Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I2 R1
|
721 |
0.0 |
1472758 |
54.8% |
807071 |
56.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
1,857,653 |
A→T |
I11I (ATT→ATA) |
ydjG ← |
predicted oxidoreductase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 1,857,653 | 0 | A | T | 100.0%
| 174.9
/ NA
| 63 | I11I (ATT→ATA) | ydjG | predicted oxidoreductase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base T (0/63); total (0/63) |
CCAATGGCCCATGTCCCCAACCCCATTCGCGAAAGCGTAATATCCGTTGTGCCTAAAGGTAT > W3110S.gb/1857615‑1857676
|
ccAATGGCCCATGTCCCCAACCCCATTCGCTAAAGCGTTATATCCGTTGTGCCTAAAGGTAt < 1:1101799/62‑1 (MQ=255)
ccAATGGCCCATGTCCCCAACCCCATTCGCGAAAGCGTTATATCCGTTGTGCCTAAAGGTAt < 1:377852/62‑1 (MQ=255)
ccAATGGCCCATGTCCCCAACCCCATTCGCGAAAGCGTTATATCCGTTGTGCCTAAAGGTAt < 1:58042/62‑1 (MQ=255)
ccAATGGCCCATGTCCCCAACCCCATTCGCGAAAGCGTTATATCCGTTGTGCCTAAAGGTAt < 1:549070/62‑1 (MQ=255)
ccAATGGCCCATGTCCCCAACCCCATTCGCGAAAGCGTTATATCCGTTGTGCCTAAAGGTAt < 1:544320/62‑1 (MQ=255)
ccAATGGCCCATGTCCCCAACCCCATTCGCGAAAGCGTTATATCCGTTGTGCCTAAAGGTAt < 1:533918/62‑1 (MQ=255)
ccAATGGCCCATGTCCCCAACCCCATTCGCGAAAGCGTTATATCCGTTGTGCCTAAAGGTAt < 1:484909/62‑1 (MQ=255)
ccAATGGCCCATGTCCCCAACCCCATTCGCGAAAGCGTTATATCCGTTGTGCCTAAAGGTAt < 1:468725/62‑1 (MQ=255)
ccAATGGCCCATGTCCCCAACCCCATTCGCGAAAGCGTTATATCCGTTGTGCCTAAAGGTAt < 1:414014/62‑1 (MQ=255)
ccAATGGCCCATGTCCCCAACCCCATTCGCGAAAGCGTTATATCCGTTGTGCCTAAAGGTAt < 1:40371/62‑1 (MQ=255)
ccAATGGCCCATGTCCCCAACCCCATTCGCGAAAGCGTTATATCCGTTGTGCCTAAAGGTAt < 1:619296/62‑1 (MQ=255)
ccAATGGCCCATGTCCCCAACCCCATTCGCGAAAGCGTTATATCCGTTGTGCCTAAAGGTAt < 1:377263/62‑1 (MQ=255)
ccAATGGCCCATGTCCCCAACCCCATTCGCGAAAGCGTTATATCCGTTGTGCCTAAAGGTAt < 1:377217/62‑1 (MQ=255)
ccAATGGCCCATGTCCCCAACCCCATTCGCGAAAGCGTTATATCCGTTGTGCCTAAAGGTAt < 1:356026/62‑1 (MQ=255)
ccAATGGCCCATGTCCCCAACCCCATTCGCGAAAGCGTTATATCCGTTGTGCCTAAAGGTAt < 1:338205/62‑1 (MQ=255)
ccAATGGCCCATGTCCCCAACCCCATTCGCGAAAGCGTTATATCCGTTGTGCCTAAAGGTAt < 1:325816/62‑1 (MQ=255)
ccAATGGCCCATGTCCCCAACCCCATTCGCGAAAGCGTTATATCCGTTGTGCCTAAAGGTAt < 1:307504/62‑1 (MQ=255)
