Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I2 R1
|
721 |
0.0 |
1472758 |
54.8% |
807071 |
56.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
2,148,022 |
C→A |
L874I (CTC→ATC) |
yegE → |
predicted diguanylate cyclase, GGDEF domain signalling protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 2,148,022 | 0 | C | A | 100.0%
| 288.9
/ NA
| 110 | L874I (CTC→ATC) | yegE | predicted diguanylate cyclase, GGDEF domain signalling protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (110/0); total (110/0) |
Only 100 of 110 total aligned reads displayed.
AATCAGTTGATGATGCTCGCCCACGGTGTCGCTTCGCCACGGATCCC > W3110S.gb/2148007‑2148053
|
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:432580/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:601561/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:593047/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:580346/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:577035/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:575646/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:553955/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:539439/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:537954/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:535209/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:500561/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:490775/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:448685/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:624983/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:356867/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:334616/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:334232/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:33060/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:298672/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:286521/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:279403/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:267939/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:264080/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:1004340/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:22389/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:813771/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:964131/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:954498/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:9474/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:939707/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:909646/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:905581/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:898263/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:894858/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:890597/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:876337/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:831207/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:249189/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:813030/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:797226/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:765968/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:760451/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:759376/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:740208/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:730392/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:692154/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:650559/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:632416/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:631343/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:1167314/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:1314834/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:201324/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:1298676/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:1297996/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:1265799/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:1254889/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:1239605/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:1230372/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:1195932/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:1194675/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:1173514/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:1313775/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:1159872/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:1155670/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:1117668/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:1081671/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:1074734/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:1069352/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:1068918/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:1039156/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:1031862/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:102165/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:1009667/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:1395022/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:172710/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:172703/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:163258/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:1463381/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:1456802/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:1455737/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:1450685/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:1414/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:1399643/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:13995/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:1398044/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:1335099/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:1392538/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:1374033/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:1373977/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:136868/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:1355361/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:1353413/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:1338609/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggct > 1:1336394/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggc > 1:772921/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggc > 1:1093483/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACggc > 1:1291293/1‑42 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACg > 1:440082/1‑41 (MQ=25)
aaTCAGTTGATGATGATCGCCCACGGCATCGCTTCGCCACGGCTccc > 1:562710/1‑47 (MQ=25)
aaTCAGTTGATGATGATCGCCCACCGCATCGCTTCGCCACggc > 1:1262810/1‑42 (MQ=21)
|
AATCAGTTGATGATGCTCGCCCACGGTGTCGCTTCGCCACGGATCCC > W3110S.gb/2148007‑2148053
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
