Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F2 I1 R1
|
2892 |
75.3 |
5698161 |
66.1% |
3766484 |
59.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
Exported |
706,680 |
C→T |
68.0% |
R244K (AGG→AAG) |
lpxL ← |
lauryl‑acyl carrier protein (ACP)‑dependent acyltransferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | Exported | 706,680 | 0 | C | T | 68.0%
| 85.5
/ 57.9
| 75 | R244K (AGG→AAG) | lpxL | lauryl‑acyl carrier protein (ACP)‑dependent acyltransferase |
| Reads supporting (aligned to +/- strand): ref base C (11/13); new base T (25/26); total (36/39) |
| Fisher's exact test for biased strand distribution p-value = 8.10e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TCGGCATCATCCAGTGGCGGAGAACACTCTGGCGGCAGCATAATCAATTGATACCCTTTGCCATCTGGCCTACGGCGTGGAACGAAGGGCACCAGACATGCGCCGGACATCCGTGCCAGCATCCAGGTTCCGGTCGTGGT > Exported/706611‑706750
|
tCGGCATCATCCAGTGGCGGAGAACACTCTGGCGGCAGCATAATCAATTGATACCCTTTGCCATCTGGcc > 1:405395/1‑70 (MQ=255)
tCGGCATCATCCAGTGGCGGAGAACACTCTGGCGGCAGCATAATCAATTGATACCCTTTGCCATCTGGcc > 1:4435626/1‑70 (MQ=255)
ggCATCATCCAGTGGCGGAGAACACTCTGGCGGCAGCATAATCAATTGATACCCTTTGCCATCTGGCTTAc < 1:3330071/71‑1 (MQ=255)
ggCATCATCCAGTGGCGGAGAACACTCTGGCGGCAGCATAATCAATTGATACCCTTTGCCATCTGGCTTAc > 1:683211/1‑71 (MQ=255)
gCATCATCCAGTGGCGGAGAACACTCTGGCGGCAGCATAATCAATTGATACCCTTTGCCATCTGGCTTACg < 1:1480346/71‑1 (MQ=255)
atcatcCAGTGGCGGAGAACACTCTGGCGGCAGCATAATCAATTGATACCCTTTGCCATCTGGCTTACGGc < 1:1499191/71‑1 (MQ=255)
atcCAGTGGCGGAGAACACTCTGGCGGCAGCATAATCAATTGATACCCTTTGCCATCTGGCTTACGGCGt < 1:5252444/70‑1 (MQ=255)
atcCAGTGGCGGAGAACACTCTGGCGGCAGCATAATCAATTGATACCCTTTGCCATCTGGCCTACGGCGTg < 1:5070866/71‑1 (MQ=255)
tcCAGTGGCGGAGAACACTCTGGCGGCAGCATAATCAATTGATACCCTTTGCCATCTGGCTTACGGCGTgg < 1:1929517/71‑1 (MQ=255)
tcCAGTGGCGGAGAACACTCTGGCGGCAGCATAATCAATTGATACCCTTTGCCATCTGGCCTACGGCGTg > 1:4177524/1‑70 (MQ=255)
cAGTGGCGGAGAACACTCTGGCGGCAGCATAATCAATTGATACCCTTTGCCATCTGGCTTAc > 1:5202729/1‑62 (MQ=255)
cAGTGGCGGAGAACACTCTGGCGGCAGCATAATCAATTGATACCCTTTGCCATCTGGCTTACGGCGTGGaa > 1:771878/1‑71 (MQ=255)
