Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F28 I3 R2
|
52 |
92.4 |
4932871 |
87.1% |
4296530 |
63.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
2,039,506 |
C→T |
V137I (GTT→ATT) |
ribB ← |
3,4 dihydroxy‑2‑butanone‑4‑phosphate synthase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,039,506 | 0 | C | T | 100.0%
| 414.1
/ NA
| 126 | V137I (GTT→ATT) | ribB | 3,4 dihydroxy‑2‑butanone‑4‑phosphate synthase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (36/90); total (36/90) |
Only 100 of 126 total aligned reads displayed.
ATCAATAGTTGCTTCAGTATGACCGCCACGCGTCAGTACACCACCTGCCTGAGCGCGAAGTGGGAAAACGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGCCATCGGCAATCGCTGCGCGAACGGTCGTAA > minE/2039438‑2039571
|
aTCAATAGTTGCTTCAGTATGACCGCCACGCGTCAGTACACCACCTGCCTGAGCGCGAAGTGGGAAAATGt < 1:3941102/71‑1 (MQ=255)
aTCAATAGTTGCTTCAGTATGACCGCCACGCGTCAGTACACCACCTGCCTGAGCGCGAAGTGGGAAAATGt > 1:1129706/1‑71 (MQ=255)
gCTTCAGTATGACCGCCACGCGTCAGTACACCACCTGCCTGAGCGCGAAGTGGGAAAATGTGGCCAGGAc > 1:4729029/1‑70 (MQ=255)
gCTTCAGTATGACCGCCACGCGTCAGTACACCACCTGCCTGAGCGCGAAGTGGGAAAATGTGGCCAGGAc > 1:3969425/1‑70 (MQ=255)
gCTTCAGTATGACCGCCACGCGTCAGTACACCACCTGCCTGAGCGCGAAGTGGGAAAATGTGGCCAGGAc > 1:844216/1‑70 (MQ=255)
gCTTCAGTATGACCGCCACGCGTCAGTACACCACCTGCCTGAGCGCGAAGTGGGAAAATGTGGCCAGGAc > 1:3693773/1‑70 (MQ=255)
gCTTCAGTATGACCGCCACGCGTCAGTACACCACCTGCCTGAGCGCGAAGTGGGAAAATGTGGCCAGGAc > 1:2949218/1‑70 (MQ=255)
gCTTCAGTATGACCGCCACGCGTCAGTACACCACCTGCCTGAGCGCGAAGTGGGAAAATGTGGCCAGGAc > 1:335857/1‑70 (MQ=255)
gCTTCAGTATGACCGCCACGCGTCAGTACACCACCTGCCTGAGCGCGAAGTGGGAAAATGTGGCCAGGAc > 1:567409/1‑70 (MQ=255)
gCTTCAGTATGACCGCCACGCGTCAGTACACCACCTGCCTGAGCGCGAAGTGGGAAAATGTGGCCAGGAc > 1:4332696/1‑70 (MQ=255)
gCTTCAGTATGACCGCCACGCGTCAGTACACCACCTGCCTGAGCGCGAAGTGGGAAAATGTGGCCAGGAc > 1:2247542/1‑70 (MQ=255)
gCTTCAGTATGACCGCCACGCGTCAGTACACCACCTGCCTGAGCGCGAAGTGGGAAAATGTGGCCAGGAc > 1:390210/1‑70 (MQ=255)
cAGTATGACCGCCACGCGTCAGTACACCACCTGCCTGAGCGCGAAGTGGGAAAATGTGGCCAGGACGAtt > 1:1080568/1‑70 (MQ=255)
gTATGACCGCCACGCGTCAGTACACCACCTGCCTGAGCGCGAAGTGGGAAAATGTGGCCAGGACGATTCAg < 1:2378077/71‑1 (MQ=255)
gTATGACCGCCACGCGTCAGTACACCACCTGCCTGAGCGCGAAGTGGGAAAATGTGGCCAGGACGATTCAg < 1:170038/71‑1 (MQ=255)
gTATGACCGCCACGCGTCAGTACACCACCTGCCTGAGCGCGAAGTGGGAAAATGTGGCCAGGACGATTCAg < 1:821916/71‑1 (MQ=255)
gTATGACCGCCACGCGTCAGTACACCACCTGCCTGAGCGCGAAGTGGGAAAATGTGGCCAGGACGATTCAg < 1:2295491/71‑1 (MQ=255)
gTATGACCGCCACGCGTCAGTACACCACCTGCCTGAGCGCGAAGTGGGAAAATGTGGCCAGGACGATTCAg < 1:4357650/71‑1 (MQ=255)
gTATGACCGCCACGCGTCAGTACACCACCTGCCTGAGCGCGAAGTGGGAAAATGTGGCCAGGACGATTCAg < 1:315776/71‑1 (MQ=255)
gTATGACCGCCACGCGTCAGTACACCACCTGCCTGAGCGCGAAGTGGGAAAATGTGGCCAGGACGATTCAg < 1:1450952/71‑1 (MQ=255)
gTATGACCGCCACGCGTCAGTACACCACCTGCCTGAGCGCGAAGTGGGAAAATGTGGCCAGGACGATTCAg < 1:3896058/71‑1 (MQ=255)
gTATGACCGCCACGCGTCAGTACACCACCTGCCTGAGCGCGAAGTGGGAAAATGTGGCCAGGACGATTCAg < 1:2556954/71‑1 (MQ=255)
gTATGACCGCCACGCGTCAGTACACCACCTGCCTGAGCGCGAAGTGGGAAAATGTGGCCAGGACGATTCAg < 1:1181840/71‑1 (MQ=255)
