Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I3 R2
|
489 |
0.0 |
1652083 |
58.3% |
963164 |
55.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
2,178,825 |
T→A |
I277I (ATA→ATT) |
gatZ ← |
D‑tagatose 1,6‑bisphosphate aldolase 2, subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 2,178,825 | 0 | T | A | 92.2%
| 471.1
/ 21.3
| 179 | I277I (ATA→ATT) | gatZ | D‑tagatose 1,6‑bisphosphate aldolase 2, subunit |
| Reads supporting (aligned to +/- strand): ref base T (14/0); new base A (165/0); total (179/0) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 |
Only 100 of 180 total aligned reads displayed.
TGCAAATATCGCCTCGCGTAAAGCAAAGGTTAATGCGGGACCGACTTTCAATATTGCAAAGTGATCGCGGACTAATTCCCAATAAGCCGTCCGGGTCT > W3110S.gb/2178774‑2178871
|
cgCAAATATCGCCTCGCGTAACGCTAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:1273079/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAGTGCCGGACCGACTTTCAAAATTg > 1:917740/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACTGACTTTCAAAATTg > 1:33538/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAAtt > 1:672315/2‑55 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAAtt > 1:1180343/2‑55 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:525117/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:258378/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:521083/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:500864/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:497995/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:487833/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:465988/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:459519/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:929758/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:445624/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:952454/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:414174/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:954175/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:358616/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:355814/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:326652/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:296703/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:2877/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:278625/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:2767/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:215735/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:731744/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:896408/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:882444/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:871948/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:921220/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:843539/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:808534/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:789309/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:783864/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:755267/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:738735/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:550344/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:714197/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:711929/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:686828/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:668645/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:659245/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:644647/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:627109/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:561687/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:551423/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:1163915/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:1335886/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:223710/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:1301864/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:1272069/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:125765/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:1250261/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:123873/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:1212880/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:1201326/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:1177935/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:1317146/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:1149161/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:1139848/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:1139331/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:1132424/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:1116328/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:1102613/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:1083053/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:1066422/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:1047519/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:1004129/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:1357567/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:968169/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:202202/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:171787/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:1572068/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:1551340/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:1546127/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:1506736/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:1499983/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:1475471/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:146739/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:1456931/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:987211/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:1438102/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:1427076/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:1426197/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:1420191/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:1340907/2‑56 (MQ=255)
cgCAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTGCAAAg > 1:11239/2‑61 (MQ=255)
cgCAAATATCGCCT‑GCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:823996/2‑55 (MQ=255)
cgCAAATATCGACTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAAtt > 1:1464286/2‑55 (MQ=255)
cacAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:1088266/3‑56 (MQ=255)
cacAAATATCGCCTCGCGTAACGCAAAGGTTAATGCCGGACCGACTTTCAAAATTg > 1:1391522/3‑56 (MQ=255)
ggACCGACTTTCAATATTGCAAAGTGATCGCGGACTAATTCCCAATAAGCCGTCCGGGTCt > 1:993975/1‑61 (MQ=255)
ggACCGACTTTCAATATTGCAAAGTGATCGCGGACTAATTCCCAATAAGCCGTCCGGGTCt > 1:850628/1‑61 (MQ=255)
ggACCGACTTTCAATATTGCAAAGTGATCGCGGACTAATTCCCAATAAGCCGTCCGGGTCt > 1:45145/1‑61 (MQ=255)
ggACCGACTTTCAATATTGCAAAGTGATCGCGGACTAATTCCCAATAAGCCGTCCGGGTCt > 1:431597/1‑61 (MQ=255)
ggACCGACTTTCAATATTGCAAAGTGATCGCGGACTAATTCCCAATAAGCCGTCCGGGTCt > 1:400735/1‑61 (MQ=255)
ggACCGACTTTCAATATTGCAAAGTGATCGCGGACTAATTCCCAATAAGCCGTCCGGGTCt > 1:212168/1‑61 (MQ=255)
ggACCGACTTTCAATATTGCAAAGTGATCGCGGACTAATTCCCAATAAGCCGTCCGGGTCt > 1:1447005/1‑61 (MQ=255)
ggACCGACTTTCAATATTGCAAAGTGATCGCGGACTAATTCCCAATAAGCCGTCCGGGTCt > 1:1007788/1‑61 (MQ=255)
|
TGCAAATATCGCCTCGCGTAAAGCAAAGGTTAATGCGGGACCGACTTTCAATATTGCAAAGTGATCGCGGACTAATTCCCAATAAGCCGTCCGGGTCT > W3110S.gb/2178774‑2178871
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
