Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F28 I3 R2
|
52 |
92.4 |
4932871 |
87.1% |
4296530 |
63.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
1,590,722 |
(T)6→5 |
coding (323/375 nt) |
yfeK → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 1,590,717 | 0 | T | . | 100.0%
| 363.3
/ NA
| 82 | coding (318/375 nt) | yfeK | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (47/35); total (47/35) |
GTCATCGATTACTGGGAAGCCGTATATTGTGAAGATCCCCGGTAAGAGCGATGAGAACGCACAGCCTTTTTTACATGCGTTAATTGCGCAGACGGATAAAACGGTGCCTGCGGAAGGAAATTAATCCGCTT > minE/1590651‑1590781
|
gtcATCGATTACTGGGAAGCCGTATATTGTGAAGATCCCCGGTAATAGCGATGAGAACGCACAGCCtttt < 1:2749705/70‑1 (MQ=255)
gtcATCGATTACTGGGAAGCCGTATATTGTGAAGATCCCCGGTAAGAGCGATGAGAACGCACAGCCtttt < 1:3349246/70‑1 (MQ=255)
gtcATCGATTACTGGGAAGCCGTATATTGTGAAGATCCCCGGTAAGAGCGATGAGAACGCACAGCCtttt < 1:9007/70‑1 (MQ=255)
gtcATCGATTACTGGGAAGCCGTATATTGTGAAGATCCCCGGTAAGAGCGATGAGAACGCACAGCCtttt < 1:4706428/70‑1 (MQ=255)
gtcATCGATTACTGGGAAGCCGTATATTGTGAAGATCCCCGGTAAGAGCGATGAGAACGCACAGCCtttt < 1:4064068/70‑1 (MQ=255)
gtcATCGATTACTGGGAAGCCGTATATTGTGAAGATCCCCGGTAAGAGCGATGAGAACGCACAGCCtttt < 1:2373007/70‑1 (MQ=255)
tcATCGATTACTGGGAAGCCGTATATTGTGAAGATCCCCGGTAAGAGCGATGAGAACGCACAGCCttttta < 1:2110483/71‑2 (MQ=255)
tcATCGATTACTGGGAAGCCGTATATTGTGAAGATCCCCGGTAAGAGCGATGAGAACGCACAGCCttttta < 1:840338/71‑2 (MQ=255)
tcATCGATTACTGGGAAGCCGTATATTGTGAAGATCCCCGGTAAGAGCGATGAGAACGCACAGCCttttta < 1:2087505/71‑2 (MQ=255)
tcATCGATTACTGGGAAGCCGTATATTGTGAAGATCCCCGGTAAGAGCGATGAGAACGCACAGCCttttta < 1:1955326/71‑2 (MQ=255)
cATCGATTACTGGGAAGCCGTATATTGTGAAGATCCCCGGTAAGAGCGATGAGAACGCACAGCCttttta < 1:1372625/70‑2 (MQ=255)
aTCGATTACTGGGAAGCCGTATATTGTGAAGATCCCCGGTAAGAGCGATGAGAACGCACAGCCtttttaca > 1:106006/1‑68 (MQ=255)
aTCGATTACTGGGAAGCCGTATATTGTGAAGATCCCCGGTAAGAGCGATGAGAACGCACAGCCtttttaca > 1:1984375/1‑68 (MQ=255)
aTCGATTACTGGGAAGCCGTATATTGTGAAGATCCCCGGTAAGAGCGATGAGAACGCACAGCCtttttaca > 1:3656284/1‑68 (MQ=255)
aTCGATTACTGGGAAGCCGTATATTGTGAAGATCCCCGGTAAGAGCGATGAGAACGCACAGCCtttttaca > 1:3645720/1‑68 (MQ=255)
