Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F17 I0 R2
|
162 |
60.6 |
4616657 |
98.5% |
4547407 |
62.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| MC JC |
W3110S.gb |
2,176,983 |
Δ1,199 bp |
100% |
|
[gatA]–[gatA] |
[gatA], insH, [gatA] |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
W3110S.gb |
2176983–2178180 |
2178181 |
2–1199 |
60 [0] |
[0] 60 |
[gatA]–[gatA] |
[gatA],insH,[gatA] |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
W3110S.gb |
= 2176982 | 0 (0.000) | 41 (0.910) |
30/92 |
NT |
100% |
coding (71/321 nt) |
gatA |
galactitol‑specific enzyme IIA component of PTS |
| ? | W3110S.gb |
2178182 = |
0 (0.000) | coding (202/315 nt) |
gatA |
galactitol‑specific enzyme IIA component of PTS |
GATK/CNVnator alignment
N/A
