Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I1 R1
|
826 |
0.0 |
88706 |
74.7% |
66263 |
57.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
2,207,152 |
A→G |
R1180R (CGA→CGG) |
yehI → |
conserved hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 2,207,152 | 0 | A | G | 100.0%
| 65.8
/ NA
| 37 | R1180R (CGA→CGG) | yehI | conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (37/0); total (37/0) |
GCTTCCGTTCTCTTCGAGTGTACCGTGACAATAAATCCGTCACTTTTGCCG > W3110S.gb/2207136‑2207186
|
gCTTCCGTTCTCTTTGGGTTTACCGTGACAATAAATCCGTCACTTTTGCCg > 1:39953/1‑51 (MQ=255)
gCTTCCGTTCTCTTCGGGTTTACCGTGACAATAAATGCGTCACTTTTGCCg > 1:80387/1‑51 (MQ=255)
gCTTCCGTTCTCTTCGGGTTTACCGTGACAATAAATCCGTCACTTTTGc > 1:40498/1‑49 (MQ=39)
gCTTCCGTTCTCTTCGGGTTTACCGTGACAATAAATCCGTCACTTTTGCCg > 1:74578/1‑51 (MQ=255)
gCTTCCGTTCTCTTCGGGTTTACCGTGACAATAAATCCGTCACTTTTGCCg > 1:57271/1‑51 (MQ=255)
gCTTCCGTTCTCTTCGGGTTTACCGTGACAATAAATCCGTCACTTTTGCCg > 1:60583/1‑51 (MQ=255)
gCTTCCGTTCTCTTCGGGTTTACCGTGACAATAAATCCGTCACTTTTGCCg > 1:60848/1‑51 (MQ=255)
gCTTCCGTTCTCTTCGGGTTTACCGTGACAATAAATCCGTCACTTTTGCCg > 1:61799/1‑51 (MQ=255)
gCTTCCGTTCTCTTCGGGTTTACCGTGACAATAAATCCGTCACTTTTGCCg > 1:65023/1‑51 (MQ=255)
gCTTCCGTTCTCTTCGGGTTTACCGTGACAATAAATCCGTCACTTTTGCCg > 1:65160/1‑51 (MQ=255)
gCTTCCGTTCTCTTCGGGTTTACCGTGACAATAAATCCGTCACTTTTGCCg > 1:67981/1‑51 (MQ=255)
gCTTCCGTTCTCTTCGGGTTTACCGTGACAATAAATCCGTCACTTTTGCCg > 1:52518/1‑51 (MQ=255)
gCTTCCGTTCTCTTCGGGTTTACCGTGACAATAAATCCGTCACTTTTGCCg > 1:76911/1‑51 (MQ=255)
gCTTCCGTTCTCTTCGGGTTTACCGTGACAATAAATCCGTCACTTTTGCCg > 1:77536/1‑51 (MQ=255)
gCTTCCGTTCTCTTCGGGTTTACCGTGACAATAAATCCGTCACTTTTGCCg > 1:82639/1‑51 (MQ=255)
gCTTCCGTTCTCTTCGGGTTTACCGTGACAATAAATCCGTCACTTTTGCCg > 1:83442/1‑51 (MQ=255)
gCTTCCGTTCTCTTCGGGTTTACCGTGACAATAAATCCGTCACTTTTGCCg > 1:85727/1‑51 (MQ=255)
gCTTCCGTTCTCTTCGGGTTTACCGTGACAATAAATCCGTCACTTTTGCCg > 1:86813/1‑51 (MQ=255)
gCTTCCGTTCTCTTCGGGTTTACCGTGACAATAAATCCGTCACTTTTGCCg > 1:88298/1‑51 (MQ=255)
gCTTCCGTTCTCTTCGGGTTTACCGTGACAATAAATCCGTCACTTTTGCCg > 1:30933/1‑51 (MQ=255)
gCTTCCGTTCTCTTCGGGTTTACCGTGACAATAAATCCGTCACTTTTGCCg > 1:16763/1‑51 (MQ=255)
gCTTCCGTTCTCTTCGGGTTTACCGTGACAATAAATCCGTCACTTTTGCCg > 1:21506/1‑51 (MQ=255)
gCTTCCGTTCTCTTCGGGTTTACCGTGACAATAAATCCGTCACTTTTGCCg > 1:21959/1‑51 (MQ=255)
gCTTCCGTTCTCTTCGGGTTTACCGTGACAATAAATCCGTCACTTTTGCCg > 1:25037/1‑51 (MQ=255)
gCTTCCGTTCTCTTCGGGTTTACCGTGACAATAAATCCGTCACTTTTGCCg > 1:25264/1‑51 (MQ=255)
gCTTCCGTTCTCTTCGGGTTTACCGTGACAATAAATCCGTCACTTTTGCCg > 1:25887/1‑51 (MQ=255)
gCTTCCGTTCTCTTCGGGTTTACCGTGACAATAAATCCGTCACTTTTGCCg > 1:29065/1‑51 (MQ=255)
gCTTCCGTTCTCTTCGGGTTTACCGTGACAATAAATCCGTCACTTTTGCCg > 1:29895/1‑51 (MQ=255)
gCTTCCGTTCTCTTCGGGTTTACCGTGACAATAAATCCGTCACTTTTGCCg > 1:56986/1‑51 (MQ=255)
gCTTCCGTTCTCTTCGGGTTTACCGTGACAATAAATCCGTCACTTTTGCCg > 1:34478/1‑51 (MQ=255)
gCTTCCGTTCTCTTCGGGTTTACCGTGACAATAAATCCGTCACTTTTGCCg > 1:34737/1‑51 (MQ=255)
gCTTCCGTTCTCTTCGGGTTTACCGTGACAATAAATCCGTCACTTTTGCCg > 1:34748/1‑51 (MQ=255)
gCTTCCGTTCTCTTCGGGTTTACCGTGACAATAAATCCGTCACTTTTGCCg > 1:37670/1‑51 (MQ=255)
gCTTCCGTTCTCTTCGGGTTTACCGTGACAATAAATCCGTCACTTTTGCCg > 1:38191/1‑51 (MQ=255)
gCTTCCGTTCTCTTCGGGTTTACCGTGACAATAAATCCGTCACTTTTGCCg > 1:46946/1‑51 (MQ=255)
gCTTCCGTTCTCTTCGGGTTTACCGTGACAATAAATCCGTCACTTTTGCCg > 1:16199/1‑51 (MQ=255)
gCTTCCGTTCTCTTCGGGTTTACCGTAACAATAAATCCGTCACTTTTGCCg > 1:67189/1‑51 (MQ=255)
|
GCTTCCGTTCTCTTCGAGTGTACCGTGACAATAAATCCGTCACTTTTGCCG > W3110S.gb/2207136‑2207186
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
