Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F28 I2 R2
|
42 |
122.2 |
1899532 |
52.7% |
1001053 |
56.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
2,687,817 |
+G |
coding (462/1623 nt) |
pck ← |
phosphoenolpyruvate carboxykinase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,687,814 | 1 | . | G | 100.0%
| 102.1
/ NA
| 28 | P155P (CCG→CCC) | pck | phosphoenolpyruvate carboxykinase |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (0/28); total (0/28) |
AGTTCTTCATCGCTC‑GGGCGAATAAACATGTTTTTGACAAAATGCGCCTGCCAGGCCAC > minE/2687800‑2687858
|
acttcttcATCGCTCGGGGCGAATAAACATGTTTTTGACAAAATGCGCCTGCCAGGCCAc < 1:1045325/58‑1 (MQ=255)
aGTTCTTCATCGCTCGGGGCGAATAAACATGTTTTTGACAGAATGCGCCTGCCAGGCCAc < 1:1380402/60‑1 (MQ=255)
aGTTCTTCATCGCTCGGGGCGAATAAACATGTTTTTGACAAAATGCGCCTGCCAGGGCAc < 1:269514/60‑1 (MQ=255)
aGTTCTTCATCGCTCGGGGCGAATAAACATGTTTTTGACAAAATGCGCCTGCCAGGCCAc < 1:1625780/60‑1 (MQ=255)
aGTTCTTCATCGCTCGGGGCGAATAAACATGTTTTTGACAAAATGCGCCTGCCAGGCCAc < 1:762067/60‑1 (MQ=255)
aGTTCTTCATCGCTCGGGGCGAATAAACATGTTTTTGACAAAATGCGCCTGCCAGGCCAc < 1:739528/60‑1 (MQ=255)
aGTTCTTCATCGCTCGGGGCGAATAAACATGTTTTTGACAAAATGCGCCTGCCAGGCCAc < 1:637878/60‑1 (MQ=255)
aGTTCTTCATCGCTCGGGGCGAATAAACATGTTTTTGACAAAATGCGCCTGCCAGGCCAc < 1:474367/60‑1 (MQ=255)
aGTTCTTCATCGCTCGGGGCGAATAAACATGTTTTTGACAAAATGCGCCTGCCAGGCCAc < 1:46412/60‑1 (MQ=255)
aGTTCTTCATCGCTCGGGGCGAATAAACATGTTTTTGACAAAATGCGCCTGCCAGGCCAc < 1:436689/60‑1 (MQ=255)
aGTTCTTCATCGCTCGGGGCGAATAAACATGTTTTTGACAAAATGCGCCTGCCAGGCCAc < 1:262567/60‑1 (MQ=255)
aGTTCTTCATCGCTCGGGGCGAATAAACATGTTTTTGACAAAATGCGCCTGCCAGGCCAc < 1:219003/60‑1 (MQ=255)
aGTTCTTCATCGCTCGGGGCGAATAAACATGTTTTTGACAAAATGCGCCTGCCAGGCCAc < 1:1886179/60‑1 (MQ=255)
aGTTCTTCATCGCTCGGGGCGAATAAACATGTTTTTGACAAAATGCGCCTGCCAGGCCAc < 1:1858171/60‑1 (MQ=255)
aGTTCTTCATCGCTCGGGGCGAATAAACATGTTTTTGACAAAATGCGCCTGCCAGGCCAc < 1:1716351/60‑1 (MQ=255)
aGTTCTTCATCGCTCGGGGCGAATAAACATGTTTTTGACAAAATGCGCCTGCCAGGCCAc < 1:1689874/60‑1 (MQ=255)
aGTTCTTCATCGCTCGGGGCGAATAAACATGTTTTTGACAAAATGCGCCTGCCAGGCCAc < 1:157248/60‑1 (MQ=255)
aGTTCTTCATCGCTCGGGGCGAATAAACATGTTTTTGACAAAATGCGCCTGCCAGGCCAc < 1:1490260/60‑1 (MQ=255)
aGTTCTTCATCGCTCGGGGCGAATAAACATGTTTTTGACAAAATGCGCCTGCCAGGCCAc < 1:141863/60‑1 (MQ=255)
aGTTCTTCATCGCTCGGGGCGAATAAACATGTTTTTGACAAAATGCGCCTGCCAGGCCAc < 1:1407042/60‑1 (MQ=255)
aGTTCTTCATCGCTCGGGGCGAATAAACATGTTTTTGACAAAATGCGCCTGCCAGGCCAc < 1:1388978/60‑1 (MQ=255)
aGTTCTTCATCGCTCGGGGCGAATAAACATGTTTTTGACAAAATGCGCCTGCCAGGCCAc < 1:137182/60‑1 (MQ=255)
aGTTCTTCATCGCTCGGGGCGAATAAACATGTTTTTGACAAAATGCGCCTGCCAGGCCAc < 1:1229351/60‑1 (MQ=255)
aGTTCTTCATCGCTCGGGGCGAATAAACATGTTTTTGACAAAATGCGCCTGCCAGGCCAc < 1:1153283/60‑1 (MQ=255)
aGTTCTTCATCGCTCGGGGCGAATAAACATGTTTTTGACAAAATGCGCCTGCCAGGCCAc < 1:1141487/60‑1 (MQ=255)
aGTTCTTCATCGCTCGGGGCGAATAAACATGTTTTTGACAAAATGCGCCTGCCAGGCCAc < 1:1113741/60‑1 (MQ=255)
aGTTCTTCATCGCTCGGGGCGAATAAACATGTTTTTGACAAAATGCGCCTGCCAGGCCAc < 1:1065742/60‑1 (MQ=255)
gTTCTTCATCGCTCGGGGCGAATAAACATGTTTTTGACAAAATGCGCCTGCCAGGCCAc < 1:1407251/59‑1 (MQ=255)
|
AGTTCTTCATCGCTC‑GGGCGAATAAACATGTTTTTGACAAAATGCGCCTGCCAGGCCAC > minE/2687800‑2687858
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