gTGGCGGAGAACACTCTGGCGGCAGCATAATCAATTGATACCATTTGCCATCTGGCTTa < 1:230162/59‑1 (MQ=255)
ggCGGAGAACACTCTGGCGGCAGCATAATCAATTGATACCCTTTGCCATCTGGCTTACGGCGTGGAACg > 1:3848430/1‑69 (MQ=255)
gagaACACTCTGGCGGCAGCATAATCAATTGATACCCTTTGCCATCTGGCCTACGGCGTGGAACg < 1:4786069/65‑1 (MQ=255)
gaACACTCTGGCGGCAGCATAATCAATTGATACCCTTTGCCATCTGGCCTACGGCGt > 1:3396214/1‑57 (MQ=255)
aaCACTCTGGCGGCAGCATAATCAATTGATACCCTTTGCCATCTGGCCTACGGCGTGGAACGaa < 1:2719641/64‑1 (MQ=255)
aaCACTCTGGCGGCAGCATAATCAATTGATACCCTTTGCCATCTGGCCTACGGCGTGGAACGaa < 1:2869639/64‑1 (MQ=255)
cacTCTGGCGGCAGCATAATCAATTGATACCCTTTGCCATCTGGCTTACGGCGTGGAACGAAGGGCAc > 1:2065220/1‑68 (MQ=255)
cacTCTGGCGGCAGCATAATCAATTGATACCCTTTGCCATCTGGCTTACGGCGTGGAACGAAGGGCACCAg < 1:2078512/71‑1 (MQ=255)
ctGGCGGCAGCATAATCAATTGATACCCTTTGCCATCTGGCCTACGGCGTGGAACGAAGGGCACCAGACAt > 1:3312363/1‑71 (MQ=255)
ctGGCGGCAGCATAATCAATTGATACCCTTTGCCATCTGGCCTACGGCGTGGAACGAAGGGCACCAGACAt > 1:1433572/1‑71 (MQ=255)
tGGCGGCAGCATAATCAATTGATACCCTTTGCCATCTGGCTTACGGCGTGGAACGAAGGGCACCAGACATg > 1:2262814/1‑71 (MQ=255)
tGGCGGCAGCATAATCAATTGATACCCTTTGCCATCTGGCCTACGGCGTgg < 1:4540582/51‑1 (MQ=255)
tGGCGGCAGCATAATCAATTGATACCCTTTGCCATCTGGCCTACGGCGTgg < 1:3965942/51‑1 (MQ=255)
tGGCGGCAGCATAATCAATTGATACCCTTTGCCATCTGGCCTACGGCGTgg < 1:2592606/51‑1 (MQ=255)
tGGCGGCAGCATAATCAATTGATACCCTTTGCCATCTGGCCTACGGCGTGGAACGAAGGGCACCAGACATg > 1:859981/1‑71 (MQ=255)
tGGCGGCAGCATAATCAATTGATACCCTATGCCATCTGGCCTACGGCGTGGAACGAAGGGCACCAGACATg > 1:1003549/1‑71 (MQ=255)
gcggcAGCATAATCAATTGATACCCTTTGCCATCTGGCTTACGGCGTGGAACGAAGGGCACCAGACATgcg < 1:870674/71‑1 (MQ=255)
gcggcAGCATAATCAATTGATACCCTTTGCCATCTGGCTTACGGCGTGGAACGAAGGGCACCAGACATgc < 1:2143725/70‑1 (MQ=255)
gcggcAGCATAATCAATTGATACCCTTTGCCATCTGGCTTACGGCGTGGAACGAAGGGCACCAGACATgc < 1:4120916/70‑1 (MQ=255)
ggcAGCATAATCAATTGATACCCTTTGCCATCTGGCTTACGGCGTGGAACGAAGGGCACCAGACATgcgc < 1:3707976/70‑1 (MQ=255)
gcaTAATCAATTGATACCCTTTGCCATCTGGCTTACGGCGTGGAACGAAggg < 1:5687728/52‑1 (MQ=255)
caTAATCAATTGATACCCTTTGCCATCTGGCTTACGGCGTGGAACGAAGGGCAc < 1:5686564/54‑1 (MQ=255)
caTAATCAATTGATACCCTTTGCCATCTGGCTTACGGCGTGGAACGAAGGGCAc < 1:1332793/54‑1 (MQ=255)
