Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F8 I0 R1
|
57 |
71.7 |
5601774 |
97.7% |
5472933 |
60.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| MC JC |
W3110S.gb |
2,320,795 |
Δ1,336 bp |
100% |
|
insD–[rcsC] |
insD, insC, [rcsC] |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
W3110S.gb |
2320795–2322125 |
2322130 |
6–1336 |
95 [0] |
[0] 95 |
insD–[rcsC] |
insD,insC,[rcsC] |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
W3110S.gb |
= 2320794 | 0 (0.000) | 67 (1.310) |
12/88 |
NT |
100% |
intergenic (‑59/+11) |
rcsC/insD |
hybrid sensory kinase in two‑component regulatory system with RcsB and YojN/IS2 element protein |
| ? | W3110S.gb |
2322131 = |
0 (0.000) | coding (2368/2424 nt) |
rcsC |
hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
GATK/CNVnator alignment
N/A
