Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F28 I3 R2
|
52 |
92.4 |
4932871 |
87.1% |
4296530 |
63.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
1,948,347 |
C→A |
intergenic (‑38/+81) |
gcvP ← / ← gcvH |
glycine decarboxylase, PLP‑dependent, subunit (protein P) of glycine cleavage complex/glycine cleavage complex lipoylprotein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 1,948,347 | 0 | C | A | 100.0%
| 318.5
/ NA
| 97 | intergenic (‑38/+81) | gcvP/gcvH | glycine decarboxylase, PLP‑dependent, subunit (protein P) of glycine cleavage complex/glycine cleavage complex lipoylprotein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (41/56); total (41/56) |
TTCAAGCTGGCTTAACGTCTGTGTCATGAGCGATGGTTCCTGAAACGTGCAGTGAATTGTGAACCTCTCTCCTTACGAAGAGAGTGAGGGTGAGGCATAAATTTTCCTCACCCTGATCCTCTCCCGCAGAA > minE/1948283‑1948413
|
ttCAAGCTGGCTTAACGTCTGTGTCATGAGCGATGGTTCCTGAAACGTGCAGTGAATTGTGAACatctct > 1:2526223/1‑70 (MQ=255)
ttCAAGCTGGCTTAACGTCTGTGTCATGAGCGATGGTTCCTGAAACGTGCAGTGAATTGTGAACAtctctc > 1:2832679/1‑71 (MQ=255)
ttCAAGCTGGCTTAACGTCTGTGTCATGAGCGATGGTTCCTGAAACGTGCAGTGAATTGTGAACAtctctc > 1:3049976/1‑71 (MQ=255)
ttCAAGCTGGCTTAACGTCTGTGTCATGAGCGATGGTTCCTGAAACGTGCAGTGAATTGTGAACAtctctc > 1:3137611/1‑71 (MQ=255)
ttCAAGCTGGCTTAACGTCTGTGTCATGAGCGATGGTTCCTGAAACGTGCAGTGAATTGTGAACAtctctc > 1:2183699/1‑71 (MQ=255)
ttCAAGCTGGCTTAACGTCTGTGTCATGAGCGATGGTTCCTGAAACGTGCAGTGAATTGTGAACAtctctc > 1:2163087/1‑71 (MQ=255)
ttCAAGCTGGCTTAACGTCTGTGTCATGAGCGATGGTTCCTGAAACGTGCAGTGAATTGTGAACAtctctc > 1:3469034/1‑71 (MQ=255)
ttCAAGCTGGCTTAACGTCTGTGTCATGAGCGATGGTTCCTGAAACGTGCAGTGAATTGTGAACAtctctc > 1:2008452/1‑71 (MQ=255)
ttCAAGCTGGCTTAACGTCTGTGTCATGAGCGATGGTTCCTGAAACGTGCAGTGAATTGTGAACAtctctc > 1:3587389/1‑71 (MQ=255)
ttCAAGCTGGCTTAACGTCTGTGTCATGAGCGATGGTTCCTGAAACGTGCAGTGAATTGTGAACAtctctc > 1:412660/1‑71 (MQ=255)
gCTTAACGTCTGTGTCATGAGCGATGGTTCCTGAAACGTGCAGTGAATTGTGAACATCTCTCCTTAc > 1:2276365/1‑67 (MQ=255)
gCTTAACGTCTGTGTCATGAGCGATGGTTCCTGAAACGTGCAGTGAATTGTGAACATCTCTCCTTACg > 1:3658243/1‑68 (MQ=255)
