Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I3 R1
|
375 |
42.1 |
2927644 |
71.4% |
2090337 |
57.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
1,871,237 |
C→T |
A190V (GCA→GTA) |
yeaH → |
conserved hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 1,871,237 | 0 | C | T | 100.0%
| 184.5
/ NA
| 56 | A190V (GCA→GTA) | yeaH | conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (8/48); total (8/48) |
ACAGCCATGACGGCAGGCAAGCGGCGGGAACTTCATGCACTGGAAGAGAATTTGGCCATCATCAGCAACAGTGAACCTGCGCAACTGCTGGAAG > W3110S.gb/1871200‑1871293
|
acaGCCATGACGGCAGGCAAGCGGCGGGAACTTCATGTACTGGAAGAGAATTTGGCcatc > 1:1301616/1‑60 (MQ=255)
acaGCCATGACGGCAGGCAAGCGGCGGGAACTTCATGTACTGGAAGAGAATTTGGCcatc > 1:1321544/1‑60 (MQ=255)
cGGCAGGCAAGCGGCGGGAACTTCATGTACTGGAAGAGAATTTGGCCATCATCAGCAACa > 1:2436920/1‑60 (MQ=255)
cGGCAGGCAAGCGGCGGGAACTTCATGTACTGGAAGAGAATTTGGCCATCATCAGCAACa > 1:2151427/1‑60 (MQ=255)
cGGCAGGCAAGCGGCGGGAACTTCATGTACTGGAAGAGAATTTGGCCATCATCAGCAACAg > 1:143298/1‑61 (MQ=255)
cGGCAGGCAAGCGGCGGGAACTTCATGTACTGGAAGAGAATTTGGCCATCATCAGCAACAg > 1:1510295/1‑61 (MQ=255)
cGGCAGGCAAGCGGCGGGAACTTCATGTACTGGAAGAGAATTTGGCCATCATCAGCAACAg > 1:778603/1‑61 (MQ=255)
cGGCAGGCAAGCGGCGGGAACTTCATGTACTGGAAGAGAATTTGGCCATCATCAGCAACAg > 1:1908180/1‑61 (MQ=255)
aaCTTCATGTACTGGAAGAGAATTTGGCCATCATCAGCAACAGTGAACCTGCGCAActgctg < 1:2673257/62‑1 (MQ=255)
aaCTTCATGTACTGGAAGAGAATTTGGCCATCATCAGCAACAGTGAACCTGCGCAActgctg < 1:2302560/62‑1 (MQ=255)
aaCTTCATGTACTGGAAGAGAATTTGGCCATCATCAGCAACAGTGAACCTGCGCAActgctg < 1:2875480/62‑1 (MQ=255)
aaCTTCATGTACTGGAAGAGAATTTGGCCATCATCAGCAACAGTGAACCTGCGCAActgctg < 1:751767/62‑1 (MQ=255)
aaCTTCATGTACTGGAAGAGAATTTGGCCATCATCAGCAACAGTGAACCTGCGCAActgctg < 1:1722526/62‑1 (MQ=255)
aaCTTCATGTACTGGAAGAGAATTTGGCCATCATCAGCAACAGTGAACCTGCGCAActgctg < 1:1661800/62‑1 (MQ=255)
aCTTCATGTACTGGAAGAGAATTTGGCCATCATCAGCAACAGTGAACCTGCGCAActgctg < 1:2626192/61‑1 (MQ=255)
tCATGTACTGGAAGAGAATTTGGCCATCATCAGCAACAGTGAACCTTCGCAACTGCTGGAag < 1:1762551/62‑1 (MQ=255)
tCATGTACTGGAAGAGAATTTGGCCATCATCAGCAACAGTGAACCTGCGCAACTGCTGGAag < 1:522756/62‑1 (MQ=255)
tCATGTACTGGAAGAGAATTTGGCCATCATCAGCAACAGTGAACCTGCGCAACTGCTGGAag < 1:2733557/62‑1 (MQ=255)
tCATGTACTGGAAGAGAATTTGGCCATCATCAGCAACAGTGAACCTGCGCAACTGCTGGAag < 1:2628381/62‑1 (MQ=255)
tCATGTACTGGAAGAGAATTTGGCCATCATCAGCAACAGTGAACCTGCGCAACTGCTGGAag < 1:2807768/62‑1 (MQ=255)
tCATGTACTGGAAGAGAATTTGGCCATCATCAGCAACAGTGAACCTGCGCAACTGCTGGAag < 1:2840595/62‑1 (MQ=255)
tCATGTACTGGAAGAGAATTTGGCCATCATCAGCAACAGTGAACCTGCGCAACTGCTGGAag < 1:2600497/62‑1 (MQ=255)
tCATGTACTGGAAGAGAATTTGGCCATCATCAGCAACAGTGAACCTGCGCAACTGCTGGAag < 1:310136/62‑1 (MQ=255)
tCATGTACTGGAAGAGAATTTGGCCATCATCAGCAACAGTGAACCTGCGCAACTGCTGGAag < 1:335778/62‑1 (MQ=255)
tCATGTACTGGAAGAGAATTTGGCCATCATCAGCAACAGTGAACCTGCGCAACTGCTGGAag < 1:422873/62‑1 (MQ=255)
tCATGTACTGGAAGAGAATTTGGCCATCATCAGCAACAGTGAACCTGCGCAACTGCTGGAag < 1:507005/62‑1 (MQ=255)
