Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F28 I3 R2
|
52 |
92.4 |
4932871 |
87.1% |
4296530 |
63.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
1,456,196 |
G→A |
A385V (GCG→GTG) |
yfaQ ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 1,456,196 | 0 | G | A | 100.0%
| 192.5
/ NA
| 62 | A385V (GCG→GTG) | yfaQ | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (26/36); total (26/36) |
ATGATAATGAACCGGATCGCCTGCATAGATGAGATCCTGCGTCCAGGCGGTCATCGTTCGCGCCCCCGTGGTCGCTGGCGAAGCAGAAACACGCTGCGTGGCGCTGCTGTCGGGGATGGTCAGG > minE/1456135‑1456258
|
aTGATAATGAACCGGATCGCCTGCATAGATGAGATCCTGCGTCCAGGCGGTCATCGTTCGCACCCCCGTg < 1:4249142/70‑1 (MQ=255)
gATAATGAACCGGATCGCCTGCATAGATGAGATCCTGCGTCCAGGCGGTCATCGTTCGCACCCCCGTGGTc > 1:352622/1‑71 (MQ=255)
gATAATGAACCGGATCGCCTGCATAGATGAGATCCTGCGTCCAGGCGGTCATCGTTCGCACCCCCGTGGTc > 1:2854438/1‑71 (MQ=255)
aTAATGAACCGGATCGCCTGCATAGATGAGATCCTGCGTCCAGGCGGTCATCGTTCGCACCCCCGTGGTCg > 1:1399211/1‑71 (MQ=255)
aTAATGAACCGGATCGCCTGCATAGATGAGATCCTGCGTCCAGGCGGTCATCGTTCGCACCCCCGTGGTCg > 1:3818155/1‑71 (MQ=255)
aTAATGAACCGGATCGCCTGCATAGATGAGATCCTGCGTCCAGGCGGTCATCGTTCGCACCCCCGTGGTCg > 1:7583/1‑71 (MQ=255)
tAATGAACCGGATCGCCTGCATAGATGAGATCCTGCGTCCAGGCGGTCATCGTTCGCACCCCCGTGGTCGc < 1:2941973/71‑1 (MQ=255)
ggATCGCCTGCATAGATGAGATCCTGCGTCCAGGCGGTCATCGTTCGCACCCCCGTGGTCGCTGGCGAAGc < 1:3135314/71‑1 (MQ=255)
ggATCGCCTGCATAGATGAGATCCTGCGTCCAGGCGGTCATCGTTCGCACCCCCGTGGTCGCTGGCGAAGc < 1:4597983/71‑1 (MQ=255)
ggATCGCCTGCATAGATGAGATCCTGCGTCCAGGCGGTCATCGTTCGCACCCCCGTGGTCGCTGGCGAAGc < 1:2906082/71‑1 (MQ=255)
gATCGCCTGCATAGATGAGATCCTGCGTCCAGGCGGTCATCGTTCGCACCCCCGTGGTCGCTGGCGAAGc < 1:2578007/70‑1 (MQ=255)
tCGCCTGCATAGATGAGATCCTGCGTCCAGGCGGTCATCGTTCGCACCCCCGTGGTCGCTGGCGAAGCAGa < 1:2050712/71‑1 (MQ=255)
tCGCCTGCATAGATGAGATCCTGCGTCCAGGCGGTCATCGTTCGCACCCCCGTGGTCGCTGGCGAAGCAGa < 1:3941089/71‑1 (MQ=255)
tCGCCTGCATAGATGAGATCCTGCGTCCAGGCGGTCATCGTTCGCACCCCCGTGGTCGCTGGCGAAGCAGa < 1:4174513/71‑1 (MQ=255)
tCGCCTGCATAGATGAGATCCTGCGTCCAGGCGGTCATCGTTCGCACCCCCGTGGTCGCTGGCGAAGCAGa < 1:1974335/71‑1 (MQ=255)
tCGCCTGCATAGATGAGATCCTGCGTCCAGGCGGTCATCGTTCGCACCCCCGTGGTCGCTGGCGAAGCAGa < 1:1731974/71‑1 (MQ=255)
cGCCTGCATAGATGAGATCCTGCGTCCAGGCGGTCATCGTTCGCACCCCCGTGGTCGCTGGCGAAGCAGa > 1:1290199/1‑70 (MQ=255)