gCTTAACGTCTGTGTCATGAGCGATGGTTCCTGAAACGTGCAGTGAATTGTGAACATCTCTCCTTACg > 1:4438152/1‑68 (MQ=255)
gCTTAACGTCTGTGTCATGAGCGATGGTTCCTGAAACGTGCAGTGAATTGTGAACATCTCTCCTTACg > 1:976287/1‑68 (MQ=255)
gCTTAACGTCTGTGTCATGAGCGATGGTTCCTGAAACGTGCAGTGAATTGTGAACATCTCTCCTTACg > 1:1359064/1‑68 (MQ=255)
cTTAACGTCTGTGTCATTAGCGATGGTTCCTGAAACGTGCAGTGAATTGTGAACATCTCTCCTTACGAaga < 1:3097615/71‑1 (MQ=255)
cTTAACGTCTGTGTCATGAGCGATGGTTCCTGAAACGTGCAGTGAATTGTGAACATCTCTCCTTACGAaga < 1:4818722/71‑1 (MQ=255)
cTTAACGTCTGTGTCATGAGCGATGGTTCCTGAAACGTGCAGTGAATTGTGAACATCTCTCCTTACGAaga < 1:2542011/71‑1 (MQ=255)
cTTAACGTCTGTGTCATGAGCGATGGTTCCTGAAACGTGCAGTGAATTGTGAACATCTCTCCTTACGAaga < 1:1125792/71‑1 (MQ=255)
cTTAACGTCTGTGTCATGAGCGATGGTTCCTGAAACGTGCAGTGAATTGTGAACATCTCTCCTTACGAaga < 1:2381402/71‑1 (MQ=255)
cTTAACGTCTGTGTCATGAGCGATGGTTCCTGAAACGTGCAGTGAATTGTGAACATCTCTCCTTACGAaga < 1:714155/71‑1 (MQ=255)
cTTAACGTCTGTGTCATGAGCGATGGTTCCTGAAACGTGCAGTGAATTGTGAACATCTCTCCTTACGAaga < 1:3224360/71‑1 (MQ=255)
cTTAACGTCTGTGTCATGAGCGATGGTTCCTGAAACGTGCAGTGAATTGTGAACATCTCTCCTTACGAaga < 1:695130/71‑1 (MQ=255)
cTTAACGTCTGTGTCATGAGCGATGGTTCCTGAAACGTGCAGTGAATTGTGAACATCTCTCCTTACGAaga < 1:3408455/71‑1 (MQ=255)
cTTAACGTCTGTGTCATGAGCGATGGTTCCTGAAACGTGCAGTGAATTGTGAACATCTCTCCTTACGAaga < 1:2246974/71‑1 (MQ=255)
cTTAACGTCTGTGTCATGAGCGATGGTTCCTGAAACGTGCAGTGAATTGTGAACATCTCTCCTTACGAaga < 1:646739/71‑1 (MQ=255)
cTTAACGTCTGTGTCATGAGCGATGGTTCCTGAAACGTGCAGTGAATTGTGAACATCTCTCCTTACGAaga < 1:597140/71‑1 (MQ=255)
cTTAACGTCTGTGTCATGAGCGATGGTTCCTGAAACGTGCAGTGAATTGTGAACATCTCTCCTTACGAaga < 1:1445351/71‑1 (MQ=255)
cTTAACGTCTGTGTCATGAGCGATGGTTCCTGAAACGTGCAGTGAATTGTGAACATCTCTCCTTACGAaga < 1:1947639/71‑1 (MQ=255)
cTTAACGTCTGTGTCATGAGCGATGGTTCCTGAAACGTGCAGTGAATTGTGAACATCTCTCCTTACGAaga < 1:3778131/71‑1 (MQ=255)
cTTAACGTCTGTGTCATGAGCGATGGTTCCTGAAACGTGCAGTGAATTGTGAACATCTCTCCTTACGAaga < 1:1792784/71‑1 (MQ=255)
cTTAACGTCTGTGTCATGAGCGATGGTTCCTGAAACGTGCAGTGAATTGTGAACATCTCTCCTTACGAaga < 1:1526144/71‑1 (MQ=255)
cTTAACGTCTGTGTCATGAGCGATGGTTCCTGAAACGTGCAGTGAATTGTGAACATCTCTCCTTACGAaga < 1:435968/71‑1 (MQ=255)
aaCGTCTGTGTCATGAGCGATGGTTCCTGAAACGTGCAGTGAATTGTGAACATCTCTCCTTACGAagagag > 1:200987/1‑71 (MQ=255)
