Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A3 F21 I0 R2	59	23.3	1840861	94.3%	1735931	61.7

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	W3110S.gb	2,286,501	C→A	60.0%	A261S (GCG→TCG)	yejK ←	nucleotide associated protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	W3110S.gb	2,286,501	0	C	A	60.0%	‑5.5 / 27.0	20	A261S (GCG→TCG)	yejK	nucleotide associated protein
Reads supporting (aligned to +/- strand): ref base C (4/4); new base A (3/9); total (7/13)
Fisher's exact test for biased strand distribution p-value = 3.56e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.36e-01

TGCTACGGTCTGCCGGGAAGCTCTCTTCCAGTTCGTAGCCTTTTTCAGCCGCAAACTCCGTGAAGCTCACTTCGCTTACGCCTGCCAGCTCTTTCGACAGCGATTTC  >  W3110S.gb/2286450‑2286556

tgCTACGGTCTGCCGGGAAGCTCTCTTCCAGTTCGTAGCCTTTTTCAGCCGCAAACTCCGTGAAGCTCACt                                      >  1:203280/1‑71 (MQ=255)

tgCTACGGTCTGCCGGGAAGCTCTCTTCCAGTTCGTAGCCTTTTTCAGCCGCAAACTCCGTGAAGCTCACt                                      >  1:1657917/1‑71 (MQ=255)

tgCTACGGTCTGCCGGGAAGCTCTCTTCCAGTTCGTAGCCTTTTTCAGCCGCAAACTCCGTGAAGCTCACt                                      >  1:1520722/1‑71 (MQ=255)

tgCTACGGTCTGCCGGGAAGCTCTCTTCCAGTTCGTAGCCTTTTTCAGCCGCAAACTCCGTGAAGCTCACt                                      >  1:1355261/1‑71 (MQ=255)

       gTCTGCCGGGTAGCTCTCTTCCAGTTCGTAGCCTTTTTCAGCCGCAAACTCCGTGAAGCTCACTTCGCt                                 <  1:262545/69‑1 (MQ=255)

       gTCTGCCGGGAAGCTCTCTTCCAGTTCGTAGCCTTTTTCAGCCGCAAACTCCGTGAAGCTCACTTCGCt                                 <  1:1361286/69‑1 (MQ=255)

                         ttCCAGTTCGTAGCCTTTTTCAGCCGAAAACTCCGTGAAGCTCACTTc                                    <  1:1059183/48‑1 (MQ=255)

                         ttCCAGTTCGTAGCCTTTTTCAGCCGAAAACTCCGTGAAGCTCACTTc                                    <  1:1647575/48‑1 (MQ=255)

                           ccAGTTCGTAGCCTTTTTCAGCCGAAAACTCCGTGAAGCTCACTTctc                                  >  1:987366/1‑46 (MQ=255)

                           ccAGTTCGTAGCCTTTTTCAGCCGAAAACTCCGTGAAGCTCACTTCGc                                  >  1:12022/1‑48 (MQ=255)

                           ccAGTTCGTAGCCTTTTTCAGCCGAAAACTCCGTGAAGCTCACTTCGc                                  >  1:115399/1‑48 (MQ=255)

                              gTTCGTAGCCTTTTTCAGCCGAAAACTCCGTGAAGCTCACTTCGCTTACGCCTGCCAGCTCTTTc              <  1:1304099/65‑1 (MQ=255)

                              gTTCGTAGCCTTTTTCAGCCGAAAACTCCGTGAAGCTCACTTCGCTTACGCCTGCCAGCTCTTTc              <  1:1408202/65‑1 (MQ=255)

                              gTTCGTAGCCTTTTTCAGCCGAAAACTCCGTGAAGCTCACTTCGCTTACGCCTGCCAGCTCTTTc              <  1:1236366/65‑1 (MQ=255)

                              gTTCGTAGCCTTTTTCAGCCGAAAACTCCGTGAAGCTCACTTCGCTTACGCCTGCCAGCTCTTTc              <  1:1198251/65‑1 (MQ=255)

                              gTTCGTAGCCTTTTTCAGCCGAAAACTCCGTGAAGCTCACTTCGCTTACGCCTGCCAGCTCTTTc              <  1:616340/65‑1 (MQ=255)

                                     gCCTTTTTCAGCCGCAAACTCCGTGAAGCTCACTTCGCTTACGCCTGCCAGCTCTTTCGACAGCGATTTc  <  1:615128/70‑1 (MQ=255)

                                     gCCTTTTTCAGCCGCAAACTCCGTGAAGCTCACTTCGCTTACGCCTGCCAGCTCTTTCGACAGCGATTTc  <  1:1010655/70‑1 (MQ=255)

                                     gCCTTTTTCAGCCGAAAACTCCGTGAAGCTCACTTCGCTTACGCCTGCCAGCTCTTTCGACAGCGATTTc  <  1:1128027/70‑1 (MQ=255)

                                     gCCTTTTTCAGCCGAAAACTCCGTGAAGCTCACTTCGCTTACGCCTGCCAGCTCTTTCGACAGCGATTTc  <  1:977840/70‑1 (MQ=255)

TGCTACGGTCTGCCGGGAAGCTCTCTTCCAGTTCGTAGCCTTTTTCAGCCGCAAACTCCGTGAAGCTCACTTCGCTTACGCCTGCCAGCTCTTTCGACAGCGATTTC  >  W3110S.gb/2286450‑2286556

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

N/A