aTCGATTACTGGGAAGCCGTATATTGTGAAGATCCCCGGTAAGAGCGATGAGAACGCACAGCCtttttaca > 1:1759357/1‑68 (MQ=255)
aTCGATTACTGGGAAGCCGTATATTGTGAAGATCCCCGGTAAGAGCGATGAGAACGCACAGCCttttta < 1:4113604/69‑2 (MQ=255)
gATTACTGGGAAGCCGTGTATTGTGAAGATCCCCGGTAAGAGCGATGAGAACGCACAGCC‑TTTTTACATGc > 1:1758376/1‑71 (MQ=255)
gATTACTGGGAAGCCGTATATTGTGAAGATCCCCGGTAAGAGCGATGAGAACGCACAGCC‑TTTTTACATg > 1:1719466/1‑70 (MQ=255)
gATTACTGGGAAGCCGTATATTGTGAAGATCCCCGGTAAGAGCGATGAGAACGCACAGCC‑TTTTTACATGc > 1:107682/1‑71 (MQ=255)
gATTACTGGGAAGCCGTATATTGTGAAGATCCCCGGTAAGAGCGATGAGAACGCACAGCC‑TTTTTACATGc > 1:1745410/1‑71 (MQ=255)
gATTACTGGGAAGCCGTATATTGTGAAGATCCCCGGTAAGAGCGATGAGAACGCACAGCC‑TTTTTACATGc > 1:699930/1‑71 (MQ=255)
gATTACTGGGAAGCCGTATATTGTGAAGATCCCCGGTAAGAGCGATGAGAACGCACAGCC‑TTTTTACATGc > 1:471404/1‑71 (MQ=255)
gATTACTGGGAAGCCGTATATTGTGAAGATCCCCGGTAAGAGCGATGAGAACGCACAGCC‑TTTTTACATGc > 1:56592/1‑71 (MQ=255)
gATTACTGGGAAGCCGTATATTGTGAAGATCCCCGGTAAGAGCGATGAGAACGCACAGCC‑TTTTTACATGc > 1:1875737/1‑71 (MQ=255)
gATTACTGGGAAGCCGTATATTGTGAAGATCCCCGGTAAGAGCGATGAGAACGCACAGCC‑TTTTTACATGc > 1:4567230/1‑71 (MQ=255)
gATTACTGGGAAGCCGTATATTGTGAAGATCCCCGGTAAGAGCGATGAGAACGCACAGCC‑TTTTTACATGc > 1:3666685/1‑71 (MQ=255)
gATTACTGGGAAGCCGTATATTGTGAAGATCCCCGGTAAGAGCGATGAGAACGCACAGCC‑TTTTTACATGc > 1:661399/1‑71 (MQ=255)
gATTACTGGGAAGCCGTATATTGTGAAGATCCCCGGTAAGAGCGATGAGAACGCACAGCC‑TTTTTACATGc > 1:4559445/1‑71 (MQ=255)
gATTACTGGGAAGCCGTATATTGTGAAGATCCCCGGTAAGAGCGATGAGAACGCACAGCC‑TTTTTACATGc > 1:3523993/1‑71 (MQ=255)
gATTACTGGGAAGCCGTATATTGTGAAGATCCCCGGTAAGAGCGATGAGAACGCACAGCC‑TTTTTACATGc > 1:4556424/1‑71 (MQ=255)
aCTGGGAAGCCGTATATTGTGAAGATCCCCGGTAAGAGCGATGAGAACGCACAGCC‑TTTTTACATGCGtt < 1:461719/70‑1 (MQ=255)
aCTGGGAAGCCGTATATTGTGAAGATCCCCGGTAAGAGCGATGAGAACGCACAGCC‑TTTTTACATGCGtt < 1:2469171/70‑1 (MQ=255)
aCTGGGAAGCCGTATATTGTGAAGATCCCCGGTAAGAGCGATGAGAACGCACAGCC‑TTTTTACATGCGtt < 1:2564880/70‑1 (MQ=255)
aCTGGGAAGCCGTATATTGTGAAGATCCCCGGTAAGAGCGATGAGAACGCACAGCC‑TTTTTACATGCGtt < 1:1462241/70‑1 (MQ=255)
cTGGGAAGCCGTATATTGTGAAGATCCCCGGTAAGAGCGATGAGAACGCACAGCC‑TTTTTACATGCGtt < 1:2357899/69‑1 (MQ=255)
gAAGCCGTATATTGTGAAGATCCCCGGTAAGAGCGATGAGAACGCACAGCC‑TTTTTACATGCGtt < 1:4624129/65‑1 (MQ=255)