aaCGTCTGTGTCATGAGCGATGGTTCCTGAAACGTGCAGTGAATTGTGAACATCTCTCCTTACGAagagag > 1:3496913/1‑71 (MQ=255)
aaCGTCTGTGTCATGAGCGATGGTTCCTGAAACGTGCAGTGAATTGTGAACATCTCTCCTTACGAagagag > 1:3988679/1‑71 (MQ=255)
aaCGTCTGTGTCATGAGCGATGGTTCCTGAAACGTGCAGTGAATTGTGAACATCTCTCCTTACGAagagag > 1:1376764/1‑71 (MQ=255)
aaCGTCTGTGTCATGAGCGATGGTTCCTGAAACGTGCAGTGAATTGTGAACATCTCTCCTTACGAagagag > 1:1562059/1‑71 (MQ=255)
aCGTCTGTGTCATGAGCGATGGTTCCTGAAACGTGCAGTGAATTGTGAACATCTCTCCTTACGAAGAGAgt < 1:4794403/71‑1 (MQ=255)
aCGTCTGTGTCATGAGCGATGGTTCCTGAAACGTGCAGTGAATTGTGAACATCTCTCCTTACGAAGAGAgt < 1:1095601/71‑1 (MQ=255)
aCGTCTGTGTCATGAGCGATGGTTCCTGAAACGTGCAGTGAATTGTGAACATCTCTCCTTACGAAGAGAgt < 1:80169/71‑1 (MQ=255)
aCGTCTGTGTCATGAGCGATGGTTCCTGAAACGTGCAGTGAATTGTGAACATCTCTCCTTACGAAGAGAgt < 1:2874416/71‑1 (MQ=255)
aCGTCTGTGTCATGAGCGATGGTTCCTGAAACGTGCAGTGAATTGTGAACATCTCTCCTTACGAAGAGAgt < 1:1281466/71‑1 (MQ=255)
aCGTCTGTGTCATGAGCGATGGTTCCTGAAACGTGCAGTGAATTGTGAACATCTCTCCTTACGAAGAGAgt < 1:250809/71‑1 (MQ=255)
aCGTCTGTGTCATGAGCGATGGTTCCTGAAACGTGCAGTGAATTGTGAACATCTCTCCTTACGAAGAGAgt < 1:1861875/71‑1 (MQ=255)
aCGTCTGTGTCATGAGCGATGGTTCCTGAAACGTGCAGTGAATTGTGAACATCTCTCCTTACGAAGAGAgt < 1:2034923/71‑1 (MQ=255)
tgtgTCATGAGCGATGGTTCCTGAAACGTGCAGTGAATTGTGAACATCTCTCCTTACGAAGAGAgtgaggg > 1:1674177/1‑71 (MQ=255)
tgtgTCATGAGCGATGGTTCCTGAAACGTGCAGTGAATTGTGAACATCTCTCCTTACGAAGAGAgtgaggg > 1:770880/1‑71 (MQ=255)
tgtCATGAGCGATGGTTCCTGAAACGTGCAGTGAATTGTGAACATCTCTCCTTACGAAGAGAgtgagggt < 1:2961610/70‑1 (MQ=255)
tgtCATGAGCGATGGTTCCTGAAACGTGCAGTGAATTGTGAACATCTCTCCTTACGAAGAGAgtgagggt < 1:1919346/70‑1 (MQ=255)
tCATGAGCGATGGTTCCTGAAACGTGCAGTGAATTGTGAACATCTCTCCTTACGAaga < 1:4880372/58‑1 (MQ=255)
tCATGAGCGATGGTTCCTGAAACGTGCAGTGAATTGTGAACATCTCTCCTTACGAaga < 1:1468260/58‑1 (MQ=255)
tCATGAGCGATGGTTCCTGAAACGTGCAGTGAATTGTGAACATCTCTCCTTACGAaga < 1:4012491/58‑1 (MQ=255)
tCATGAGCGATGGTTCCCGAAACGTGCAGTGAATTGTGAACATCTCTCCTTACGAaga < 1:1779196/58‑1 (MQ=255)
aTGAGCGATGGTTCCTGAAACGTGCAGTGAATTGTGAACATCTCTCCTTACGAAGAGAgtgagggtgagg > 1:259702/1‑70 (MQ=255)
