Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F58 I0 R1	46	56.2	1222162	96.0%	1173275	141.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	USA300TCH1516_ALE	1,002,200	T→G	90.9%	M173R (ATG→AGG)	mecA →	Adapter protein MecA 1

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	USA300TCH1516_ALE	1,002,200	0	T	G	90.9%	192.7 / 5.2	62	M173R (ATG→AGG)	mecA	Adapter protein MecA 1
Reads supporting (aligned to +/- strand): ref base T (2/4); new base G (33/23); total (35/27)
Fisher's exact test for biased strand distribution p-value = 3.90e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.90e-01

AAGGTTCTAAACGTCAAAAGTCTTCAGCACGTAAAAATACAAGAACAATCATTGTGAAATTTAACGATTTAGA‑AGATGTTATTAATTATGCATATCATAGCAATCCAATAACTACAGAGTTTGAAGATTTGTTATATATGGTTGATGGTACTTATTATTATGCTGTATATTTTGATAGTCATGTTGATCAAGAAGTCATTAATGATAGTTACAGTCAATTGCTTGAATTTGCTTATCCAACAGACAGAACAGAAGTTTATTTAAATGACTATGCTAA  >  USA300TCH1516_ALE/1002062‑1002338

aaGGTTCTAAACGTCAAAAGTCTTCAGCACGTAAAAATACAAGAACAATCATTGTGACATTTAACGATTTAGA‑AGATGTTATTAATTATGCATATCATAGCAATCCAATAACTACAGAGTTTGAAGATTTGTTATATAggg                                                                                                                                          <  1:352112/141‑1 (MQ=255)

               aaaaGTCTTCAGGACGTAAAAATACAAGAATAATCATTGTGAAATTTAACGATTTAGA‑AGATGTTATTAATTATGCATATCATAGCAATCCAATAACTACAGAGTTTGAAGATTTGTTATATAGGGTTGATGGTACttatt                                                                                                                           <  1:503595/141‑1 (MQ=255)

               aaaaGTCTTCAGCACGTAAAAATACAAGAACAATCATTGTGAAATTTAACGATTTAGA‑AGATGTTATTAATTATGCATATCATACCAATCCAGTAACTACAGAGTTTGAAGATTTGTTATATAGGGTTGATGGTACttatt                                                                                                                           >  1:451158/1‑141 (MQ=255)

                  cgacTTCAGCACGTAAAAATACAAGAACAATCATTGTGAAATTTAACGATTTAGA‑AGATGTTATTAATTATGCATATCATAGCAATCCAATAACTACAGAGTTTGAAGATTTGTTATATAGGGTTGATGGTACttattatt                                                                                                                        >  2:374900/4‑141 (MQ=255)

                  aGTCTTCAGCACGTAAAAATACAAGAACAATCATTGTGAAATTTAACGATTTAGA‑AGATGTTATTAATTATGCATATCATAGCAATCCAATAACTACAGAGTTTGAAGATTTGTTATATAGGGTTGATGGTACttattatt                                                                                                                        >  1:386552/1‑141 (MQ=255)

                  aGTCTTCAGCACGTAAAAATACAAGAACAATCATTGTGAAATTTAACGATTTAGA‑AGATGTTATTAATTATGCATATCATAGCAATCCAATAACTACAGAGTTTGAAGATTTGTTATATAGGGTTGATGGTACttattatt                                                                                                                        >  1:398803/1‑141 (MQ=255)

                  aGTCTTCAGCACGTAAAAATACAAGAACAATCATTGTGAAATTTAACGATTTAGA‑AGATGTTATTAATTATGCATATCATAGCAATCCAATAACTACAGAGTTTGAAGATTTGTGATATAGGGTTGATGGTACttattatt                                                                                                                        >  1:386356/1‑141 (MQ=255)

                         aacACGTAAAGAGACAAGAACAATGATTGTGAAATTTAACGATTTAGA‑AGATGTTATTAATTATGCATATCATAGCAATCCAATAACTACAGAGTTTGAAGATTTTTTATATAGGGTTGATGGTACTTATTATTATGCTGt                                                                                                                 <  1:158824/139‑1 (MQ=255)

