Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I3 R2
|
489 |
0.0 |
1652083 |
58.3% |
963164 |
55.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
2,146,005 |
A→G |
T201T (ACA→ACG) |
yegE → |
predicted diguanylate cyclase, GGDEF domain signalling protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 2,146,005 | 0 | A | G | 99.6%
| 756.2
/ ‑5.7
| 258 | T201T (ACA→ACG) | yegE | predicted diguanylate cyclase, GGDEF domain signalling protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (0/257); minor base T (0/1); total (0/258) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.81e-01 |
Only 100 of 258 total aligned reads displayed.
ACCCACGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACACTGACGTTAAGCTGGCTT > W3110S.gb/2145962‑2146023
|
aCCCAAGGTTGCTTTTTGAGTCTCTGCTCACGTTAGCAATCACGCTGACGTTAAGCTGGCtt < 1:1410622/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACTCTGACGTTAAGCTGGCtt < 1:1218996/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:586350/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:704914/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:681379/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:678662/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:672359/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:647912/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:643693/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:638771/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:635274/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:627523/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:616826/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:762263/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:58034/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:547097/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:524227/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:521828/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:489618/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:488012/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:479485/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:472792/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:44369/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:405913/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:372069/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:852033/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:985102/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:983110/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:959743/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:954543/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:921745/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:914426/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:898430/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:889015/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:885726/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:884748/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:854080/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:746940/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:830362/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:82495/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:821292/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:816652/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:812932/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:803852/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:799701/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:788443/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:774725/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:1008410/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:1256703/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:1569614/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:1563421/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:1552414/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:1195749/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:1531080/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:120210/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:1491817/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:1238057/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:1584674/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:143082/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:142069/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:1399151/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:1366712/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:1342300/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:1326036/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:1293338/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:206819/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:334715/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:295350/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:286840/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:100218/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:260596/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:101801/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:1020591/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:201724/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:1078875/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:1086114/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:1123394/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:1625813/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:1155716/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:1600271/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGCTGCGCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:41700/62‑1 (MQ=255)
aCCCAAGGTTGCTTTTTGAGTCGATGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:1458553/62‑1 (MQ=255)
cccAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:362350/61‑1 (MQ=255)
cccAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:993759/61‑1 (MQ=255)
cccAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:278359/61‑1 (MQ=255)
cccAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:229914/61‑1 (MQ=255)
cccAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:1045618/61‑1 (MQ=255)
cccAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:9414/61‑1 (MQ=255)
cccAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:1066161/61‑1 (MQ=255)
cccAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:192661/61‑1 (MQ=255)
cccAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:1617280/61‑1 (MQ=255)
cccAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:1168198/61‑1 (MQ=255)
cccAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:858478/61‑1 (MQ=255)
cccAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:1509569/61‑1 (MQ=255)
cccAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:1482006/61‑1 (MQ=255)
cccAAGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:1272476/61‑1 (MQ=255)
gTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:1643176/55‑1 (MQ=255)
tGCTTTTTGAGTCGCTGCTCACGTTAGCAATCACGCTGACGTTAAGCTGGCtt < 1:548323/53‑1 (MQ=39)
cGCTGCTCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:666376/41‑1 (MQ=255)
tCACGTTAGCCATCACGCTGACGTTAAGCTGGCtt < 1:253081/35‑1 (MQ=255)
|
ACCCACGGTTGCTTTTTGAGTCGCTGCTCACGTTAGCCATCACACTGACGTTAAGCTGGCTT > W3110S.gb/2145962‑2146023
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
