Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F28 I3 R1 10 35.2 319432 24.6% 78580 50.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA minE 2,359,192 G→A noncoding (1903/2905 nt) rrlA ← 23S ribosomal RNA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*minE2,359,1920GA100.0% 1499.8 / NA 532noncoding (1903/2905 nt)rrlA23S ribosomal RNA
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (532/0);  total (532/0)

Only 100 of 532 total aligned reads displayed.

CTTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGCG  >  minE/2359165‑2359227
                           |                                   
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATGAAGAGCTTCGCCTTGc   >  1:9659/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTg    >  1:263427/1‑61 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTg    >  1:24852/1‑61 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTg    >  1:281678/1‑61 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTg    >  1:232581/1‑61 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTg    >  1:22233/1‑61 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTg    >  1:289648/1‑61 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTg    >  1:205711/1‑61 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTg    >  1:299914/1‑61 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTg    >  1:18785/1‑61 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTg    >  1:313827/1‑61 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTg    >  1:317404/1‑61 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTg    >  1:173386/1‑61 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTg    >  1:46436/1‑61 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTg    >  1:47419/1‑61 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTg    >  1:147588/1‑61 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTg    >  1:61075/1‑61 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTg    >  1:93707/1‑61 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTg    >  1:75399/1‑61 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:89455/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:76703/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:296879/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:293316/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:78731/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:285289/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:83806/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:282529/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:302286/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:92393/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:277636/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:273273/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:271450/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:27011/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:268444/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:26580/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:251594/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:40587/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:58018/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:62912/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:54010/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:51090/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:64820/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:66879/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:4345/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:42194/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:76178/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:37479/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:33758/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:68872/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:72413/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:73632/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:310875/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:309196/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:306834/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:127171/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:159867/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:156229/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:154616/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:153583/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:151486/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:143181/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:139451/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:135787/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:134054/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:132466/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:130140/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:163459/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:12521/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:122641/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:122354/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:118820/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:115700/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:114463/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:113043/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:108756/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:107119/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:104635/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:207954/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:25607/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:254743/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:100215/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:247843/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:243242/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:23922/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:23458/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:226479/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:220615/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:217165/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:210488/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:260322/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:202935/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:200666/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:198167/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:195801/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:192530/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:184340/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:177364/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:169741/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:167030/1‑62 (MQ=255)
cTTAGGACCGTTATAGTTACGGCCGCCATTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGc   >  1:164982/1‑62 (MQ=255)
                           |                                   
CTTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGCG  >  minE/2359165‑2359227

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A