cGCCTGCATAGATGAGATCCTGCGTCCAGGCGGTCATCGTTCGCACCCCCGTGGTCGCTGGCGAAGCAGa < 1:3505267/70‑1 (MQ=255)
cGCCTGCATAGATGAGATCCTGCGTCCAGGCGGTCATCGTTCGCACCCCCGTGGTCGCTGGCGAAGCAGa > 1:4462294/1‑70 (MQ=255)
cGCCTGCATAGATGAGATCCTGCGTCCAGGCGGTCATCGTTCGCACCCCCGTGGTCGCTGGCGAAGCAGa > 1:2088006/1‑70 (MQ=255)
cGCCTGCATAGATGAGATCCTGCGTCCAGGCGGTCATCGTTCGCACCCCCGTGGTCGCTGGCGAAGCAGa > 1:1365375/1‑70 (MQ=255)
tGCATAGATGAGATCCTGCGTCCAGGCGGTCATCGTTCGCACCCCCGTGGTCGCTGGCGAAGCAGAAacac > 1:4061893/1‑71 (MQ=255)
tGCATAGATGAGATCCTGCGTCCAGGCGGTCATCGTTCGCACCCCCGTGGTCGCTGGCGAAGCAGAAacac > 1:3810752/1‑71 (MQ=255)
tGCATAGATGAGATCCTGCGTCCAGGCGGTCATCGTTCGCACCCCCGTGGTCGCTGGCGAAGCAGAAacac > 1:1728785/1‑71 (MQ=255)
tGCATAGATGAGATCCTGCGTCCAGGCGGTCATCGTTCGCACCCCCGTGGTCGCTGGCGAAGCAGAAacac > 1:3215506/1‑71 (MQ=255)
tGCATAGATGAGATCCTGCGTCCAGGCGGTCATCGTTCGCACCCCCGTGGTCGCTGGCGAAGCAGAAaca > 1:1976188/1‑70 (MQ=255)
tGCATAGATGAGATCCTGCGTCCAGGCGGTCATCGTTCGCACCCCCGTGGTCGCTGGCGAAGCAGAAaca > 1:3612641/1‑70 (MQ=255)
gCATAGATGAGATCCTGCGTCCAGGCGGTCATCGTTCGCACCCCCGTGGTCGCTGGCGAAGCAGAAACACg > 1:825065/1‑71 (MQ=255)
gCATAGATGAGATCCTGCGTCCAGGCGGTCATCGTTCGCACCCCCGTGGTCGCTGGCGAAGCAGAAACACg > 1:3146552/1‑71 (MQ=255)
tGCGTCCAGGCGGTCATCGTTCGCACCCCCGTGGTCGCTGGCGAAGCAGaa < 1:4623098/51‑1 (MQ=255)
tGCGTCCAGGCGGTCATCGTTCGCACCCCCGTGGTCGCTGGCGAAGCAGaa < 1:2597873/51‑1 (MQ=255)
cGTCCAGGCGGTCATCGTTCGCACCCCCGTGGTCGCTGGCGAAGCAGAAACACGCTGCGTGGCGctgctg < 1:3108112/70‑1 (MQ=255)
cGTCCAGGCGGTCATCGTTCGCACCCCCGTGGTCGCTGGCGAAGCAGAAACACGCTGCGTGGCGctgctg < 1:2331102/70‑1 (MQ=255)
cGTCCAGGCGGTCATCGTTCGCACCCCCGTGGTCGCTGGCGAAGCAGAAACACGCTGCGTGGCGctgctg < 1:3949534/70‑1 (MQ=255)
cGTCCAGGCGGTCATCGTTCGCACCCCCGTGGTCGCTGGCGAAGCAGAAACACGCTGCGTGGCGctgctg < 1:3873129/70‑1 (MQ=255)
cGTCCAGGCGGTCATCGTTCGCACCCCCGTGGTCGCTGGCGAAGCAGAAACACGCTGCGTGGCGctgctg < 1:3786585/70‑1 (MQ=255)
cAGGCGGTCATCGTTCGCACCCCCGTGGTCGCTGGCGAAGCAGAAACACGCTGCGTGGCGCTGCTGTCggg > 1:344821/1‑71 (MQ=255)
cAGGCGGTCATCGTTCGCACCCCCGTGGTCGCTGGCGAAGCAGAAACACGCTGCGTGGCGCTGCTGTCggg > 1:1954239/1‑71 (MQ=255)
cAGGCGGTCATCGTTCGCACCCCCGTGGTCGCTGGCGAAGCAGAAACACGCTGCGTGGCGCTGCTGTCggg > 1:4765926/1‑71 (MQ=255)
cAGGCGGTCATCGTTCGCACCCCCGTGGTCGCTGGCGAAGCAGAAACACGCTGCGTGGCGCTGCTGTCggg < 1:2282877/71‑1 (MQ=255)