aaGCCGTATATTGTGAAGATCCCCGGTAAGAGCGATGAGAACGCACAGCC‑TTTTTACATGCGTTAATTgcg > 1:252953/1‑71 (MQ=255)
aaGCCGTATATTGTGAAGATCCCCGGTAAGAGCGATGAGAACGCACAGCC‑TATTTACATGCGTTAATTgcg > 1:1583654/1‑71 (MQ=255)
atatTGTGAAGATCCCCGGTAAGAGCGATGAGAACGCACAGCC‑TTTTTACATGCGTTAATTGCGCAGACg > 1:2478003/1‑70 (MQ=255)
atatTGTGAAGATCCCCGGTAAGAGCGATGAGAACGCACAGCC‑TTTTTACATGCGTTAATTGCGCAGACg > 1:1285512/1‑70 (MQ=255)
atatTGTGAAGATCCCCGGTAAGAGCGATGAGAACGCACAGCC‑TTTTTACATGCGTTAATTGCGCAGACg > 1:23214/1‑70 (MQ=255)
atatTGTGAAGATCCCAGGTAAGAGCGATGAGAACGCACAGCC‑TTTTTACATGCGTTAATTGCGCAGACg > 1:1080561/1‑70 (MQ=255)
tatTGTGAAGATCCCCGGTAAGAGCGATGAGAACGCACAGCC‑TTTTTACATGCGTTAATTGCGCa < 1:3196860/65‑1 (MQ=255)
tatTGTGAAGATCCCCGGTAAGAGCGATGAGAACGCACAGCC‑TTTTTACATGCGTTAATTGCGCa < 1:4803953/65‑1 (MQ=255)
tatTGTGAAGATCCCCGGTAAGAGCGATGAGAACGCACAGCC‑TTTTTACATGCGTTAATTGCGCa < 1:4126462/65‑1 (MQ=255)
tatTGTGAAGATCCCCGGTAAGAGCGATGAGAACGCACAGCC‑TTTTTACATGCGTTAATTGCGCa < 1:1160835/65‑1 (MQ=255)
tatTGTGAAGATCCCCGGTAAGAGCGATGAGAACGCACAGCC‑TTTTTACATGCGTTAATTGCGCa < 1:2735334/65‑1 (MQ=255)
tatTGTGAAGATCCCCGGTAAGAGCGATGAGAACGCACAGCC‑TTTTTACATGCGTTAATTGCGCa < 1:1071333/65‑1 (MQ=255)
tatTGTGAAGATCCCCGGTAAGAGCGATGAGAACGCACAGCC‑TTTTTACATGCGTTAATTGCGCa < 1:1368937/65‑1 (MQ=255)
tatTGTGAAGATCCCCGGTAAGAGCGATGAGAACGCACAGCC‑TTTTTACATGCGTTAATTGCGCa < 1:944227/65‑1 (MQ=255)
gtgAAGATCCCCGGTAAGAGCGATGAGAACGCACAGCC‑TTTTTACATGCGTTAATTGCGCAGACGGATaa < 1:4513909/70‑1 (MQ=255)
gtgAAGATCCCCGGTAAGAGCGATGAGAACGCACAGCC‑TTTTTACATGCGTTAATTGCGCAGACGGATaa < 1:3274345/70‑1 (MQ=255)
gtgAAGATCCCCGGTAAGAGCGATGAGAACGCACAGCC‑TTTTTACATGCGTTAATTGCGCAGACGGATaa < 1:760152/70‑1 (MQ=255)
aGATCCCCGGTAAGAGCGATGAGAACGCAGAGCC‑TTTTTACATGCGTTAATTGCGCAGACGGATAAAACgg > 1:2758244/1‑71 (MQ=255)
aGATCCCCGGTAAGAGCGATGAGAACGCACAGCC‑TTTTTACATGCGTTAATTGCGCAGACGGATAAAACgg > 1:4910241/1‑71 (MQ=255)
aGATCCCCGGTAAGAGCGATGAGAACGCACAGCC‑TTTTTACATGCGTTAATTGCGCAGACGGATAAAACgg > 1:1346117/1‑71 (MQ=255)
aGATCCCCGGTAAGAGCGATGAGAACGCACAGCC‑TTTTTACATGCGTTAATTGCGCAGACGGATAAAACgg > 1:172594/1‑71 (MQ=255)