aTGGTTCCTGAAACGTGCAGTGAATTGTGAACATCTCTCCTTACGAaga < 1:4707187/49‑1 (MQ=255)
aTGGTTCCTGAAACGTGCAGTGAATTGTGAACATCTCTCCTTACGAAGAGAGTGAGGGTGAGGCATAAAt < 1:1445441/70‑1 (MQ=255)
ggTTCCTGAAACGTGCAGTGAATTGTGAACATCTCTCCTTACGAAGAGAGTGAGGGTGAGGCATAAAtttt > 1:4440667/1‑71 (MQ=255)
gTTCCTGAAACGTGCTGTGAATTGTGAACATCTCTCCTTACGAaga < 1:985286/46‑1 (MQ=39)
gTTCCTGAAACGTGCAGTGAATTGTGAACATCTCTCCTTACGAAGAGAGTGAGGGTGAGGCATAAAtttt < 1:913361/70‑1 (MQ=255)
gTTCCTGAAACGTGCAGTGAATTGTGAACATCTCTCCTTACGAAGAGAGTGAGGGTGAGGCATAAAtttt < 1:4596226/70‑1 (MQ=255)
gTTCCTGAAACGTGCAGTGAATTGTGAACATCTCTCCTTACGAAGAGAGTGAGGGTGAGGCATAAAtttt < 1:2914992/70‑1 (MQ=255)
gTTCCTGAAACGTGCAGTGAATTGTGAACATCTCTCCTTACGAAGAGAGTGAGGGTGAGGCATAAAtttt < 1:4067746/70‑1 (MQ=255)
gTTCCTGAAACGTGCAGTGAATTGTGAACATCTCTCCTTACGAAGAGAGTGAGGGTGAGGCATAAAtttt < 1:3955753/70‑1 (MQ=255)
gTTCCTGAAACGTGCAGTGAATTGTGAACATCTCTCCTTACGAAGAGAGTGAGGGTGAGGCATAAAtttt < 1:1969981/70‑1 (MQ=255)
gAAACGTGCAGTGAATTGTGAACATCTCTCCTTACGAAGAGAGTGAGGGTGAGGCATAAATTTTCCTCAcc > 1:3037622/1‑71 (MQ=255)
aCGTGCAGTGAATTGTGAACATCTCTCCTTACGAAGAGAGTGAGGGTGAGGCATAAATTTTCCTCa > 1:1835876/1‑66 (MQ=255)
aCGTGCAGTGAATTGTGAACATCTCTCCTTACGAAGAGAGTGAGGGTGAGGCATAAATTTTCCTCACCCt > 1:888645/1‑70 (MQ=255)
aCGTGCAGTGAATTGTGAACATCTCTCCTTACGAAGAGAGTGAGGGTGAGGCATAAATTTTCCTCACCCt > 1:2491077/1‑70 (MQ=255)
aCGTGCAGTGAATTGTGAACATCTCTCCTTACGAAGAGAGTGAGGGTGAGGCATAAATTTTCCTCACCCt > 1:2300947/1‑70 (MQ=255)
aCGTGCAGTGAATTGTGAACATCTCTCCTTACGAAGAGAGTGAGGGTGAGGCATAAATTTTCCTCACCCt > 1:3560092/1‑70 (MQ=255)
aCGTGCAGTGAATTGTGAACATCTCTCCTTACGAAGAGAGTGAGGGTGAGGCATAAATTTTCCTCACCCt > 1:105751/1‑70 (MQ=255)
aCGTGCAGTGAATTGTGAACATCTCTCCTTACGAAGAGAGTGAGGGTGAGGCATAAATTTTCCTCACCCt > 1:1276578/1‑70 (MQ=255)
aCGTGCAGTGAATTGTGAACATCTCTCCTTACGAAGAGAGTGAGGGTGAGGCATAAATTTTCCTCACCCt > 1:133267/1‑70 (MQ=255)
aCGTGCAGTGAATTGTGAACATCTCTCCTTACGAAGAGAGTGAGGGTGAGGCATAAATTTTCCTCACCCt > 1:3365288/1‑70 (MQ=255)
aCGTGCAGTGAATTGTGAACATCTCTCCTTACGAAGAGAGTGAGGGTGAGGCATAAATTTTCCTCACCCt > 1:3277970/1‑70 (MQ=255)
aCGTGCAGTGAATTGTGAACATCTCTCCTTACGAAGAGAGTGAGGGTGAGGCATAAATTTTCCTCACCCt > 1:603021/1‑70 (MQ=255)
