Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F28 I2 R2
|
42 |
122.2 |
1899532 |
52.7% |
1001053 |
56.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
2,335,701 |
A→G |
E29E (GAA→GAG) |
fdoH → |
formate dehydrogenase‑O, Fe‑S subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,335,701 | 0 | A | G | 100.0%
| 98.6
/ NA
| 27 | E29E (GAA→GAG) | fdoH | formate dehydrogenase‑O, Fe‑S subunit |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (27/0); total (27/0) |
CTAACGGTCTGACCCCCGCGCCTCAGGCGCGGGACTTCCAGGAAGAAGTGGCGAAACTCATC > minE/2335655‑2335716
|
cTAACGGTCTGACCCCCGCGCCTCAGGCGCGGGACTTCCAGGAAGAGGTGGCGAAAc > 1:1012612/1‑57 (MQ=255)
cTAACGGTCTGACCCCCGCGCCTCAGGCGCGGGACTTCCAGGAAGAGGTGGCGAAACTCATc > 1:1730402/1‑62 (MQ=255)
cTAACGGTCTGACCCCCGCGCCTCAGGCGCGGGACTTCCAGGAAGAGGTGGCGAAACTCATc > 1:954112/1‑62 (MQ=255)
cTAACGGTCTGACCCCCGCGCCTCAGGCGCGGGACTTCCAGGAAGAGGTGGCGAAACTCATc > 1:934232/1‑62 (MQ=255)
cTAACGGTCTGACCCCCGCGCCTCAGGCGCGGGACTTCCAGGAAGAGGTGGCGAAACTCATc > 1:923747/1‑62 (MQ=255)
cTAACGGTCTGACCCCCGCGCCTCAGGCGCGGGACTTCCAGGAAGAGGTGGCGAAACTCATc > 1:907605/1‑62 (MQ=255)
cTAACGGTCTGACCCCCGCGCCTCAGGCGCGGGACTTCCAGGAAGAGGTGGCGAAACTCATc > 1:898240/1‑62 (MQ=255)
cTAACGGTCTGACCCCCGCGCCTCAGGCGCGGGACTTCCAGGAAGAGGTGGCGAAACTCATc > 1:830481/1‑62 (MQ=255)
cTAACGGTCTGACCCCCGCGCCTCAGGCGCGGGACTTCCAGGAAGAGGTGGCGAAACTCATc > 1:776052/1‑62 (MQ=255)
cTAACGGTCTGACCCCCGCGCCTCAGGCGCGGGACTTCCAGGAAGAGGTGGCGAAACTCATc > 1:309141/1‑62 (MQ=255)
cTAACGGTCTGACCCCCGCGCCTCAGGCGCGGGACTTCCAGGAAGAGGTGGCGAAACTCATc > 1:264233/1‑62 (MQ=255)
cTAACGGTCTGACCCCCGCGCCTCAGGCGCGGGACTTCCAGGAAGAGGTGGCGAAACTCATc > 1:1763381/1‑62 (MQ=255)
cTAACGGTCTGACCCCCGCGCCTCAGGCGCGGGACTTCCAGGAAGAGGTGGCGAAACTCATc > 1:1758337/1‑62 (MQ=255)
cTAACGGTCTGACCCCCGCGCCTCAGGCGCGGGACTTCCAGGAAGAGGTGGCGAAACTCATc > 1:1731024/1‑62 (MQ=255)
cTAACGGTCTGACCCCCGCGCCTCAGGCGCGGGACTTCCAGGAAGAGGTGGCGAAACTCATc > 1:100344/1‑62 (MQ=255)
cTAACGGTCTGACCCCCGCGCCTCAGGCGCGGGACTTCCAGGAAGAGGTGGCGAAACTCATc > 1:1632169/1‑62 (MQ=255)
cTAACGGTCTGACCCCCGCGCCTCAGGCGCGGGACTTCCAGGAAGAGGTGGCGAAACTCATc > 1:1427694/1‑62 (MQ=255)
cTAACGGTCTGACCCCCGCGCCTCAGGCGCGGGACTTCCAGGAAGAGGTGGCGAAACTCATc > 1:142367/1‑62 (MQ=255)
cTAACGGTCTGACCCCCGCGCCTCAGGCGCGGGACTTCCAGGAAGAGGTGGCGAAACTCATc > 1:1364282/1‑62 (MQ=255)
cTAACGGTCTGACCCCCGCGCCTCAGGCGCGGGACTTCCAGGAAGAGGTGGCGAAACTCATc > 1:1363564/1‑62 (MQ=255)
cTAACGGTCTGACCCCCGCGCCTCAGGCGCGGGACTTCCAGGAAGAGGTGGCGAAACTCATc > 1:126480/1‑62 (MQ=255)
cTAACGGTCTGACCCCCGCGCCTCAGGCGCGGGACTTCCAGGAAGAGGTGGCGAAACTCATc > 1:1159724/1‑62 (MQ=255)
cTAACGGTCTGACCCCCGCGCCTCAGGCGCGGGACTTCCAGGAAGAGGTGGCGAAACTCATc > 1:1113644/1‑62 (MQ=255)
cTAACGGTCTGACCCCCGCGCCTCAGGCGCGGGACTTCCAGGAAGAGGTGGCGAAACTCATc > 1:109613/1‑62 (MQ=255)
cTAACGGTCTGACCCCCGCGCCTCAGGCGCGGGACTTCCAGGAAGAGGTGGCGAAACTCATc > 1:1051389/1‑62 (MQ=255)
cTAACGGTCTGACCCCCGCGCCTCAGGCGCGGGACTTCCAGGAAGAGGTGGCGAAACTCATc > 1:1011887/1‑62 (MQ=255)
cTAACGGTCTGACCCCCGCGCCTCAGGAGCGGGACTTCCAGGAAGAGGTGGCGAAACTCATc > 1:340976/1‑62 (MQ=39)
|
CTAACGGTCTGACCCCCGCGCCTCAGGCGCGGGACTTCCAGGAAGAAGTGGCGAAACTCATC > minE/2335655‑2335716
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