aGATCCCCGGTAAGAGCGATGAGAACGCACAGCC‑TTTTTACATGCGTTAATTGCGCAGACGGATAAAACgg > 1:2162204/1‑71 (MQ=255)
aGATCCCCGGTAAGAGCGATGAGAACGCACAGCC‑TTTTTACATGCGTTAATTGCGCAGACGGATAAAACgg > 1:512866/1‑71 (MQ=255)
gaaccccGGTAAGAGCGATGAGAACGCACAGCC‑TTTTTACATGCGTTAATTGCGCAGACGGATAAAACGGt < 1:806235/68‑1 (MQ=255)
gATCCCCGGTAAGAGCGATGAGAACGCACAGCC‑TTTTTACATGCGTTAATTGCGCAGACGGATAAAACGGt < 1:4217139/71‑1 (MQ=255)
gATCCCCGGTAAGAGCGATGAGAACGCACAGCC‑TTTTTACATGCGTTAATTGCGCAGACGGATAAAACGGt < 1:1624209/71‑1 (MQ=255)
gATCCCCGGTAAGAGCGATGAGAACGCACAGCC‑TTTTTACATGCGTTAATTGCGCAGACGGATAAAACGGt < 1:3775419/71‑1 (MQ=255)
gATCCCCGGTAAGAGCGATGAGAACGCACAGCC‑TTTTTACATGCGTTAATTGCGCAGACGGATAAAACGGt < 1:1335720/71‑1 (MQ=255)
gATCCCCGGTAAGAGCGATGAGAACGCACAGCC‑TTTTTACATGCGTTAATTGCGCAGACGGATAAAACGGt < 1:1341787/71‑1 (MQ=255)
gATCCCCGGTAAGAGCGATGAGAACGCACAGCC‑TTTTTACATGCGTTAATTGCGCAGACGGATAAAACGGt < 1:3230046/71‑1 (MQ=255)
gATCCCCGGTAAGAGCGATGAGAACGCACAGCC‑TTTTTACATGCGTTAATTGCGCAGACGGATAAAACGGt < 1:1856806/71‑1 (MQ=255)
gATCCCCGGTAAGAGCGATGAGAACGCACAGCC‑TTTTTACATGCGTTAATTGCGCAGACGGATAAAACGGt < 1:2017391/71‑1 (MQ=255)
gATCCCCGGTAAGAGCGATGAGAACGCACAGCC‑TTTTTACATGCGTTAATTGCGCAGACGGATAAAACGGt < 1:2462901/71‑1 (MQ=255)
gATCCCCGGTAAGAGAGATGAGAACGCACAGCC‑TTTTTACATGCGTTAATTGCGCAGACGGATAAAACGGt < 1:3017818/71‑1 (MQ=255)
gATCCCCGGTAAGAACGATGAGAACGCACAGCC‑TTTTTACATGCGTTAATTGCGCAGACGGATAAAACGGt < 1:3158403/71‑1 (MQ=255)
cccGGTAAGAGCGATGAGAACGCACAGCC‑TTTTTACATGCGTTAATTGCGCa < 1:3668460/52‑1 (MQ=255)
cGGTAAGAGCGATGAGAACGCACAGCC‑TTTTTACATGCGTTAATTGCGCAGACGGATAAAACGGTGCCTGc < 1:3877873/71‑1 (MQ=255)
gTAAGAGCGATGAGAACGCACAGCC‑TTTTTACATGCGTTAATTGCGCAGACGGATAAAACGGTGCCTGCg > 1:3507166/1‑70 (MQ=255)
gTAAGAGCGATGAGAACGCACAGCC‑TTTTTACATGCGTTAATTGCGCAGACGGATAAAACGGTGCCTGCg > 1:1423270/1‑70 (MQ=255)
gCGATGAGAACGCACAGCC‑TTTTTACATGCGTTAATTgcgc > 1:970224/1‑41 (MQ=255)
gCGATGAGAACGCACAGCC‑TTTTTACATGCGTTAATTGCGCAGACGGATAAAACGGTGCCTGCggaagga > 1:1088461/1‑70 (MQ=255)
gCGATGAGAACGCACAGCC‑TTTTTACATGCGTTAATTGCGCAGACGGATAAAACGGTGCCTGCggaagga > 1:3060220/1‑70 (MQ=255)
gCGATGAGAACGCACAGCC‑TTTTTACATGCGTTAATTGCGCAGACGGATAAAACGGTGCCTGCggaagga > 1:4731186/1‑70 (MQ=255)