aTAATCAATTGATACCCTTTGCCATCTGGCCTACGGCGTGGAACGAAGGGCACCAGACATGCGCCGGACAt > 1:1883669/1‑71 (MQ=255)
tAATCAATTGATACCCTTTGCCATCTGGCTTACGGCGTGGAACGAAGGGCACCAGACATGCGCCGGACATc < 1:1732411/71‑1 (MQ=255)
tAATCAATTGATACCCTTTGCCATCTGGCTTACGGCGTGGAACGAAGGGCACCAGACATGCGCCGGACATc < 1:498099/71‑1 (MQ=255)
tAATCAATTGATACCCTTTGCCATCTGGCTTACGGCGTGGAACGAAGGGCACCAGACATGCGCCGGACATc < 1:1488989/71‑1 (MQ=255)
tAATCAATTGATACCCTTTGCCATCTGGCCTACGGCGTGGAACGAAGGGc > 1:29518/1‑50 (MQ=255)
aTCAATTGATACCCTTTGCCATCTGGCTTACGGCGTGGAACGAAGGGCACCAGACa > 1:492608/1‑56 (MQ=255)
aTCAATTGATACCCTTTGCCATCTGGCTTACGGCGTGGAACGAAGGGCACCAGACa > 1:5666328/1‑56 (MQ=255)
aTCAATTGATACCCTTTGCCATCTGGCTTACGGCGTGGAACGAAGGGCACCAGACa > 1:2173836/1‑56 (MQ=255)
aTCAATTGATACCCTTTGCCATCTGGCTTACGGCGTGGAACGAAGGGCACCAGACa > 1:1464473/1‑56 (MQ=255)
aTCAATTGATACCCTTTGCCATCTGGCTTACGGCGTGGAACGAAGGGCACCAGACa > 1:252752/1‑56 (MQ=255)
aTCAATTGATACCCTTTGCCATCTGGCTTACGGCGTGGAACGAAGGGCACCAGACa > 1:2489365/1‑56 (MQ=255)
aTCAATTGATACCCTTTGCCATCTGGCTTACGGCGTGGAACGAAGGGCACCAGACa > 1:4166294/1‑56 (MQ=255)
aTCAATTGATACCCTTTGCCATCTGGCTTACGGCGTGGAACGAAGGGCACCAGACATGCGCCGGACATCCg > 1:4814013/1‑71 (MQ=255)
aTCAATTGATACCCTTTGCCATCTGGCTTACGGCGTGGAACGAAGGGCACCAGACATGCGCCGGACATCCg > 1:67273/1‑71 (MQ=255)
ttGATACCCTTTGCCATCTGGCTTACGGCGTGGAACGAAGGGCACCAGACAt < 1:5338626/52‑1 (MQ=255)
ttGATACCCTTTGCCATCTGGCTTACGGCGTGGAACGAAGGGCACCAGACAt < 1:1889321/52‑1 (MQ=255)
ttGATACCCTTTGCCATCTGGCTTACGGCGTGGAACGAAGGGCACCAGACATGCGCCGGACATCCGTGc > 1:1376289/1‑69 (MQ=255)
gATACCCTTTGCCATCTGGCTTACGGCGTGGAACGa > 1:1777895/1‑36 (MQ=255)
gATACCCTTTGCCATCTGGCTTACGGCGTGGAACGAAGGGCACCAGACAt > 1:2483225/1‑50 (MQ=255)
gATACCCTTTGCCATCTGGCTTACGGCGTGGAACGAAGGGCACCAGACAt > 1:2055499/1‑50 (MQ=255)
aTACCCTTTGCCATCTGGCTTACGGCGTGGAACGAAGGGCACCAGACATGCGCCGGACATCCGTGCCAGc < 1:3215081/70‑1 (MQ=255)
aTACCCTTTGCCATCTGGCTTACGGCGTGGAACGAAGGGCACCAGACATGCGCCGGACATCCGTGCCAGCa > 1:421786/1‑71 (MQ=255)
cccTTTGCCATCTGGCCTACGGCGTGGAACGAAGGGCACCAGACATGCGCCGGACATCCGTGCCAGCATcc < 1:4090322/71‑1 (MQ=255)