                          gCACGTAAAAATACAAGAACAATCATTGTGAAATTTAACGATTTAGA‑AGATGTTATTAATTATGCATATCATAGCAATCCAATAACTACAGAGTTTGAAGATTTGTTATATAGGGTTGATGGTACTTATTATTATGCTGta                                                                                                                >  1:532813/1‑141 (MQ=255)

                             cGTAAAAATACAAGAACAAACATTGTGAAATTTAACGATTTAGA‑AGATGTTATTAATTACGCATATCATAGCAATCCAATAACTACAGAGTTTGAAGATTTGTTATAGAGGGTTGATGGTACTTATTATTATGCTGTatat                                                                                                             >  2:341518/1‑141 (MQ=255)

                                aaaaaTACAAGAACACTCCTTGTGCAAGTTAACGTTTTAGA‑AGATGTTATTAATTATGCATATCATAGCAATCCAATAACTACAGAGTTTGAAGATTTGTTATATATGGTTGATGGTACCTATTATTATGCTGTATAtttt                                                                                                          <  1:317071/141‑1 (MQ=255)

                                aaaaaTACAAGAACAATCATTGTGAAATTTAACGATTTAGA‑AGATGTTATTAGTTATGCATATCATAGCAATCCAATAACTACAGAGTTTGAAGATTTGTTATATAGGGTTGATGGTACTTATTATTATGCTGTATAgttt                                                                                                          <  1:439492/141‑1 (MQ=255)

                                    aTACAAGAACAATCATTGTGAAATTTAACGATTTAGA‑AGATGTTATTAATTATGCATATCATAGCAATCCAATAACTACAGAGTTTGAAGATTTGTTATATAGGGTTGATGGTACTTATTATTATGCTGTATATTTTGATa                                                                                                      >  2:229186/1‑141 (MQ=255)

                                    aTACAAGAACAATCATTGTGAAATTTAACGATTTAGA‑AGATGTTATTAATTATGCATATCATAGCAATCCAATAACTACAGAGTTTGAAGATTTGTTATATAGGGTTGATGGTACTTATTATTATGCTGTATATTTTGATa                                                                                                      >  2:532888/1‑141 (MQ=255)

                                          aaaCAATCAGAGTGAAATTTAACGATTTAGA‑AGATGTTATTAATTATGCATATCATAGCAATCCAATAACTACAGAGTTTGAAGATTTGTTATATAGGGTTGATGGTACTTATTATTATGCTGTATATTTTGATAGTCATg                                                                                                <  2:198255/140‑1 (MQ=255)

                                           aaCAATCATTGTGAAATTTAACGTTTTAGA‑AGTTGTTATTAATTATGCCTATCATAGCAATCCAATAACTACAGAGTTTGAAGATTTGTTATATAGGGTTGATGGTACTTATTATTATGCTGTATATTTTGATAGTCATGt                                                                                               <  1:264/141‑1 (MQ=255)

                                           aaCAATCATTGTGAAATTTAACGATTTAGA‑AGATGTTATTAATTATGCATATCATAGCAATCCAATAACTACAGAGTTTGAAGATTTGTTATATAGGGTTGATGGTACTTGTTATTATGCTGTATATTTTGATAGTCATGt                                                                                               >  1:149686/1‑141 (MQ=255)

                                           aaCAATCATTGTGAAATTTAACGATTTAGA‑AGATGTTATTAATTATGCATATCATAGCAATCCAATAACTACAGAGTTTGAAGATTTGTTATATAGGGTTGATGGTACTTATTATTATGTTGTATATTTTGATAGTCATGt                                                                                               >  1:149719/1‑141 (MQ=255)

                                               aTCATTGTGAAATTTAACGATTTCGA‑AGAGGTTATTAATTATGCATATCATAGCAATCCAATAACTACAGAGTTTGAAGATTTGTTATATAGGGTTGATGGTACTTATTATTATGCTGTATATTTTGATAGTCATGTTGAt                                                                                           <  2:552916/141‑1 (MQ=255)

                                                 cATTGTGAAATTTAACGATTTAGACAGCTATT‑TGAATTATGCATATCATAGCAATCCAATAACTACAGAGTTTGAAGATTTGTTATATAGGGTTGATGGTACTTATTATTATGCTGTATATTTTGATAGTCATGTTGATCa                                                                                         >  1:296528/1‑141 (MQ=255)

