Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F21 I0 R1
|
1009 |
73.8 |
4146436 |
87.4% |
3623985 |
60.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
2,595,306 |
C→A |
20.7% |
intergenic (‑11/+2) |
arsC ← / ← arsB |
arsenate reductase/arsenite/antimonite transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,595,306 | 0 | C | A | 20.7%
| 216.6
/ 27.5
| 77 | intergenic (‑11/+2) | arsC/arsB | arsenate reductase/arsenite/antimonite transporter |
| Reads supporting (aligned to +/- strand): ref base C (32/29); new base A (10/6); total (42/35) |
| Fisher's exact test for biased strand distribution p-value = 5.77e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.87e-01 |
TCCAGCGTATTACGCGACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAGCACAGGCAGGGTCATGA > minE/2595237‑2595375
|
tcCAGCGTATTACGCGACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCa > 1:3187360/1‑71 (MQ=255)
cAGCGTATTACGCGACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCAt > 1:213189/1‑70 (MQ=255)
cGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACa < 1:2099097/71‑1 (MQ=255)
gTATTACGCGACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACa > 1:1597207/1‑70 (MQ=255)
tATTACGCGACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACa > 1:2672352/1‑69 (MQ=255)
aCGCGACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACaa > 1:2202706/1‑66 (MQ=255)
aCGCGACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTg > 1:1639357/1‑70 (MQ=255)
aCGCGACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTg < 1:2030771/70‑1 (MQ=255)
cgcgACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGaa < 1:2384280/71‑1 (MQ=255)
cgcgACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGaa < 1:2880073/71‑1 (MQ=255)
cgcgACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGa < 1:2113878/70‑1 (MQ=255)
cgcgACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGa < 1:2634848/70‑1 (MQ=255)
gcgACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGaaa < 1:2336324/71‑1 (MQ=255)
cgACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGa > 1:745275/1‑68 (MQ=255)
gACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAaga < 1:77634/71‑1 (MQ=255)
gACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAaga < 1:885400/71‑1 (MQ=255)
aCGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAagag < 1:3456575/71‑1 (MQ=255)
aCGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAagag < 1:3804033/71‑1 (MQ=255)
tGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAaga < 1:427661/67‑1 (MQ=255)
ccGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAagaga > 1:3346957/1‑67 (MQ=255)
ccGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAagaga < 1:3826643/67‑1 (MQ=255)
ccGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACg < 1:2828871/71‑1 (MQ=255)
cGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAag > 1:1790879/1‑63 (MQ=255)
cGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAag > 1:2236511/1‑63 (MQ=255)
cAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACagagagc > 1:1754559/1‑65 (MQ=255)
cAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGaaa > 1:1723584/1‑60 (MQ=255)
cAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGaaa > 1:2392040/1‑60 (MQ=255)
ccGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGcc < 1:1336311/71‑1 (MQ=255)
cGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAgcgc > 1:3884315/1‑69 (MQ=255)
tgtgATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAag > 1:1906276/1‑51 (MQ=255)
tgtgATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAAgagaga < 1:1168801/56‑1 (MQ=255)
tgATAAATGGTAATGTTGCTCATATCAGTATCTCATTACa < 1:3507236/40‑1 (MQ=255)
tgATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGcc < 1:2358810/63‑1 (MQ=255)
tgATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGcag < 1:1479919/70‑1 (MQ=255)
gATAAATGGTAATGTTGCTCATATCAGTATCTCATTACaa > 1:829721/1‑40 (MQ=255)
aTAGATGGTAATGTTGCTCATATCAGTATCTAATTACaaa > 1:3230023/1‑40 (MQ=38)
aTAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCa > 1:3451772/1‑62 (MQ=255)
aTAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGcagc > 1:31842/1‑69 (MQ=255)
tAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGa < 1:135342/43‑1 (MQ=255)
agaTGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGcggcca > 1:1307160/3‑69 (MQ=255)
gaTGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGcggccagag > 1:417408/2‑69 (MQ=255)
aaTGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCg > 1:1405204/1‑71 (MQ=255)
aaTGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCg > 1:2351324/1‑71 (MQ=255)
aaTGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCg < 1:3550584/71‑1 (MQ=255)
ggTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTca > 1:4039555/1‑71 (MQ=255)
ggTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTca > 1:4030391/1‑71 (MQ=255)
gTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAgcgc < 1:831615/59‑1 (MQ=255)