aCCGCCACGCGTCAGTACACCACCTGCCTGAGCGCGAAGTGGGAAAATGTGGCCAGGACGATTCAGATCt < 1:294940/70‑1 (MQ=255)
aCCGCCACGCGTCAGTACACCACCTGCCTGAGCGCGAAGTGGGAAAATGTGGCCAGGACGATTCAGATCt < 1:2539550/70‑1 (MQ=255)
aCCGCCACGCGTCAGTACACCACCTGCCTGAGCGCGAAGTGGGAAAATGTGGCCAGGACGATTCAGATCt < 1:4151199/70‑1 (MQ=255)
aCCGCCACGCGTCAGTACACCACCTGCCTGAGCGCGAAGTGGGAAAATGTGGCCAGGACGATTCAGATCt < 1:507344/70‑1 (MQ=255)
aCCGCCACGCGTCAGTACACCACCTGCCTGAGCGCGAAGTGGGAAAATGTGGCCAGGACGATTCAGATCt < 1:1543336/70‑1 (MQ=255)
aCCGCCACGCGTCAGTACACCACCTGCCTGAGCGCGAAGTGGGAAAATGTGGCCAGGACGATTCAGATCt < 1:381446/70‑1 (MQ=255)
aCCGCCACGCGTCAGTACACCACCTGCCTGAGCGCGAAGTGGGAAAATGTGGCCAGGACGATTCAGATCt < 1:885891/70‑1 (MQ=255)
aCCGCCACGCGTCAGTACACCACCTGCCTGAGCGCGAAGTGGGAAAATGTGGCCAGGACGATTCAGATCt < 1:1197523/70‑1 (MQ=255)
cgcgTCAGTACACCACCTGCCTGAGCGCGAAGTGGGAAAATGTGGCCAGGACGATTCAGATCTGACGGttt < 1:3558889/71‑1 (MQ=255)
cgcgTCAGTACACCACCTGCCTGAGCGCGAAGTGGGAAAATGTGGCCAGGACGATTCAGATCTGACGGttt < 1:2459485/71‑1 (MQ=255)
cgcgTCAGTACACCACCTGCCTGAGCGCGAAGTGGGAAAATGTGGCCAGGACGATTCAGATCTGACGGttt < 1:2832667/71‑1 (MQ=255)
cgcgTCAGTACACCACCTGCCTGAGCGCGAAGTGGGAAAATGTGGCCAGGACGATTCAGATCTGACGGttt < 1:443611/71‑1 (MQ=255)
aGTACACCACCTGCCTGAGCGCGAAGTGGGAAAATGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGcc < 1:4652608/71‑1 (MQ=255)
aGTACACCACCTGCCTGAGCGCGAAGTGGGAAAATGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGcc < 1:4072488/71‑1 (MQ=255)
aGTACACCACCTGCCTGAGCGCGAAGTGGGAAAATGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGcc < 1:3963905/71‑1 (MQ=255)
aGTACACCACCTGCCTGAGCGCGAAGTGGGAAAATGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGcc < 1:2870912/71‑1 (MQ=255)
aGTACACCACCTGCCTGAGCGCGAAGTGGGAAAATGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGcc < 1:3840227/71‑1 (MQ=255)
aGTACACCACCTGCCTGAGCGCGAAGTGGGAAAATGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGcc < 1:2484817/71‑1 (MQ=255)
aGTACACCACCTGCCTGAGCGCGAAGTGGGAAAATGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGcc < 1:784978/71‑1 (MQ=255)
aGTACACCACCTGCCTGAGCGCGAAGTGGGAAAATGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGcc < 1:2322174/71‑1 (MQ=255)
gTACACCACCTGCCTGAGCGCGAAGTGGGAAAATGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGCCa < 1:2813433/71‑1 (MQ=255)
gTACACCACCTGCCTGAGCGCGAAGTGGGAAAATGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGCCa < 1:1226199/71‑1 (MQ=255)
gTACACCACCTGCCTGAGCGCGAAGTGGGAAAATGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGCCa < 1:1541284/71‑1 (MQ=255)
gTACACCACCTGCCTGAGCGCGAAGTGGGAAAATGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGCCa < 1:1576838/71‑1 (MQ=255)
gTACACCACCTGCCTGAGCGCGAAGTGGGAAAATGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGCCa < 1:3724640/71‑1 (MQ=255)
gTACACCACCTGCCTGAGCGCGAAGTGGGAAAATGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGCCa < 1:4055385/71‑1 (MQ=255)
gTACACCACCTGCCTGAGCGCGAAGTGGGAAAATGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGCCa < 1:3629512/71‑1 (MQ=255)