                                                 cATTGTGAAATTTAACGATTTAGA‑AGATGTTATTAATTATGCATATCATAGCAAGCCAATAACTACAGAGTTTGAAGATTTGTTATATAGGGTTGATGGTACTTATTATTATGCTGTATATTTTGATAGTCATGTTGATCa                                                                                         >  1:394796/1‑141 (MQ=255)

                                                  aTTGTGAAATTTAACGATTTAGA‑AGATGTTATTAATTATGCATATCATAGCAATCCAATAACTACAGAGTTTGAAGATTTGTTATATAGGGTTGATGGTACTTATTATTATGCTGTATATTTTGATAGTCATGTTGATCaa                                                                                        <  1:122410/141‑1 (MQ=255)

                                                  aTTGTGAAATTTAACGATTTAGA‑AGATGTTATTAATTATGCATATCATAGCAATCCAATAACTACAGAGTTTGAAGATTTGTTATATAGGGTTGATGGTACTTATTATTATGCTGTATATTTTGATAGTCATGTTGATCaa                                                                                        <  1:122639/141‑1 (MQ=255)

                                                   ttGTGAAATTTAACGATTTAGA‑AGATGTTATTAATTATGCATATCATAGCAATCCAATAACTACAGAGTTTGAAGATTTGTTATATAGGGTTGATGGTACTTATTATTATGCTGTATATTTTGATAGTCATGTTAATCaag                                                                                       >  2:372197/1‑141 (MQ=255)

                                                        aaaTTTAACGATTTAGA‑AGATGTTATTAATTATGCATATCATAGCAATCCAATAACTACAGAGTTTGAAGATTTGTTATATAGGGTTGATGGTACTTATTATTATGCTGTATATTTTGATAGTCATGTTGATCAAGAAGTc                                                                                  <  2:532813/141‑1 (MQ=255)

                                                         aaTTTAACGATTTAGA‑AGATGTTATTAATTATGCATATCATAGCAATCCAATAACTACAGAGTTTGAAGATTTGTTATATAGGGTTGATGGTACTTATTATTATGCTGTATATTTTGATAGTCATGTTGATCAAGAAGTCa                                                                                 <  1:269769/141‑1 (MQ=255)

                                                           tttAACGATTTAGA‑AGATGTTATTAATTATGCATATCATAGCAATCCAATAACTACAGAGTTTGAAGATTTGTTATATAGGGTTGATGGTACTTATTATTATGCTGTATATTTTGATAGTCATGTTGATCAAGAAGTCAtt                                                                               <  2:537609/141‑1 (MQ=255)

                                                               aCGATTTAGA‑AGATGTTATTAATTATGCATATCATAGCAATCCAATAACTACAGAGTTTGAAGATTTGTTATATAGGGTTGATGGTACTTATTATTATGCTGTATATTTTGATAGTCATGTTGATCAAGAAGTCATTAATg                                                                           >  1:220730/1‑141 (MQ=255)

                                                                    ttAGA‑AGATGTTATTAATTATGCATATCATAGCAATCCAATAACTACAGAGTTTGAAGATTTGTTATATAGGGTTGATGGTACTTATTATTATGCTGTATATTTTGATAGTCATGTTGATCAAGAAGTCATTAATGATAGt                                                                      >  1:431670/1‑141 (MQ=255)

                                                                        a‑agaTGTTATTAATTATGCATATCATAGCAATCCAATAACTACAGAGTTTGAAGATTTGTTATATAGGGTTGATGGTACTTATTATTATGCTGTATATTTTGATAGTCATGTTGATCAAGAAGTCATTAATGATAGTTACa                                                                  <  1:349909/141‑1 (MQ=255)

                                                                            aTGTTATTAATTATGCATATCATAGCAATCCAATAACTACAGAGTTTGAAGATTTGTTATATATGGTTGATGGTACTTATTATTATGCTGTATAGTTTGATAGTCATGTTTATCAAGAAGTCATTAATGATAGTTACAGTc                                                               <  1:294304/141‑1 (MQ=255)

                                                                            aTGTTATTAATTATGCATATCATAGCAATCCAATAACTACAGAGTTTGAAGATTTGTTATATAGGGTTGATGGTACTTATTATTATGCTGTATATTTTGATAGTCATGTTGATCAAGAAGTCATTAATGGTGGTTAGAGTc                                                               >  1:154441/1‑141 (MQ=255)