tGCTGTGAATTGTGAACATCTCTCCTTACGAAGAGAGTGAGGGTGAGGCATAAATTTTCCTCACCCTGATc < 1:1170416/71‑1 (MQ=255)
tGCAGTGAATTGTGAACATCTCTCCTTACGAAGAGAgt < 1:2266214/38‑1 (MQ=255)
tGCAGTGAATTGTGAACATCTCTCCTTACGAAGAGAGTGAGGGTGAGGCATAAATTTTCCTCACCCTGATc < 1:719913/71‑1 (MQ=255)
tGCAGTGAATTGTGAACATCTCTCCTTACGAAGAGAGTGAGGGTGAGGCATAAATTTTCCTCACCCTGATc < 1:122819/71‑1 (MQ=255)
tGCAGTGAATTGTGAACATCTCTCCTTACGAAGAGAGTGAGGGTGAGGCATAAATTTTCCTCACCCTGATc < 1:271414/71‑1 (MQ=255)
tGCAGTGAATTGTGAACATCTCTCCTTACGAAGAGAGTGAGGGTGAGGCATAAATTTTCCTCACCCTGATc < 1:1324774/71‑1 (MQ=255)
tGCAGTGAATTGTGAACATCTCTCCTTACGAAGAGAGTGAGGGTGAGGCATAAATTTTCCTCACCCTGATc < 1:2289130/71‑1 (MQ=255)
tGCAGTGAATTGTGAACATCTCTCCTTACGAAGAGAGTGAGGGTGAGGCATAAATTTTCCTCACCCTGATc < 1:3107381/71‑1 (MQ=255)
tGCAGTGAATTGTGAACATCTCTCCTTACGAAGAGAGTGAGGGTGAGGCATAAATTTTCCTCACCCTGATc < 1:258123/71‑1 (MQ=255)
tGCAGTGAATTGTGAACATCTCTCCTTACGAAGAGAGTGAGGGTGAGGCATAAATTTTCCTCACACTGATc < 1:4402231/71‑1 (MQ=255)
gTGAATTGTGAACATCTCTCCTTACGAAGAGAGTGAGGGTGAGGCATAAATTTTCCTCa < 1:4810283/59‑1 (MQ=255)
gTGAATTGTGAACATCTCTCCTTACGAAGAGAGTGAGGGTGAGGCATAAATTTTCCTCa < 1:704808/59‑1 (MQ=255)
gTGAATTGTGAACATCTCTCCTTACGAAGAGAGTGAGGGTGAGGCATAAATTTTCCTCa < 1:2290152/59‑1 (MQ=255)
gtgAACATCTCTCCTTACGAAGAGAgtgagggtga > 1:4677678/1‑35 (MQ=255)
gtgAACATCTCTCCTTACGAAGAGAgtgagggtga > 1:669006/1‑35 (MQ=255)
gtgAACATCTCTCCTTACGAAGAGAgtgagggtga > 1:994875/1‑35 (MQ=255)
gtgAACATCTCTCCTTACGAAGAGAGTGAGGGTGAGGCATAAATTTTCCTCACCCTGATCCTCTccc > 1:3123325/1‑67 (MQ=255)
gtgAACATCTCTCCTTACGAAGAGAGTGAGGGTGAGGCATAAATTTTCCTCACCCTGATCCTCTCCCg > 1:3864541/1‑68 (MQ=255)
gtgAACATCTCTCCTTACGAAGAGAGTGAGGGTGAGGCATAAATTTTCCTCACCCTGATCCTCTCCCg > 1:1147291/1‑68 (MQ=255)
gAACATCTCTCCTTACGAAGAGAGTGAGGGTGAGGCATAAATTTTCCTCACCCTGATc < 1:3822503/58‑1 (MQ=255)
aaCATCTCTCCTTACGAAGAGAGTGAGGGTGAGGCATAAATTTTCCTCACCCTGATCCTCTCCCGCagaa < 1:3174307/70‑1 (MQ=255)
|
TTCAAGCTGGCTTAACGTCTGTGTCATGAGCGATGGTTCCTGAAACGTGCAGTGAATTGTGAACCTCTCTCCTTACGAAGAGAGTGAGGGTGAGGCATAAATTTTCCTCACCCTGATCCTCTCCCGCAGAA > minE/1948283‑1948413
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