tAATGTTGCTCATATCAGTATCTAATTACAAAGTGACaga > 1:3896011/1‑40 (MQ=38)
tAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCGGCCAGAGTgaca < 1:873995/71‑1 (MQ=255)
tAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCGGCCAGAGTgaca < 1:1124709/71‑1 (MQ=255)
aaTGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAg > 1:1842547/1‑48 (MQ=255)
aTGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGt < 1:607554/45‑1 (MQ=255)
tGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGCGACGTAGCGCCAGCGCAGCCAGCGTCACAAAc < 1:666367/71‑1 (MQ=255)
tGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAgcgc < 1:786112/49‑1 (MQ=255)
tGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCCGCGCGGCCAGAGt < 1:4037393/64‑1 (MQ=255)
gTTGCTCATATCAGTATCTCATTACAAAGTGAAagaga > 1:1130018/1‑38 (MQ=255)
gTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACaaa > 1:1021749/1‑69 (MQ=255)
ttGCTCATATCAGTATCTCATTACAAAGTGAAagaga > 1:2393771/1‑37 (MQ=255)
ttGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAg < 1:2015386/71‑1 (MQ=255)
ttGCTCATATCAGTATCTAATTACAAAGTGACaga > 1:836820/1‑35 (MQ=37)
ttGCTCATATCAGTATCTAATTACAAAGTGACaga > 1:2224310/1‑35 (MQ=37)
ttGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCgc > 1:2944192/1‑41 (MQ=37)
ttGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCGGCCAGAGTGACaaa > 1:2576625/1‑68 (MQ=255)
ttGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCGGCCAGAGTGACAAACa < 1:3694442/70‑1 (MQ=255)
ttGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCGGCCAGAGTGACAAACAg > 1:2906983/1‑71 (MQ=255)
atatCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAGCAcagg > 1:3357550/1‑71 (MQ=255)
tatCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAGCAcaggc < 1:3069705/71‑1 (MQ=255)
tatCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAGCAcagg > 1:2013140/1‑70 (MQ=255)
tCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAGCAcaggcag > 1:2561007/1‑71 (MQ=255)
tCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAGCAcaggcag > 1:1528910/1‑71 (MQ=255)
tCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAGCAcaggcag > 1:1521584/1‑71 (MQ=255)
tCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAGCAcaggcag < 1:1319623/71‑1 (MQ=255)
aGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTc > 1:3974419/1‑52 (MQ=255)
gTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGcagccagc < 1:2570829/48‑1 (MQ=255)
tATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAGCACAGGCAGGGTc < 1:3517368/71‑1 (MQ=255)
tATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAGCACAGGCAGGGTc < 1:1207333/71‑1 (MQ=255)
aTCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAGCACAGGCAGGGTCa > 1:1475760/1‑71 (MQ=255)
tctcATTACAAAGTGAAAGAGAGACGTAGCGCCAGcaca < 1:21487/39‑1 (MQ=255)
tctcATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGcagc > 1:4059495/1‑41 (MQ=255)
tctcATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGca < 1:3236470/39‑1 (MQ=255)
tctcATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGt < 1:289700/47‑1 (MQ=255)
tctcATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGt < 1:3392721/47‑1 (MQ=255)
tctcATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTcaca < 1:2182550/51‑1 (MQ=255)
tctcATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTcaca < 1:94865/51‑1 (MQ=255)
tctcATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTc > 1:961741/1‑48 (MQ=255)
tctcATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAGCACAGGCAGGGTCAt > 1:2220851/1‑71 (MQ=255)
tctcATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAGCACAGGCAGGGTCAt > 1:1229331/1‑71 (MQ=255)
tctaATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCGGCCAGAGTGACAAACAGCACCGGCACAGTCAt > 1:1143955/1‑71 (MQ=255)
ctcATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACaaa > 1:581078/1‑52 (MQ=255)
tcATTACATAGTGAAAGAGATACGTAGCGCCAGCGCAGCCAGCGTcaca < 1:1696701/49‑1 (MQ=38)
tcATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTcaca < 1:1323027/49‑1 (MQ=255)
tcATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTcaca < 1:1005448/49‑1 (MQ=255)
tcATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTcaca < 1:1005006/49‑1 (MQ=255)
tcATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAGCACAGGCAGGGTCATGa > 1:1610239/1‑71 (MQ=255)
tcATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAGCACAGGCAGGGTCATGa > 1:87160/1‑71 (MQ=255)
cATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAGCACAGGCAggg > 1:3077170/1‑64 (MQ=255)
cATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAGCACAGGCAGGGTCATg > 1:3475973/1‑69 (MQ=255)
cATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAGCACAGGCAGGGTCATg > 1:3463881/1‑69 (MQ=255)
|
TCCAGCGTATTACGCGACGTGCCGCAGGCCGGGTTGTGATAAATGGTAATGTTGCTCATATCAGTATCTCATTACAAAGTGAAAGAGAGACGTAGCGCCAGCGCAGCCAGCGTCACAAACAGCACAGGCAGGGTCATGA > minE/2595237‑2595375
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