ccAATGGCCCATGTCCCCAACCCCATTCGCGAAAGCGTTATATCCGTTGTGCCTAAAGGTAt < 1:1011601/62‑1 (MQ=255)
ccAATGGCCCATGTCCCCAACCCCATTCGCGAAAGCGTTATATCCGTTGTGCCTAAAGGTAt < 1:620661/62‑1 (MQ=255)
ccAATGGCCCATGTCCCCAACCCCATTCGCGAAAGCGTTATATCCGTTGTGCCTAAAGGTAt < 1:652318/62‑1 (MQ=255)
ccAATGGCCCATGTCCCCAACCCCATTCGCGAAAGCGTTATATCCGTTGTGCCTAAAGGTAt < 1:680953/62‑1 (MQ=255)
ccAATGGCCCATGTCCCCAACCCCATTCGCGAAAGCGTTATATCCGTTGTGCCTAAAGGTAt < 1:681016/62‑1 (MQ=255)
ccAATGGCCCATGTCCCCAACCCCATTCGCGAAAGCGTTATATCCGTTGTGCCTAAAGGTAt < 1:695461/62‑1 (MQ=255)
ccAATGGCCCATGTCCCCAACCCCATTCGCGAAAGCGTTATATCCGTTGTGCCTAAAGGTAt < 1:707274/62‑1 (MQ=255)
ccAATGGCCCATGTCCCCAACCCCATTCGCGAAAGCGTTATATCCGTTGTGCCTAAAGGTAt < 1:73697/62‑1 (MQ=255)
ccAATGGCCCATGTCCCCAACCCCATTCGCGAAAGCGTTATATCCGTTGTGCCTAAAGGTAt < 1:784107/62‑1 (MQ=255)
ccAATGGCCCATGTCCCCAACCCCATTCGCGAAAGCGTTATATCCGTTGTGCCTAAAGGTAt < 1:785228/62‑1 (MQ=255)
ccAATGGCCCATGTCCCCAACCCCATTCGCGAAAGCGTTATATCCGTTGTGCCTAAAGGTAt < 1:796876/62‑1 (MQ=255)
ccAATGGCCCATGTCCCCAACCCCATTCGCGAAAGCGTTATATCCGTTGTGCCTAAAGGTAt < 1:912731/62‑1 (MQ=255)
ccAATGGCCCATGTCCCCAACCCCATTCGCGAAAGCGTTATATCCGTTGTGCCTAAAGGTAt < 1:914251/62‑1 (MQ=255)
ccAATGGCCCATGTCCCCAACCCCATTCGCGAAAGCGTTATATCCGTTGTGCCTAAAGGTAt < 1:955579/62‑1 (MQ=255)
ccAATGGCCCATGTCCCCAACCCCATTCGCGAAAGCGTTATATCCGTTGTGCCTAAAGGTAt < 1:984392/62‑1 (MQ=255)
ccAATGGCCCATGTCCCCAACCCCATTCGCGAAAGCGTTATATCCGTTGTGCCTAAAGGTAt < 1:1400033/62‑1 (MQ=255)
ccAATGGCCCATGTCCCCAACCCCATTCGCGAAAGCGTTATATCCGTTGTGCCTAAAGGTAt < 1:1005440/62‑1 (MQ=255)
ccAATGGCCCATGTCCCCAACCCCATTCGCGAAAGCGTTATATCCGTTGTGCCTAAAGGTAt < 1:1098412/62‑1 (MQ=255)
ccAATGGCCCATGTCCCCAACCCCATTCGCGAAAGCGTTATATCCGTTGTGCCTAAAGGTAt < 1:1114707/62‑1 (MQ=255)
ccAATGGCCCATGTCCCCAACCCCATTCGCGAAAGCGTTATATCCGTTGTGCCTAAAGGTAt < 1:1157656/62‑1 (MQ=255)
ccAATGGCCCATGTCCCCAACCCCATTCGCGAAAGCGTTATATCCGTTGTGCCTAAAGGTAt < 1:1176911/62‑1 (MQ=255)
ccAATGGCCCATGTCCCCAACCCCATTCGCGAAAGCGTTATATCCGTTGTGCCTAAAGGTAt < 1:1232720/62‑1 (MQ=255)
ccAATGGCCCATGTCCCCAACCCCATTCGCGAAAGCGTTATATCCGTTGTGCCTAAAGGTAt < 1:1244138/62‑1 (MQ=255)
ccAATGGCCCATGTCCCCAACCCCATTCGCGAAAGCGTTATATCCGTTGTGCCTAAAGGTAt < 1:1257322/62‑1 (MQ=255)
