Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I2 R1
|
721 |
0.0 |
1472758 |
54.8% |
807071 |
56.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
820,121 |
C→T |
R135R (CGC→CGT) |
moaE → |
molybdopterin synthase, large subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 820,121 | 0 | C | T | 100.0%
| 330.9
/ NA
| 118 | R135R (CGC→CGT) | moaE | molybdopterin synthase, large subunit |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (0/118); total (0/118) |
Only 100 of 118 total aligned reads displayed.
GCCGGAAGGCGACCGCTGGGTTGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTGG > W3110S.gb/820106‑820166
|
ctcGGAAGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:1407309/59‑1 (MQ=39)
tcGGAAGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:836247/59‑1 (MQ=39)
aaGGTGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:1436595/56‑1 (MQ=38)
aaGGCGACGGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:280770/56‑1 (MQ=38)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGGTCAGCAGGCGGCAAAACGCTgg < 1:959008/56‑1 (MQ=38)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGGAAAACGCTgg < 1:993555/56‑1 (MQ=255)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:693689/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:365146/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:65024/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:629511/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:626962/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:609122/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:590005/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:555468/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:521926/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:507384/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:500939/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:491719/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:465062/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:458098/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:457737/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:437223/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:416094/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:403712/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:394475/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:3696/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:36013/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:85373/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:961091/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:957471/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:950664/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:941447/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:924775/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:91338/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:905605/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:891226/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:881459/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:868343/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:863498/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:694097/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:835852/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:826890/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:774183/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:773975/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:721743/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:715225/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:714578/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:705067/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:70122/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:695648/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:1210281/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:1358809/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:1349530/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:1317931/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:131555/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:1293268/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:1290486/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:1286459/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:1270261/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:1243311/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:1241339/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:1239581/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:1232714/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:1361064/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:1204040/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:1192545/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:1191886/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:1181771/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:1153052/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:1149744/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:1113453/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:110802/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:10996/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:1077438/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:1044591/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:190041/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:305158/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:295365/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:289676/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:287470/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:287365/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:284562/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:274925/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:272390/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:258565/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:229097/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:204821/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:1018473/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:177372/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:1462924/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:1445044/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:1439584/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:1429196/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:1422157/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:1376854/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:1362972/56‑1 (MQ=39)
aaGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGACAAAACGCTgg < 1:471308/56‑1 (MQ=255)
aGGCGACCGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:55557/55‑1 (MQ=39)
gACCGTTGGGTCGAAGCGCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:668495/51‑1 (MQ=37)
ccGTTGGGTCGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTgg < 1:162399/49‑1 (MQ=38)
|
GCCGGAAGGCGACCGCTGGGTTGAAGCTCGGGAGAGCGATCAGCAGGCGGCAAAACGCTGG > W3110S.gb/820106‑820166
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
