Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F28 I2 R2
|
42 |
122.2 |
1899532 |
52.7% |
1001053 |
56.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
1,451,978 |
Δ1 bp |
coding (318/651 nt) |
atoA → |
acetyl‑CoA:acetoacetyl‑CoA transferase, beta subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 1,451,977 | 0 | A | . | 100.0%
| 60.3
/ NA
| 15 | coding (317/651 nt) | atoA | acetyl‑CoA:acetoacetyl‑CoA transferase, beta subunit |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (0/15); total (0/15) |
GCTAATCCGTGGCGGTCATATTGATGCCTGCGTGCTCGGCGGTTTGCAAGTAGACGAAGAAGCAAACCTCGCGAACTGGGTAGTGCCTGGGAAAATGGTGCCCGGTATGGGTGGC > minE/1451918‑1452032
|
gcTAATCCGTGGCGGTCATATTGATGCCTGCGTGCTCGGCGGTTTGCAAGTAGACgaagaa > 1:367059/1‑61 (MQ=255)
gcTAATCCGTGGCGGTCATATTGATGCCTGCGTGCTCGGCGGTTTGCAAGTAGACgaagaa > 1:1647081/1‑61 (MQ=255)
gcTAATCCGTGGCGGTCATATTGATGCCTGCGTGCTCGGCGGTTTGCAAGTAGACgaagaa > 1:1735944/1‑61 (MQ=255)
gcTAATCCGTGGCGGTCATATTGATGCCTGCGTGCTCGGCGGTTTGCAAGTAGACgaagaa > 1:1776283/1‑61 (MQ=255)
gcTAATCCGTGGCGGTCATATTGATGCCTGCGTGCTCGGCGGTTTGCAAGTAGACgaagaa > 1:1793405/1‑61 (MQ=255)
gcTAATCCGTGGCGGTCATATTGATGCCTGCGTGCTCGGCGGTTTGCAAGTAGACgaagaa > 1:1838332/1‑61 (MQ=255)
gcTAATCCGTGGCGGTCATATTGATGCCTGCGTGCTCGGCGGTTTGCAAGTAGACgaagaa > 1:1841850/1‑61 (MQ=255)
gcTAATCCGTGGCGGTCATATTGATGCCTGCGTGCTCGGCGGTTTGCAAGTAGACgaagaa > 1:229979/1‑61 (MQ=255)
gcTAATCCGTGGCGGTCATATTGATGCCTGCGTGCTCGGCGGTTTGCAAGTAGACgaagaa > 1:245162/1‑61 (MQ=255)
gcTAATCCGTGGCGGTCATATTGATGCCTGCGTGCTCGGCGGTTTGCAAGTAGACgaagaa > 1:322212/1‑61 (MQ=255)
gcTAATCCGTGGCGGTCATATTGATGCCTGCGTGCTCGGCGGTTTGCAAGTAGACgaagaa > 1:1736407/1‑61 (MQ=255)
gcTAATCCGTGGCGGTCATATTGATGCCTGCGTGCTCGGCGGTTTGCAAGTAGACgaagaa > 1:42955/1‑61 (MQ=255)
gcTAATCCGTGGCGGTCATATTGATGCCTGCGTGCTCGGCGGTTTGCAAGTAGACgaagaa > 1:437297/1‑61 (MQ=255)
gcTAATCCGTGGCGGTCATATTGATGCCTGCGTGCTCGGCGGTTTGCAAGTAGACgaagaa > 1:518047/1‑61 (MQ=255)
gcTAATCCGTGGCGGTCATATTGATGCCTGCGTGCTCGGCGGTTTGCAAGTAGACgaagaa > 1:522094/1‑61 (MQ=255)
gcTAATCCGTGGCGGTCATATTGATGCCTGCGTGCTCGGCGGTTTGCAAGTAGACgaagaa > 1:641388/1‑61 (MQ=255)
gcTAATCCGTGGCGGTCATATTGATGCCTGCGTGCTCGGCGGTTTGCAAGTAGACgaagaa > 1:810237/1‑61 (MQ=255)
gcTAATCCGTGGCGGTCATATTGATGCCTGCGTGCTCGGCGGTTTGCAAGTAGACgaagaa > 1:811153/1‑61 (MQ=255)
gcTAATCCGTGGCGGTCATATTGATGCCTGCGTGCTCGGCGGTTTGCAAGTAGACgaagaa > 1:860491/1‑61 (MQ=255)
gcTAATCCGTGGCGGTCATATTGATGCCTGCGTGCTCGGCGGTTTGCAAGTAGACgaagaa > 1:1590562/1‑61 (MQ=255)
gcTAATCCGTGGCGGTCATATTGATGCCTGCGTGCTCGGCGGTTTGCAAGTAGACgaagaa > 1:1226955/1‑61 (MQ=255)
gcTAATCCGTGGCGGTCATATTGATGCCTGCGTGCTCGGCGGTTTGCAAGTAGACgaagaa > 1:1231896/1‑61 (MQ=255)