                                                                               ttattaATTATGCATATCATAGCAATCCAATAACTACAGAGTTTGAAGATTTGTTATATATGGTTGATGGTACTTATTATTATGCTGTATATTTTGATAGTCATGTTGATCAAGAAGTCATTAATGATAGTTACAGTCAAt                                                            <  1:235971/141‑1 (MQ=255)

                                                                                   taattaTGCATATCATAGCAATCCAATAACTACAGAGTTTGAAGATTTGTTATATAGGGTTGATGGTACTTATTATTATGCTGTATATTTTGATAGTCATGTTGATCAAGAAGTCATTAATGATAGTTACAGTCAATTGCt                                                        >  1:279474/1‑141 (MQ=255)

                                                                                      ttaTGCATATCATAGCAATCCAATAACTACAGAGTTTGAAGATTTGTTATATAGGGTTGATGGTACTTATTATTATGCTGTATATTTTGATAGTCATGTTGATCAAGAAGTCATTAATGATAGTTACAGTCAATTGCTTGa                                                     >  1:193753/1‑141 (MQ=255)

                                                                                        aatcATATCATAGCAATCCAATAACTACAGAGTTTGAAGATTTGTTATATAGGGTTGATGGTACTTATTATTATGCTGTATATTTTGATAGTCATGTTGATCAAGAAGTCATTAATGATAGTTACGGTCAATTGCTTGAAt                                                   <  1:308071/138‑1 (MQ=255)

                                                                                                cATAGCAATCCAATAACTACAGAGTTTGAAGATTTGTTATATAGGGTTGATGGTACTTATTATTATGCTGTATATTTTGATAGTCATGTTGATCAAGAAGTCATTAATGATAGTTACAGTCAATTGCTTGAATTTGCTTAt                                           <  1:514652/141‑1 (MQ=255)

                                                                                                cATAGCAATCCAATAACTACAGAGTTTGAAGATTTGTTATATAGAGTTGATGGTACTTATTATTATGCTGTATATTTTGATAGTCATGTTGATCAAGAAGTCATTAATGATAGTTACAGTCAATTGCTTGAATTTGCTTAt                                           >  1:335539/1‑141 (MQ=255)

                                                                                                 aTAGCAATCCAATAACTACAGAGTTTGAAGATTTGTTATATAGGGTTGATGGTACTTATTATTATGCTGTATATTTTGATAGTCATGTTGATCAAGAAGTCATTAATGATAGTTACAGTCAATTGCTTGAATTTGCTTATc                                          <  2:225794/141‑1 (MQ=255)

                                                                                                    gCAATCCAATAACTACAGAGTTTGAAGATTTGTTATATAGGGTTGATGGTACTTATTATTATGCTGTATATTTTGATAGTCATGTTGATCAAGAAGTCATTAATGATAGTTACAGTCAATTGCTTGAATTTGCTTATCCaa                                       <  1:479596/141‑1 (MQ=255)

                                                                                                       aTCCAATAACTACAGAGTTTGAAGATTTGTTATATAGGGTTGATGGTACTTATTATTATGCTGTATATTTTGATAGTCATGTTGATCAAGAAGTCATTAATGATAGTTACAGTCAATTGATTGAATTTGCTTATCAAacag                                    >  2:266643/1‑141 (MQ=255)

                                                                                                          cAATAACTACAGAGTTTGAAGATTTGTTATATAGGGTTGATGGTACTTATTATTATGCTGTATATTTTGATAGTCATGTTGATCAAGAAGTCATTAATGATAGTTACAGTCAATTGCTTGAATTTGCTTATCCAacagaca                                 <  1:68276/141‑1 (MQ=255)

                                                                                                             tAACTACAGAGTTTGAAGATTTGTTATATATGGTTGATGGTACTTATTATTATGCTGGATATTTTGATAGTCATGTTGATCAAGAAGTCATTAATGATAGTTACAGTCAATTGCTTGAATTTGCTTATCCAACAGacagaa                              <  2:19438/141‑1 (MQ=255)