cccTTTGCCATCTGGCCTACGGCGTGGAACGAAGGGCACCAGACATGCGCCGGACATCCGTGCCAGCATc < 1:5008766/70‑1 (MQ=255)
cccTTTGCCATCTGGCCTACGGCGTGGAACGAAGGGCACCAGACATGCGCCGGACATCCGTGCCAGCATc < 1:2598863/70‑1 (MQ=255)
cccTTTGCCATCTGGCCTACGGCGTGGAACGAAGGGCACCAGACATGCGCCGGACATCCGTGCCAGCATc < 1:3551589/70‑1 (MQ=255)
ccTTTGCCATCTGGCCTACGGCGTGGAACGAAGGGCACCAGACATGCGCCGGACATCCGTGCCAGCATc < 1:4203195/69‑1 (MQ=255)
gCCATCTGGCCTACGGCGTGGAACGAAGGGCA‑CAGACATGCGCCGGACATCCGTGCCAGCATCCAGGTTc < 1:574531/70‑1 (MQ=255)
aTCTGGCTTACGGCGTGGAACGAAGGGCACCAGACATGCGCCg < 1:4088636/43‑1 (MQ=255)
aTCTGGCTTACGGCGTGGAACGAAGGGCACCAGACATGCGCCGGa < 1:2283814/45‑1 (MQ=255)
aTCTGGCTTACGGCGTGGAACGAAGGGCACCAGACATGCGCCGGa < 1:3267296/45‑1 (MQ=255)
aTCTGGCTTACGGCGTGGAACGAAGGGCACCAGACATGCGCCGGACATc < 1:3603419/49‑1 (MQ=255)
aTCTGGCTTACGGCGTGGAACGAAGGGCACCAGACATGCGCCGGACATCCGTGCCAGCATCCAGGt < 1:1354604/66‑1 (MQ=255)
aTCTGGCTTACGGCGTGGAACGAAGGGCACAAGACATGCGCCGGACATCCGTGCCAGCATCCAGGt < 1:4751659/66‑1 (MQ=255)
cTGGCTTACGGCGTGGAACGAAGGGCACCAGACATGCGCCGGa > 1:1847570/1‑43 (MQ=255)
cTGGCTTACGGCGTGGAACGAAGGGCACCAGACATGCGCCGGa > 1:4952296/1‑43 (MQ=255)
cTGGCTTACGGCGTGGAACGAAGGGCACCAGACATGCGCCGGa > 1:3954867/1‑43 (MQ=255)
cTGGCTTACGGCGTGGAACGAAGGGCACCAGACATGCGCCGGACa > 1:821757/1‑45 (MQ=255)
tGGCTTACGGCGTGGAACGAAGGGCACCAGACATGCGCCGGACATCCGTGCCAGCATCCAGGTTCCGGTCg > 1:3304611/1‑71 (MQ=255)
tGGCCTACGGCGTGGAACGAAGGGCACCAGACATGCGCCGGACATCCGTGCCAGCATCCAGGTTCCGGTCg > 1:5241956/1‑71 (MQ=255)
tGGCCTACGGCGTGGAACGAAGGGCACCAGACATGCGCCGGACATCCGTGCAAGCATCCAGGTTCCGGTCg > 1:4517339/1‑71 (MQ=255)
tGGCCTACGGCGTGGAACGAAGGGCACCAGACATGCGCCGGACATCCGTGACAGCATCCAGGTTCCGGTCg > 1:4353489/1‑71 (MQ=255)
ccTACGGCGTGGAACGAAGGGCACCAGACATGCGCCGGACATCCGTGCCAGCATCCAGGTTCCGGTCGTgg > 1:397122/1‑71 (MQ=255)
cTACGGCGTGGAACGAAGGGCACCAGACATGCGCCGGACATCCGTGCCAGCATCCAGGTTCCGGTCGTGGt < 1:2555206/71‑1 (MQ=255)
|
TCGGCATCATCCAGTGGCGGAGAACACTCTGGCGGCAGCATAATCAATTGATACCCTTTGCCATCTGGCCTACGGCGTGGAACGAAGGGCACCAGACATGCGCCGGACATCCGTGCCAGCATCCAGGTTCCGGTCGTGGT > Exported/706611‑706750
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