tCATGTACTGGAAGAGAATTTGGCCATCATCAGCAACAGTGAACCTGCGCAACTGCTGGAag < 1:517585/62‑1 (MQ=255)
tCATGTACTGGAAGAGAATTTGGCCATCATCAGCAACAGTGAACCTGCGCAACTGCTGGAag < 1:2401298/62‑1 (MQ=255)
tCATGTACTGGAAGAGAATTTGGCCATCATCAGCAACAGTGAACCTGCGCAACTGCTGGAag < 1:85320/62‑1 (MQ=255)
tCATGTACTGGAAGAGAATTTGGCCATCATCAGCAACAGTGAACCTGCGCAACTGCTGGAag < 1:862713/62‑1 (MQ=255)
tCATGTACTGGAAGAGAATTTGGCCATCATCAGCAACAGTGAACCTGCGCAACTGCTGGAag < 1:869909/62‑1 (MQ=255)
tCATGTACTGGAAGAGAATTTGGCCATCATCAGCAACAGTGAACCTGCGCAACTGCTGGAag < 1:909326/62‑1 (MQ=255)
tCATGTACTGGAAGAGAATTTGGCCATCATCAGCAACAGTGAACCTGCGCAACTGCTGGAag < 1:916955/62‑1 (MQ=255)
tCATGTACTGGAAGAGAATTTGGCCATCATCAGCAACAGTGAACCTGCGCAACTGCTGGAag < 1:2222743/62‑1 (MQ=255)
tCATGTACTGGAAGAGAATTTGGCCATCATCAGCAACAGTGAACCTGCGCAACTGCTGGAag < 1:1138295/62‑1 (MQ=255)
tCATGTACTGGAAGAGAATTTGGCCATCATCAGCAACAGTGAACCTGCGCAACTGCTGGAag < 1:1236078/62‑1 (MQ=255)
tCATGTACTGGAAGAGAATTTGGCCATCATCAGCAACAGTGAACCTGCGCAACTGCTGGAag < 1:1354701/62‑1 (MQ=255)
tCATGTACTGGAAGAGAATTTGGCCATCATCAGCAACAGTGAACCTGCGCAACTGCTGGAag < 1:1460880/62‑1 (MQ=255)
tCATGTACTGGAAGAGAATTTGGCCATCATCAGCAACAGTGAACCTGCGCAACTGCTGGAag < 1:1723807/62‑1 (MQ=255)
tCATGTACTGGAAGAGAATTTGGCCATCATCAGCAACAGTGAACCTGCGCAACTGCTGGAag < 1:1958871/62‑1 (MQ=255)
tCATGTACTGGAAGAGAATTTGGCCATCATCAGCAACAGTGAACCTGCGCAACTGCTGGAag < 1:197982/62‑1 (MQ=255)
tCATGTACTGGAAGAGAATTTGGCCATCATCAGCAACAGTGAACCTGCGCAACTGCTGGAag < 1:2012906/62‑1 (MQ=255)
tCATGTACTGGAAGAGAATTTGGCCATCATCAGCAACAGTGAACCTGCGCAACTGCTGGAag < 1:2219094/62‑1 (MQ=255)
tCATGTACTGGAAGAGAATTTGGCCATCATCAGCAACAGTGAACCTGCGCAACTGCTGGAag < 1:2219463/62‑1 (MQ=255)
tCATGTACTGGAAGAGAATTTGGCCATCATCAGCAACAGTGAACCTGCGCAACTGCTGGAag < 1:2563678/62‑1 (MQ=255)
tCATGTACTGGAAGAGAATTTGGCCATCATCAGCAACAGTGAACCTGCGCAACTGCTGGAag < 1:2236978/62‑1 (MQ=255)
tCATGTACTGGAAGAGAATTTGGCCATCATCAGCAACAGTGAACCTGCGCAACTGCTGGAag < 1:2239286/62‑1 (MQ=255)
tCATGTACTGGAAGAGAATTTGGCCATCATCAGCAACAGTGAACCTGCGCAACTGCTGGAag < 1:2342769/62‑1 (MQ=255)
tCATGTACTGGAAGAGAATTTGGCCATCATCAGCAACAGTGAACCTGCGCAACTGCTGGAag < 1:2353416/62‑1 (MQ=255)
tCATGTACTGGAAGAGAATTTGGCCATCATCAGCAACAGTGAACCTGCGCAACTGCTGGAag < 1:2372201/62‑1 (MQ=255)
tCATGTACTGGAAGAGAATTTGGCCATCATCAGCAACAGTGAACCTGCGCAACTGCTGGAag < 1:2383379/62‑1 (MQ=255)
tCATGTACTGGAAGAGAATTTGGCCATCATCAGCAACAGTGAACCTGCGCAACTGCTGGAag < 1:1081819/62‑1 (MQ=255)
tCATGTACTGGAAGAGAATTTGGCCATCATCAGCAACAGTGAACCTGCGCAACTGCTGGAag < 1:2408630/62‑1 (MQ=255)
tCATGTACTGGAAGAGAATTTGGCCATCATCAGCAACAGTGAACCTGCGCAACTGCTGGAag < 1:2431358/62‑1 (MQ=255)
tCATGTACTGGAAGAGAATTTGGCCATCATCAGCAACAGTGAACCTGCGCAACTGCTGGAag < 1:2542272/62‑1 (MQ=255)
tCATGTAATGGAAGAGAATTTGGCCATCATCAGCAACAGTGAACCTGCGCAACTGCTGGAag < 1:699603/62‑1 (MQ=255)
|
ACAGCCATGACGGCAGGCAAGCGGCGGGAACTTCATGCACTGGAAGAGAATTTGGCCATCATCAGCAACAGTGAACCTGCGCAACTGCTGGAAG > W3110S.gb/1871200‑1871293
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