gcTAATCCGTGGCGGTCATATTGATGCCTGCGTGCTCGGCGGTTTGCAAGTAGACgaagaa > 1:154786/1‑61 (MQ=255)
gcTAATCCGTGGCGGTCATATTGATGCCTGCGTGCTCGGCGGTTTGCAAGTAGACgaagaa > 1:1241306/1‑61 (MQ=255)
gcTAATCCGTGGCGGTCATATTGATGCCTGCGTGCTCGGCGGTTTGCAAGTAGACgaagaa > 1:1499585/1‑61 (MQ=255)
gcTAATCCGTGGCGGTCATATTGATGCCTGCGTGCTCGGCGGTTTGCAAGTAGACgaagaa > 1:1469185/1‑61 (MQ=255)
gcTAATCCGTGGCGGTCATATTGATGCCTGCGTGCTCGGCGGTTTGCAAGTAGACgaagaa > 1:1459196/1‑61 (MQ=255)
gcTAATCCGTGGCGGTCATATTGATGCCTGCGTGCTCGGCGGTTTGCAAGTAGACgaagaa > 1:133860/1‑61 (MQ=255)
gcTAATCCGTGGCGGTCATATTGATGCCTGCGTGCTCGGCGGTTTGCAAGTAGACgaagaa > 1:1387974/1‑61 (MQ=255)
gcTAATCCGTGGCGGTCATATTGATGCCTGCGTGCTCGGCGGTTTGCAAGTAGACgaagaa > 1:1436803/1‑61 (MQ=255)
gcTAATCCGTGGCGGTCATATTGATGCCTGCGTGCTCGGCGGTTTGCAAGTAGACgaagaa > 1:1406263/1‑61 (MQ=255)
gcTAATCCGTGGCGGTCATATTGATGCCTGCGTGCTCGGCGGTTTGCAAGTAGACgaagaa > 1:1607830/1‑61 (MQ=255)
gcTAATCCGTGGCGGTCATATTGATGCCTGCGTGCTCGGCGGTTTGCAAGTAGACgaaga > 1:354972/1‑60 (MQ=255)
gACGAAG‑AGCAAACCTCGCGAACTGGGTAGTGCCTGGGAAAATGGTGCCCGGTATGGGTGgc < 1:1392199/62‑1 (MQ=255)
gACGAAG‑AGCAAACCTCGCGAACTGGGTAGTGCCTGGGAAAATGGTGCCCGGTATGGGTGgc < 1:358735/62‑1 (MQ=255)
gACGAAG‑AGCAAACCTCGCGAACTGGGTAGTGCCTGGGAAAATGGTGCCCGGTATGGGTGgc < 1:1868504/62‑1 (MQ=255)
gACGAAG‑AGCAAACCTCGCGAACTGGGTAGTGCCTGGGAAAATGGTGCCCGGTATGGGTGgc < 1:1387264/62‑1 (MQ=255)
gACGAAG‑AGCAAACCTCGCGAACTGGGTAGTGCCTGGGAAAATGGTGCCCGGTATGGGTGgc < 1:1378072/62‑1 (MQ=255)
gACGAAG‑AGCAAACCTCGCGAACTGGGTAGTGCCTGGGAAAATGGTGCCCGGTATGGGTGgc < 1:1445848/62‑1 (MQ=255)
gACGAAG‑AGCAAACCTCGCGAACTGGGTAGTGCCTGGGAAAATGGTGCCCGGTATGGGTGgc < 1:1016325/62‑1 (MQ=255)
gACGAAG‑AGCAAACCTCGCGAACTGGGTAGTGCCTGGGAAAATGGTGCCCGGTATGGGTGgc < 1:1730279/62‑1 (MQ=255)
gACGAAG‑AGCAAACCTCGCGAACTGGGTAGTGCCTGGGAAAATGGTGCCCGGTATGGGTGgc < 1:726458/62‑1 (MQ=255)
gACGAAG‑AGCAAACCTCGCGAACTGGGTAGTGCCTGGGAAAATGGTGCCCGGTATGGGTGgc < 1:78588/62‑1 (MQ=255)
gACGAAG‑AGCAAACCTCGCGAACTGGGTAGTGCCTGGGAAAATGGTGCCCGGTATGGGTGgc < 1:1656667/62‑1 (MQ=255)
gACGAAG‑AGCAAACCTCGCGAACTGGGTAGTGCCTGGGAAAATGGTGCCCGGTATGGGTGgc < 1:1191430/62‑1 (MQ=255)
gACGAAG‑AGCAAACCTCGCGAACTGGGTAGTGCCTGGGAAAATGGTGCCCGGTATGGGTGgc < 1:811780/62‑1 (MQ=255)
gACGAAG‑AGCAAACCTCGCGAACTGGGTAGTGCCTGGGAAAATGGTGCCCGGTATGGGTGgc < 1:856056/62‑1 (MQ=255)
gACGAAG‑AGCAAACCTCGCGAACTGGGTAGTGCCTGGGAAAATGGTGCCCGGTATGGGTGgc < 1:1185071/62‑1 (MQ=255)
|
GCTAATCCGTGGCGGTCATATTGATGCCTGCGTGCTCGGCGGTTTGCAAGTAGACGAAGAAGCAAACCTCGCGAACTGGGTAGTGCCTGGGAAAATGGTGCCCGGTATGGGTGGC > minE/1451918‑1452032
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
