255)

                                                                                                                tttttttAAAACATAATTGTACTGCCAATATTTACATACATGACCTAAG‑AATGTTTGAATAATAAATAATGTTTGACCATGTTCTAATACAATATGCTGTAATAAATCCATCACTTGATTACCGTTCAAAGCATCCAatga               <  1:274708/138‑1 (MQ=255)

                                                                                                                ttcttTTAAAACATAATTGTACTGACAATATTTCAATACATGTGTTCAGGTATGTGGG‑ATAATAAATAATGTTTGACCATGTTCTAATACAATATGCTGTAATAAATCCATCACTTGATTACCGTTCAAAGCATCCAatga               <  1:274696/141‑1 (MQ=255)

                                                                                                                   ttttAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTG‑ATAATAAATAATGTTTGACCATGTTCTAATACAATATGCTGTAATAAATCCATCACTTGATTACCGTTCAAAGCATCCAATGATGc            <  1:509260/141‑1 (MQ=255)

                                                                                                                   ttttAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTG‑ATAATAAATAATGTTTGACCATGTTCTAATACAATATGCTGTAATAAATCCATCACTTGATTACCGTTCAAAGCATCCAATGATGc            <  2:637478/141‑1 (MQ=255)

                                                                                                                   tcttAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTG‑ATAATAAATAATGTTTGACCATGTTCTAATACAATATGCTGTAATAAATCCATCACTTGATTACAGGTCAAAGCATCCAATGATGc            >  2:361744/3‑141 (MQ=255)

                                                                                                                    tttAAAACATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTG‑ATAATAAATAATGTTTGACCATGTTCTAATACAATATGCTGTAATAAATCCATCACTTGATTACCGTTCAAAGCATCCAATGATGCa           <  1:341367/141‑1 (MQ=255)

                                                                                                                       aaaaCATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTG‑ATAATAAATAATGTTTGACCATGTTCTAATACAATATGCTGTAATAAATCCATCACTTGATTACCGTTCAAAGCATCCAATGATGCAACt        <  1:434907/141‑1 (MQ=255)

                                                                                                                       aaaaCATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTG‑ATAATAAATAATGTTTGACCATGTTCTAATACAATATGCTGTAATAAATCCATCACTTGATTACCGTTCAAAGCATCCAATGATGCAACt        <  1:796537/141‑1 (MQ=255)

                                                                                                                       aaaaCATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTG‑ATAATAAATAATGTTTGACCATGTTCTAATACAATATGCTGTAATAAATCCATCACTTGATTACCGTTCAAAGCATCCAATGATGCAACt        <  1:289396/141‑1 (MQ=255)

                                                                                                                       aaaaCATAATTGTACTGACAATATCTCAATACATGACTTAAGTTATGTGTG‑ATAATAAATAATGTTTGACCATGTTCTAATACAATATGCTGTAATAAATCCATCACTTGATTACCGTTCAAAGCATCCAATGATGCAACt        <  1:181583/141‑1 (MQ=255)

                                                                                                                         aaCATAATTGTACTGACAATATTTCAATACATGTCTTAAGTTATGTGTG‑ATAATAAATAATGTTTGACCATGTTCTAATACAACATGCTGTAATAACTCCACCACTTGATTACCGTTCAAAGCATCCAATGATGCAACTgg      <  2:684243/141‑1 (MQ=255)

                                                                                                                         aaCATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTG‑ATAATAAATAATGTTTGACCATGTTCTAATACAATATGCTGTAATAAATCCATCACTTGATTACCGTTCAAAGCATCCAATGATGCAACTgg      <  2:422090/141‑1 (MQ=255)

                                                                                                                           cATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTG‑ATAATAAATAATGTTTGACCATGTTCTAATACAATATGCTGTAATAAATCCATCACTTGATTACCGTTCAAAGCATCCAATGATGCAACTGGtt    >  2:791946/1‑141 (MQ=255)

                                                                                                                           cATAATTGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTG‑ATAATAAATAATGTTTGACCATGTTCTAATACAATATGCTGTAATAAATCCATCACTTGATTACCGTTCAAAGCATCCAATGATGCAACTGGtt    >  2:603923/1‑141 (MQ=255)

                                                                                                                            aTAATTGTACTGACAATATTTCAATACATGACTTAAGTTATTTGTG‑ATAATAAATAATGTTTGACCATGTTCTAATACAATATGCTGTAATAAATCCATCACTTGATTACCGTTCAAAGCATCCAATGATGCAACTGGTTc   <  1:372433/141‑1 (MQ=255)

                                                                                                                             tAATTGTACGGACAAGATTTCAATACATGACTTAAGTTATGTGTG‑ATAATAAATAATGTTTGACCATGTTCTAATACAATATGCTGTAATAAATCCATCACTTGATTACCGTTCAAAGCATCCAATGATGCAACTGGTTCg  <  1:100989/141‑1 (MQ=255)

AATCATAGTAATCCCTCTTTAATTGTGTTCTATATTTAATTAGACGTTCAGTATACGGATGCAAATGCTCATACTTGAAATGATTAATATTACCTCGTTCAATGATTTGACCTTCTTTTAAAACATAAATGTACTGACAATATTTCAATACATGACTTAAGTTATGTGTG‑ATAATAAATAATGTTTGACCATGTTCTAATACAATATGCTGTAATAAATCCATCACTTGATTACCGTTCAAAGCATCCAATGATGCAACTGGTTCG  >  USA300TCH1516_ALE/1416330‑1416595

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A