cAGGCGGTCATCGTTCGCACCCCCGTGGTCGCTGGCGAAGCAGAAACACGCTGCGTGGCGCTGCTGTCggg < 1:2617066/71‑1 (MQ=255)
cAGGCGGTCATCGTTCGCACCCCCGTGGTCGCTGGCGAAGCAGAAACACGCTGCGTGGCGCTGCTGTCggg < 1:2697422/71‑1 (MQ=255)
cAGGCGGTCATCGTTCGCACCCCCGTGGTCGCTGGCGAAGCAGAAACACGCTGCGTGGCGCTGCTGTCggg > 1:3662322/1‑71 (MQ=255)
cAGGCGGTCATCGTTCGCACCCCCGTGGTCGCTGGCGAAGCAGAAACACGCTGCGTGGCGCTGCTGTCggg < 1:3633368/71‑1 (MQ=255)
cAGGCGGTCATCGTTCGCACCCCCGTGGTCGCTGGCGAAGCAGAAACACGCTGCGTGGCGCTGCTGTCggg > 1:3500012/1‑71 (MQ=255)
cAGGCGGTCATCGTTCGCACCCCCGTGGTCGCTGGCGAAGCAGAAACACGCTGCGTGGCGCTGCTGTCggg > 1:3578608/1‑71 (MQ=255)
cAGGCGGTCATCGTTCGCACCCCCGTGGTCGCTGGCGAAGCAGAAACACGCTGCGTGGCGCTGCTGTCggg < 1:3404460/71‑1 (MQ=255)
gCGGTCATCGTTCGCACCCCCGTGGTCGCTGGCGAAGCAGAAACACGCTGCGTGGCgctgct < 1:4369442/62‑1 (MQ=255)
gCGGTCATCGTTCGCACCCCCGTGGTCGCTGGCGAAGCAGAAACACGCTGCGTGGCgctgct < 1:589336/62‑1 (MQ=255)
gCGGTCATCGTTCGCACCCCCGTGGTCGCTGGCGAAGCAGAAACACGCTGCGTGGCgctgct < 1:687045/62‑1 (MQ=255)
gCGGTCATCGTTCGCACCCCCGTGGTCGCTGGCGAAGCAGAAACACGCTGCGTGGCgctgct < 1:4879381/62‑1 (MQ=255)
gCGGTCATCGTTCGCACCCCCGTGGTCGCTGGCGAAGCAGAAACACGCTGCGTGGCgctgct < 1:3502310/62‑1 (MQ=255)
gCGGTCATCGTTCGCACCCCCGTGGTCGCTGGCGAAGCAGAAACACGCTGCGTGGCgctgct < 1:4599595/62‑1 (MQ=255)
gCGGTCATCGTTCGCACCCCCGTGGTCGCTGGCGAAGCAGAAACACGCTGCGTGGCgctgct < 1:1175869/62‑1 (MQ=255)
gCGGTCATCGTTCGCACCCCCGTGGTCGCTGGCGAAGCAGAAACACGCTGCGTGGCgctgct < 1:4232626/62‑1 (MQ=255)
gCGGTCATCGTTCGCACCCCCGTGGTCGCTGGCGAAGCAGAAACACGCTGCGTGGCgctgct < 1:2991762/62‑1 (MQ=255)
gCGGTCATCGTTCGCACCCCCGTGGTCGCTGGCGAAGCAGAAACACGCTGCGTGGCgctgct < 1:3649998/62‑1 (MQ=255)
gCGGTCATCGTTCGCACCCCCGTGGTCGCTGGCGAAGCAGAAACACGCTGCGTGGCgctgct < 1:2705308/62‑1 (MQ=255)
cATCGTTCGCACCCCCGTGGTCGCTGGCGAAGCAGAAACACGCTGCGTGGCgctgct < 1:3695276/57‑1 (MQ=255)
cGTTCGCACCCCCGTGGTCGCTGGCGAAGCAGAAACACGCTGCGTGGCGCTGCTGTCGGGGATGGTCAgg > 1:586066/1‑70 (MQ=255)
cGTTCGCACCCCCGTGGTCGCTGGCGAAGCAGAAACACGCTGCGTGGCGCTGCTGTCGGGGATGGTCAgg > 1:2084750/1‑70 (MQ=255)
cGTTCGCACCCCCGTGGTCGCTGGCGAAGCAGAAACACGCTGCGTGGCGCTGCTGTCGGGGATGGTCAgg > 1:2095608/1‑70 (MQ=255)
|
ATGATAATGAACCGGATCGCCTGCATAGATGAGATCCTGCGTCCAGGCGGTCATCGTTCGCGCCCCCGTGGTCGCTGGCGAAGCAGAAACACGCTGCGTGGCGCTGCTGTCGGGGATGGTCAGG > minE/1456135‑1456258
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