                                                                                                             tAACTACAGAGTTTGAAGATTTGTTATATAGGGTTGATGGTACTTATTATTATGCTGTATATTTTGATAGTCATGTTGATCAAGAAGTCATTAATGATAGTTACAGTCAATTGCTTGAATTTGCTTATCCAACAGacagaa                              >  1:546449/1‑141 (MQ=255)

                                                                                                                 tACAGAGTTTGAAGATTTGTTATATAGGGTTGATGGTACTTATTATTATGCTGTATATTTTGATAGTCATGTTGATCAAGAAGTCATTAATGATAGTTACAGTCAATTGCTTGAATTTGCTTATCCAACAGaaagaacaga                          >  2:224674/1‑141 (MQ=255)

                                                                                                                    agagTTTGAAGATTTGTTATATAGGGTTGATGGTACTTATTATTATGCTGTATATTTTGATAGTCATGTTGATCAAGAAGTCATTAATGATAGTTACAGTCAATTGCTTGAATTTGCTTATCCAACAGACAGAACAGAAGt                       <  1:229186/141‑1 (MQ=255)

                                                                                                                    agagTTTGAAGATTTGTTATATAGGGTTGATGGTACTTATTATTATGCTGTATATTTTGATAGTCATGTTGATCAAGAAGTCATTAATGATAGTTACAGTCAATTGCTTGAATTTGCTTATCCAACAGACAGAACAGAAGt                       <  1:532888/141‑1 (MQ=255)

                                                                                                                     gagTTTGAAGATTTGTTATATAGGGTTGATGGTACTTATTATTATGCTGTATATTTTGATAGTCATGTTGATCAAGAAGTCATTAATGATAGTTACAGTCAATTGCTTGAATTTGCTTATCCAACAGACAGAACAGAAGtt                      <  1:59459/141‑1 (MQ=255)

                                                                                                                       gTTTGAAGATTTGTTAGATATGGTTGATGGTACTTATTATTATGCTGTATATTTTGATAGTCATGTTGATCAAGAAGTCATTAATGATAGTTACAGTCAATTGCTTGAATTTGCTTATCCAACAGACAGAACAGAAGttta                    >  2:325143/1‑141 (MQ=255)

                                                                                                                        tttGAAGATTTGTTATATAGGGTTGATGGTACTTATTATTATGCTGTATATTTTGATAGTCATGTTGATCAAGAAGTCATTAATGATAGTTACAGTCAATTGCTTGAATTTGCTTATCCAACAGACAGAACAGAAGtctat                   <  1:439904/141‑1 (MQ=255)

                                                                                                                        tttGAAGATTTGTTATATAGGGTTGATGGTACTTATTATTATGCTGTATATTTTGAGAGTCATGTTGATCAAGAAGTCATTAATGATAGTTACAGTCAATTGCTTGAATTTGCTTATCCAACAGACAGAACAGAAGtttat                   <  2:487328/141‑1 (MQ=255)

                                                                                                                         ttGAAGATTTGTTATATAGGGTTGATGGTACTTATTATTATGCTGTATATTTTGATAGTCATGTTGATCAAGAAGTCATTAATGATAGTTACAGTCAATTGCTTGAATTTGCTTATCCAACAGACAGAACAGAAGtttatt                  >  2:192073/1‑141 (MQ=255)

                                                                                                                          tGAAGATTTGTTATATAGGGTTGATGGTACTTATTATTATGCTGTATATTTTGATAGTCATGTTGATCAAGAAGTCATTAATGATAGTTACAGTCAATTGCTTGAATTTGCTTATCCAACAGACAGAACAGAAGtttattt                 >  1:280034/1‑141 (MQ=255)

                                                                                                                           gAAGATTTGTTATATAGGGTTGATGGTACTTATTATTATGCTGTATATTTTGATAGTCATGTTGATCAAGAAGTCATTAATGATAGTTACAGTCAATTGCTTGAATTTGCTTATCCAACAGACAGAACAGAAGtttattta                >  1:496481/1‑141 (MQ=255)

                                                                                                                            aaGATTTGTTATATATGGTTGATGGTACTTATTATTATGCTGTATATTTTGATAGTCATGTTGATCAAGAAGTCATTAATGATAGTTACAGTCAATTGCTTGAATTTGCTTATCCAACAGACAGAACAGAAGTTTATTTaa               >  2:71857/1‑141 (MQ=255)