gTACACCACCTGCCTGAGCGCGAAGTGGGAAAATGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGCCa < 1:800711/71‑1 (MQ=255)
gTACACCACCTGCCTGAGCGCGAAGTGGGAAAATGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGCCa < 1:3473903/71‑1 (MQ=255)
gTACACCACCTGCCTGAGCGCGAAGTGGGAAAATGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGCCa < 1:4476024/71‑1 (MQ=255)
gTACACCACCTGCCTGAGCGCGAAGTGGGAAAATGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGCCa < 1:4421190/71‑1 (MQ=255)
gTACACCACCTGCCTGAGCGCGAAGTGGGAAAATGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGCCa < 1:2435397/71‑1 (MQ=255)
caccacCTGCCTGAGCGCGAAGTGGGAAAATGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGCCATCg > 1:4689152/1‑71 (MQ=255)
accTGCCTGAGCGCGAAGTGGGAAAATGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGCCATCGGCaa > 1:3302676/1‑71 (MQ=255)
accTGCCTGAGCGCGAAGTGGGAAAATGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGCCATCGGCaa > 1:1371555/1‑71 (MQ=255)
accTGCCTGAGCGCGAAGTGGGAAAATGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGCCATCGGCaa > 1:1033238/1‑71 (MQ=255)
tgcctgAGCGCGAAGTGGGAAAATGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGCCATCGGCAATCg > 1:308625/1‑71 (MQ=255)
tgcctgAGCGCGAAGTGGGAAAATGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGCCATCGGCAATCg > 1:1785264/1‑71 (MQ=255)
tgcctgAGCGCGAAGTGGGAAAATGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGCCATCGGCAATCg > 1:2494799/1‑71 (MQ=255)
tgcctgAGCGCGAAGTGGGAAAATGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGCCATCGGCAATCg > 1:2338967/1‑71 (MQ=255)
tgcctgAGCGCGAAGTGGGAAAATGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGCCATCGGCAATCg > 1:1359894/1‑71 (MQ=255)
tgcctgAGCGCGAAGTGGGAAAATGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGCCATCGGCAATCg > 1:2761230/1‑71 (MQ=255)
cctgAGCGCGAAGTGGGAAAATGTGGCCAGGACGATTCAGATCTg > 1:4397372/1‑45 (MQ=255)
cctgAGCGCGAAGTGGGAAAATGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGCCATCGGCAATCGCt > 1:1683633/1‑71 (MQ=255)
cctgAGCGCGAAGTGGGAAAATGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGCCATCGGCAATCGCt > 1:1118988/1‑71 (MQ=255)
cctgAGCGCGAAGTGGGAAAATGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGCCATCGGCAATCGCt > 1:3906471/1‑71 (MQ=255)
gcgcGAAGTGGGAAAATGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGCCAt > 1:913269/1‑55 (MQ=255)
gcgcGAAGTGGGAAAATGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGCCAt > 1:1945600/1‑55 (MQ=255)
gcgcGAAGTGGGAAAATGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGCCATCGGCAATCGCTGcgcg < 1:416097/71‑1 (MQ=255)
gcgcGAAGTGGGAAAATGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGCCATCGGCAATCGCTGcgcg < 1:205644/71‑1 (MQ=255)
gcgcGAAGTGGGAAAATGTGGCCAGGACGATACAGATCTGACGGTATTGCGCCAt > 1:370648/1‑55 (MQ=255)
cgcgAAGTGGGAAAATGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGCCATCGGCAATCGCTGcgcg < 1:1560787/70‑1 (MQ=255)
cgcgAAGTGGGAAAATGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGCCATCGGCAATCGCTGcgcg < 1:3364147/70‑1 (MQ=255)
aGTGGGAAAATGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGCCATCGGCAATCGCTGCGCGAACGGt < 1:3779697/71‑1 (MQ=255)
aGTGGGAAAATGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGCCATCGGCAATCGCTGCGCGAACGGt < 1:106087/71‑1 (MQ=255)
aGTGGGAAAATGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGCCATCGGCAATCGCTGCGCGAACGGt < 1:709920/71‑1 (MQ=255)
aGTGGGAAAATGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGCCATCGGCAATCGCTGCGCGAACGGt < 1:4897141/71‑1 (MQ=255)
aGTGGGAAAATGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGCCATCGGCAATCGCTGCGCGAACGGt < 1:2591047/71‑1 (MQ=255)
aGTGGGAAAATGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGCCATCGGCAATCGCTGCGCGAACGGt < 1:2687835/71‑1 (MQ=255)
aGTGGGAAAATGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGCCATCGGCAATCGCTGCGCGAACGGt < 1:2932937/71‑1 (MQ=255)
aGTGGGAAAATGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGCCATCGGCAATCGCTGAGCGAACGGt < 1:3705997/71‑1 (MQ=255)
ggAAAATGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGCCATCGGCAATCGCTGCGCGAACGGTCGt < 1:1503741/70‑1 (MQ=255)
ggAAAATGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGCCATCGGCAATCGCTGCGCGAACGGTCGt < 1:4600408/70‑1 (MQ=255)
ggAAAATGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGCCATCGGCAATCGCTGCGCGAACGGTCGt < 1:2530357/70‑1 (MQ=255)
ggAAAATGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGCCATCGGCAATCGCTGCGCGAACGGTCGt < 1:4040647/70‑1 (MQ=255)
ggAAAATGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGCCATCGGCAATCGCTGCGCGAACGGTCGt < 1:1683974/70‑1 (MQ=255)
ggAAAATGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGCCATCGGCAATCGCTGCGCGAACGGTCGt < 1:2109231/70‑1 (MQ=255)
ggAAAATGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGCCATCGGCAATCGCTGCGCGAACGGTCGt < 1:588512/70‑1 (MQ=255)
ggAAAATGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGCCATCGGCAATCGCTGCGCGAACGGTCGt < 1:3626671/70‑1 (MQ=255)
ggAAAATGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGCCATCGGCAATCGCTGCGCGAACGGTCGt < 1:2048374/70‑1 (MQ=255)
gAAAATGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGCCATCGGCAATCGCTGCGCGAACGGTCGt < 1:4212659/69‑1 (MQ=255)
gAAAATGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGCCATCGGCAATCGCTGCGCGAACGGTCGTaa < 1:3816068/71‑1 (MQ=255)
gAAAATGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGCCATCGGCAATCGCTGCGCGAACGGTCGTaa < 1:4353856/71‑1 (MQ=255)
gAAAATGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGCCATCGGCAATCGCTGCGCGAACGGTCGTaa < 1:2406667/71‑1 (MQ=255)
gAAAATGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGCCATCGGCAATCGCTGCGCGAACGGTCGTaa < 1:3327791/71‑1 (MQ=255)
gAAAATGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGCCATCGGCAATCGCTGCGCGAACGGTCGTaa < 1:3039505/71‑1 (MQ=255)
aaaaTGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGCCATCGGCAATCGCTGCGCGAACGGTCGTaa < 1:2383788/70‑1 (MQ=255)
|
ATCAATAGTTGCTTCAGTATGACCGCCACGCGTCAGTACACCACCTGCCTGAGCGCGAAGTGGGAAAACGTGGCCAGGACGATTCAGATCTGACGGTTTTGCGCCATCGGCAATCGCTGCGCGAACGGTCGTAA > minE/2039438‑2039571
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
