Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I3 R2
|
489 |
0.0 |
1652083 |
58.3% |
963164 |
55.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
2,214,030 |
T→A |
C533S (TGT→AGT) |
yehQ → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 2,214,030 | 0 | T | A | 100.0%
| 230.3
/ NA
| 82 | C533S (TGT→AGT) | yehQ | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base A (82/0); total (82/0) |
CCTTATGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGTGTCTG > W3110S.gb/2213976‑2214035
|
ccTTTTGCCGTTGAACGCATGGCGGCGTTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:1402968/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:414817/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:634489/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:564036/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:531502/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:529294/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:481800/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:47254/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:447258/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:444567/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:435838/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:653387/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:410953/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:382026/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:371557/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:352095/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:319463/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:301019/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:284505/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:279443/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:271945/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:791811/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:985167/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:950650/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:948543/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:943631/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:940396/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:938230/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:888372/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:870149/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:830874/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:826238/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:22612/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:790748/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:785567/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:733915/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:72712/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:725942/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:712619/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:709693/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:688751/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:671352/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:1129465/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:1252972/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:125025/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:1241732/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:1232536/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:1230253/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:1214312/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:1175475/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:1160100/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:1157286/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:1253958/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:1111457/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:1093647/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:1091102/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:1065982/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:1059037/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:1047734/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:1028432/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:1014532/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:1008051/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:1560883/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:211566/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:209385/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:165177/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:1644642/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:1626229/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:161831/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:1602528/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:1597331/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:1580879/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:1007530/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:1534497/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:1501871/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:1499565/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:1427847/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:1389026/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:1375585/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:1358130/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:13258/1‑60 (MQ=255)
ccTTTTGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGAGTCTg > 1:1295682/1‑60 (MQ=255)
|
CCTTATGCCGTTGAACGCATGGCGGCGCTTTTGCAACAAACAGACGACCCCGTGTGTCTG > W3110S.gb/2213976‑2214035
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