                                                                                                                            aaGATTTGTTATATAGGGTTGATGGTACTTATTATTATGCTGTATATTTTGATAGTCATGTTGATCAAGAAGTCATTAATGATAGTTACAGTCAATTGCTTGAATTTGCTTATCCAACAGACAGAACAGAAGTTTATTTaa               >  1:373589/1‑141 (MQ=255)

                                                                                                                            aaGATTTGTTATATAGGGTTGATGGTACGTATTATTATGCTGTATATTTTGATAGTCATGTTGATCAAGAAGTCATTAATGATAGTTACAGTCAATTGCTTGAATTTGCTTATCCAACAGACAGAACAGAAGTTTATTTaa               >  2:357499/1‑141 (MQ=255)

                                                                                                                               aTTTGTTATATAGGGTTGATGGTACTTATTATTATGCTGTATATTTTGATAGTCGTGTTGATCAAGAAGTCATTAATGATAGTTACAGTCAATTGCTTGAATTTGCTTATCCAACAGACAGAACAGAAGTTTCTTTaaacg            <  2:451158/141‑3 (MQ=255)

                                                                                                                                 ttGTTATATAGGGTTGATGGTACTTATTATTATGCTGTATATTTTGATAGTCATGTTGATCAAGAAGTCATTAATGATAGTTACAGTCAATTGCTTGAATTTGCTTATCCAACAGACAGAACAGAAGTTTATTTAAATGAc          >  1:524434/1‑141 (MQ=255)

                                                                                                                                 ttGTTATATAGGGTTGATGGTACTTATTATTATGCTCTATATTTTGATAGTCATGTTGATCAAGAAGTCATTAATGATAGTTACAGTCAATTGCTTGAATTTGCTTATCCAACAGACATAACAGAAGTTTATTTAAATGAc          >  1:423249/1‑141 (MQ=255)

                                                                                                                                  tGTTATATAGGGTTGATGGTACTTATTATTATGCTGTATATTTTGATAGTCATGTTGATCAAGAAGTCATTAATGATAGTTACAGTCAATTGCTTGAATTTGCTTATCCAACAGACAGAACAGAAGTTTATTTAAATGACt         >  2:389732/1‑141 (MQ=255)

                                                                                                                                    ttATATAGGGTTGATGGTACTTATTATTATGCTGTATATTTTGATAGTCATGTTGATCAAGAAGTCATTAATGATAGTTACAGTCAATTGCTTGAATTTGCTTATCCAACAGACAGAACAGAAGTTTATTTAAATgtgtat       >  2:349874/1‑136 (MQ=255)

                                                                                                                                    ttATATAGGGTTGATGGTACTTATTATTATGCTGTATATTTTGATAGTCATGTTGATCAAGAAGTCATTAATGATAGTTACAGTCAATTGCTTGAATTTGCTTATCCAACAGACAGAACAGAAGTTTATTTAAATGACTAt       >  2:186289/1‑141 (MQ=255)

                                                                                                                                       tatagGGTTGATGGTACTTATTATTATGCTGTATATTTTGATAGTCATGTTGATCAAGAAGTCATTAATGATAGTTACAGTCAATTGCTTGAATTTGCTTATCCAACAGACAGAACAGAAGTTTATTTAAATGACTATGCt    <  1:303864/141‑1 (MQ=255)

                                                                                                                                         tatGGTTGATGGTACTTATGATTATGCTGTATATTTTGATAGTCATGTTGATCAAGAAGTCATTAATGATAGTTACAGTCAATTGCTTGAATTTGCTTATCCAACAGACAGAACAGAAGTTTATTTAAATGACTATGCTaa  <  1:9227/141‑1 (MQ=255)

AAGGTTCTAAACGTCAAAAGTCTTCAGCACGTAAAAATACAAGAACAATCATTGTGAAATTTAACGATTTAGA‑AGATGTTATTAATTATGCATATCATAGCAATCCAATAACTACAGAGTTTGAAGATTTGTTATATATGGTTGATGGTACTTATTATTATGCTGTATATTTTGATAGTCATGTTGATCAAGAAGTCATTAATGATAGTTACAGTCAATTGCTTGAATTTGCTTATCCAACAGACAGAACAGAAGTTTATTTAAATGACTATGCTAA  >  USA300TCH1516_ALE/1002062‑1002338

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A