ccAATGGCCCATGTCCCCAACCCCATTCGCGAAAGCGTTATATCCGTTGTGCCTAAAGGTAt < 1:1275016/62‑1 (MQ=255)
ccAATGGCCCATGTCCCCAACCCCATTCGCGAAAGCGTTATATCCGTTGTGCCTAAAGGTAt < 1:1339634/62‑1 (MQ=255)
ccAATGGCCCATGTCCCCAACCCCATTCGCGAAAGCGTTATATCCGTTGTGCCTAAAGGTAt < 1:1341654/62‑1 (MQ=255)
ccAATGGCCCATGTCCCCAACCCCATTCGCGAAAGCGTTATATCCGTTGTGCCTAAAGGTAt < 1:1358876/62‑1 (MQ=255)
ccAATGGCCCATGTCCCCAACCCCATTCGCGAAAGCGTTATATCCGTTGTGCCTAAAGGTAt < 1:1360411/62‑1 (MQ=255)
ccAATGGCCCATGTCCCCAACCCCATTCGCGAAAGCGTTATATCCGTTGTGCCTAAAGGTAt < 1:1363644/62‑1 (MQ=255)
ccAATGGCCCATGTCCCCAACCCCATTCGCGAAAGCGTTATATCCGTTGTGCCTAAAGGTAt < 1:140655/62‑1 (MQ=255)
ccAATGGCCCATGTCCCCAACCCCATTCGCGAAAGCGTTATATCCGTTGTGCCTAAAGGTAt < 1:1434715/62‑1 (MQ=255)
ccAATGGCCCATGTCCCCAACCCCATTCGCGAAAGCGTTATATCCGTTGTGCCTAAAGGTAt < 1:1455136/62‑1 (MQ=255)
ccAATGGCCCATGTCCCCAACCCCATTCGCGAAAGCGTTATATCCGTTGTGCCTAAAGGTAt < 1:1466381/62‑1 (MQ=255)
ccAATGGCCCATGTCCCCAACCCCATTCGCGAAAGCGTTATATCCGTTGTGCCTAAAGGTAt < 1:174104/62‑1 (MQ=255)
ccAATGGCCCATGTCCCCAACCCCATTCGCGAAAGCGTTATATCCGTTGTGCCTAAAGGTAt < 1:209077/62‑1 (MQ=255)
ccAATGGCCCATGTCCCCAACCCCATTCGCGAAAGCGTTATATCCGTTGTGCCTAAAGGTAt < 1:211436/62‑1 (MQ=255)
ccAATGGCCCATGTCCCCAACCCCATTCGCGAAAGCGTTATATCCGTTGTGCCTAAAGGTAt < 1:214253/62‑1 (MQ=255)
ccAATGGCCCATGTCCCCAACCCCATTCGCGAAAGCGTTATATCCGTTGTGCCTAAAGGTAt < 1:216134/62‑1 (MQ=255)
ccAATGGCCCATGTCCCCAACCCCATTCGCGAAAGCGTTATATCCGTTGTGCCTAAAGGTAt < 1:235077/62‑1 (MQ=255)
ccAATGGCCCATGTCCCCAACCCCATTCGCGAAAGCGTTATATCCGTTGTGCCTAAAGGTAt < 1:260000/62‑1 (MQ=255)
ccAATGGCCCATGTCCCCAACCCCATTCGCGAAAGCGTTATATCCGTTGTGCCTAAAGGTAt < 1:275078/62‑1 (MQ=255)
cAATGGCCCATGTCCCCAACCCCATTCGCGAAAGCGTTATATCCGTTGTGCCTAAAGGTAt < 1:279090/61‑1 (MQ=255)
cAATGGCCCATGTCCCCAACCCCATTCGCGAAAGCGTTATATCCGTTGTGCCTAAAGGTAt < 1:709994/61‑1 (MQ=255)
cAATGGCCCATGTCCCCAACCCCATTCGCGAAAGCGTTATATCCGTTGTGCCTAAAGGTAt < 1:232736/61‑1 (MQ=255)
cccATGTCCCCAACCCCATTCGCGAAAGCGTTATATCCGTTGTGCCTAAAGGTAt < 1:1422143/55‑1 (MQ=255)
|
CCAATGGCCCATGTCCCCAACCCCATTCGCGAAAGCGTAATATCCGTTGTGCCTAAAGGTAT > W3110S.gb/1857615‑1857676
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