gCGATGAGAACGCACAGCC‑TTTTTACATGCGTTAATTGCGCAGACGGATAAAACGGTGCCTGCggaagga > 1:1755883/1‑70 (MQ=255)
gCGATGAGAACGCACAGCC‑TTTTTACATGCGTTAATTGCGCAGACGGATAAAACGGTGCCTGCggaagga > 1:2436534/1‑70 (MQ=255)
tGAGAACGCACAGCC‑TTTTTACATGCGTTAATTGCGCAGACGGATAAAACGGTGCCTGCGGAAGGAAATTa < 1:1286082/71‑1 (MQ=255)
tGAGAACGCACAGCC‑TTTTTACATGCGTTAATTGCGCAGACGGATAAAACGGTGCCTGCGGAAGGAAATTa < 1:565874/71‑1 (MQ=255)
agaACGCACAGCC‑TTTTTACATGCGTTAATTGCGCAGACGTATAAAACGGTGCCTGCGGAAGGAAATTAAt > 1:395993/1‑71 (MQ=255)
agaACGCACAGCC‑TTTTTACATGCGTTAATTGCGCAGACGTATAAAACGGTGCCTGCGGAAGGAAATTAAt > 1:867208/1‑71 (MQ=255)
agaACGCACAGCC‑TTTTTACATGCGTTAATTGCGCAGACGTATAAAACGGTGCCTGCGGAAGGAAATTAAt > 1:1699477/1‑71 (MQ=255)
cGCACAGCC‑TTTTTACATGCGTTAATTGCGCAGACGGATAAAACGGt > 1:2770239/1‑47 (MQ=255)
cGCACAGCC‑TTTTTACATGCGTTAATTGCGCAGACGGATAAAACGGTGc > 1:3900020/1‑49 (MQ=255)
cGCACAGCC‑TTTTTACATGCGTTAATTGCGCAGACGGATAAAACGGTGCCTGCGGAAGGAAATTAAt > 1:4204737/1‑67 (MQ=255)
cGCACAGCC‑TTTTTACATGCGTTAATTGCGCAGACGGATAAAACGGTGCCTGCGGAAGGAAATTAATCCGc > 1:2462260/1‑71 (MQ=255)
cGCACAGCC‑TTTTTACATGCGTTAATTGCGCAGACGGATAAAACGGTGCCTGCGGAAGGAAATTAATCCGc > 1:2407069/1‑71 (MQ=255)
cGCACAGCC‑TTTTTACATGCGTTAATTGCGCAGACGGATAAAACGGTGCCTGCGGAAGGAAATTAATCCGc > 1:3017380/1‑71 (MQ=255)
cGCACAGCC‑TTTTTACATGCGTTAATTGCGCAGACGGATAAAACGGTGCCTGCGGAAGGAAATTAATCCGc > 1:3107237/1‑71 (MQ=255)
cGCACAGCC‑TTTTTACATGCGTTAATTGCGCAGACGGATAAAACGGTGCCTGCGGAAGGAAATTAATCCGc > 1:3591094/1‑71 (MQ=255)
cGCACAGCC‑TTTTTACATGCGTTAATTGCGCAGACGGATAAAACGGTGCCTGCGGAAGGAAATTAATCCGc > 1:936837/1‑71 (MQ=255)
gCACAGCC‑TTTTTACATGCGTTAATTGCGCAGACGGATAAAACGGTGCCTGCGGAAGGAAATTAATCCGCt > 1:1191350/1‑71 (MQ=255)
cacaGCC‑TTTTTACATGCGTTAATTGCGCAGACGGATAAAACGGTGCCTGCGGAAGGAAATTAATCCGCtt < 1:4692880/71‑1 (MQ=255)
cacaGCC‑TTTTTACATGCGTTAATTGCGCAGACGGATAAAACGGTGCCTGCGGAAGGAAATTAATCCGCtt < 1:935786/71‑1 (MQ=255)
|
GTCATCGATTACTGGGAAGCCGTATATTGTGAAGATCCCCGGTAAGAGCGATGAGAACGCACAGCCTTTTTTACATGCGTTAATTGCGCAGACGGATAAAACGGTGCCTGCGGAAGGAAATTAATCCGCTT > minE/1590651‑1590781
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
