Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I1 R1
|
826 |
0.0 |
88706 |
74.7% |
66263 |
57.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
796,542 |
A→T |
T87S (ACC→TCT) |
modB → |
molybdate transporter subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 796,542 | 0 | A | T | 100.0%
| 33.2
/ NA
| 21 | T87S (ACC→TCT) | modB | molybdate transporter subunit |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base T (0/21); total (0/21) |
CGTCTGTATGACTGGTTTGGTATTACCTTCGCCTTTAGCTGGCGCGGCGCGGTTCTCGCTGC > W3110S.gb/796518‑796579
|
cGTCTGTATGACTGGTTTGGTCTTTCTTTCGCGTTTAGCTGGCGTGGTGCGGTTCTCGCTgc < 1:11281/62‑1 (MQ=255)
cGTCTGTATGACTGGTTTGGTCTTTCTTTCGCGTTTAGCTGGCGTGGTGCGGTTCTCGCTgc < 1:9351/62‑1 (MQ=255)
cGTCTGTATGACTGGTTTGGTCTTTCTTTCGCGTTTAGCTGGCGTGGTGCGGTTCTCGCTgc < 1:84861/62‑1 (MQ=255)
cGTCTGTATGACTGGTTTGGTCTTTCTTTCGCGTTTAGCTGGCGTGGTGCGGTTCTCGCTgc < 1:68745/62‑1 (MQ=255)
cGTCTGTATGACTGGTTTGGTCTTTCTTTCGCGTTTAGCTGGCGTGGTGCGGTTCTCGCTgc < 1:65675/62‑1 (MQ=255)
cGTCTGTATGACTGGTTTGGTCTTTCTTTCGCGTTTAGCTGGCGTGGTGCGGTTCTCGCTgc < 1:63723/62‑1 (MQ=255)
cGTCTGTATGACTGGTTTGGTCTTTCTTTCGCGTTTAGCTGGCGTGGTGCGGTTCTCGCTgc < 1:57811/62‑1 (MQ=255)
cGTCTGTATGACTGGTTTGGTCTTTCTTTCGCGTTTAGCTGGCGTGGTGCGGTTCTCGCTgc < 1:4539/62‑1 (MQ=255)
cGTCTGTATGACTGGTTTGGTCTTTCTTTCGCGTTTAGCTGGCGTGGTGCGGTTCTCGCTgc < 1:45327/62‑1 (MQ=255)
cGTCTGTATGACTGGTTTGGTCTTTCTTTCGCGTTTAGCTGGCGTGGTGCGGTTCTCGCTgc < 1:37831/62‑1 (MQ=255)
cGTCTGTATGACTGGTTTGGTCTTTCTTTCGCGTTTAGCTGGCGTGGTGCGGTTCTCGCTgc < 1:35694/62‑1 (MQ=255)
cGTCTGTATGACTGGTTTGGTCTTTCTTTCGCGTTTAGCTGGCGTGGTGCGGTTCTCGCTgc < 1:26551/62‑1 (MQ=255)
cGTCTGTATGACTGGTTTGGTCTTTCTTTCGCGTTTAGCTGGCGTGGTGCGGTTCTCGCTgc < 1:26357/62‑1 (MQ=255)
cGTCTGTATGACTGGTTTGGTCTTTCTTTCGCGTTTAGCTGGCGTGGTGCGGTTCTCGCTgc < 1:18803/62‑1 (MQ=255)
cGTCTGTATGACTGGTTTGGTCTTTCTTTCGCGTTTAGCTGGCGTGGTGCGGTTCTCGCTgc < 1:17493/62‑1 (MQ=255)
cGTCTGTATGACTGGTTTGGTCTTTCTTTCGCGTTTAGCTGGCGTGGTGCGGTTCTCGCTgc < 1:13727/62‑1 (MQ=255)
cGTCTGTATGACTGGTTTGGTCTTTCTTTCGCGTTTAGCTGGCGTGGTGCGGTTCTCGCTgc < 1:12572/62‑1 (MQ=255)
cGTCTGTATGACTGGTTTGGTCTTTCTTTCGCGTTTAGCTGGCGTGGTGCGGTTCTCGCTgc < 1:10567/62‑1 (MQ=255)
cGTCTGTATGACTGGTTTGGTCTTTCTTTCGCGTTTAGCTGGCGTGGTGCGGTTCTAGCTgc < 1:758/62‑1 (MQ=255)
gTCTGTATGACTGGTTTGGTCTTTCTTTCGCGTTTAGCTGGCGTGGTGCGGTTCTCGCTgc < 1:37790/61‑1 (MQ=255)
gTCTGTATGACTGGTTTGGTCTTTCTTTCGCGTTTAGCTGGCGTGGTGCGGTTCTCGCTgc < 1:23226/61‑1 (MQ=255)
|
CGTCTGTATGACTGGTTTGGTATTACCTTCGCCTTTAGCTGGCGCGGCGCGGTTCTCGCTGC > W3110S.gb/796518‑796579
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
