Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F28 I2 R1
|
330 |
0.0 |
2544031 |
91.9% |
2337964 |
62.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
4,558,086 |
G→A |
A168A (GCG→GCA) |
uxuB → |
D‑mannonate oxidoreductase, NAD‑binding |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 4,558,086 | 0 | G | A | 100.0%
| 267.4
/ NA
| 78 | A168A (GCG→GCA) | uxuB | D‑mannonate oxidoreductase, NAD‑binding |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (51/27); total (51/27) |
CACGATCTGGAAAACCCGACTGCGCCGAAGTCCGCGATTGGTTACATCGTCGAAGCGTTGCGTCTGCGTCGTGAAAAAGGGTTGAAAGCGTTTACGGTGATGTCCTGCGATA > W3110S.gb/4558030‑4558141
|
cACGATCTGGAAAACCCGACTGCGCCGAAGTCCGCGATTGGTTACATCGTCGAAGCATtgcgtct > 1:51449/1‑65 (MQ=255)
cACGATCTGGAAAACCCGACTGCGCCGAAGTCCGCGATTGGTTACATCGTCGAAGCATtgcgtct > 1:1590301/1‑65 (MQ=255)
cACGATCTGGAAAACCCGACTGCGCCGAAGTCCGCGATTGGTTACATCGTCGAAGCATtgcgtct > 1:559328/1‑65 (MQ=255)
cACGATCTGGAAAACCCGACTGCGCCGAAGTCCGCGATTGGTTACATCGTCGAAGCATtgcgtct > 1:648724/1‑65 (MQ=255)
cACGATCTGGAAAACCCGACTGCGCCGAAGTCCGCGATTGGTTACATCGTCGAAGCATtgcgtct > 1:2209785/1‑65 (MQ=255)
cACGATCTGGAAAACCCGACTGCGCCGAAGTCCGCGATTGGTTACATCGTCGAAGCATtgcgtct > 1:2236566/1‑65 (MQ=255)
cACGATCTGGAAAACCCGACTGCGCCGAAGTCCGCGATTGGTTACATCGTCGAAGCATtgcgtct > 1:1771469/1‑65 (MQ=255)
cACGATCTGGAAAACCCGACTGCGCCGAAGTCCGCGATTGGTTACATCGTCGAAGCATtgcgtct > 1:2119067/1‑65 (MQ=255)
cACGATCTGGAAAACCCGACTGCGCCGAAGTCCGCGATTGGTTACATCGTCGAAGCATtgcgtct > 1:356287/1‑65 (MQ=255)
cACGATCTGGAAAACCCGACTGCGCCGAAGTCCGCGATTGGTTACATCGTCGAAGCATtgcgtct > 1:2353147/1‑65 (MQ=255)
cACGATCTGGAAAACCCGACTGCGCCGAAGTCCGCGATTGGTTACATCGTCGAAGCATtgcgtct > 1:210368/1‑65 (MQ=255)
cACGATCTGGAAAACCCGACTGCGCCGAAGTCCGCGATTGGTTACATCGTCGAAGCATtgcgtct > 1:1289144/1‑65 (MQ=255)
cACGATCTGGAAAACCCGACTGCGCCGAAGTCCGCGATTGGTTACATCGTCGAAGCATtgcgtct > 1:253899/1‑65 (MQ=255)
cACGATCTGGAAAACCCGACTGCGCCGAAGTCCGCGATTGGTTACATCGTCGAAGCATtgcgtct > 1:387361/1‑65 (MQ=255)
cACGATCTGGAAAACCCGACTGCGCCGAAGTCCGCGATTGGTTACATCGTCGAAGCATtgcgtct > 1:1267052/1‑65 (MQ=255)
cACGATCTGGAAAACCCGACTGCGCCGAAGTCCGCGATTGGTTACATCGTCGAAGCATtgcgtct > 1:1967817/1‑65 (MQ=255)
cACGATCTGGAAAACCCGACTGCGCCGAAGTCCGCGATTGGTTACATCGTCGAAGCATtgcgtct > 1:832428/1‑65 (MQ=255)
cACGATCTGGAAAACCCGACTGCGCCGAAGTCCGCGATTGGTTACATCGTCGAAGCATtgcgtct > 1:1016284/1‑65 (MQ=255)
cgATTGGTTACATCGTCGAAGCATTGCGTCTGCGTCGTGATAAAGGGTTGAAAGCGTTTACGGt < 1:1340125/64‑1 (MQ=255)
cgATTGGTTACATCGTCGAAGCATTGCGTCTGCGTCGTGAAAAAGGGTTGAAAGCGTTTACGGt < 1:2085089/64‑1 (MQ=255)
cgATTGGTTACATCGTCGAAGCATTGCGTCTGCGTCGTGAAAAAGGGTTGAAAGCGTTTACGGt < 1:2122041/64‑1 (MQ=255)
cgATTGGTTACATCGTCGAAGCATTGCGTCTGCGTCGTGAAAAAGGGTTGAAAGCGTTTACGGt < 1:185868/64‑1 (MQ=255)
cgATTGGTTACATCGTCGAAGCATTGCGTCTGCGTCGTGAAAAAGGGTTGAAAGCGTTTACGGt < 1:376224/64‑1 (MQ=255)
cgATTGGTTACATCGTCGAAGCATTGCGTCTGCGTCGTGAAAAAGGGTTGAAAGCGTTTACGGt < 1:2138556/64‑1 (MQ=255)
cgATTGGTTACATCGTCGAAGCATTGCGTCTGCGTCGTGAAAAAGGGTTGAAAGCGTTTACGGt < 1:2241446/64‑1 (MQ=255)
cgATTGGTTACATCGTCGAAGCATTGCGTCTGCGTCGTGAAAAAGGGTTGAAAGCGTTTACGGt < 1:225742/64‑1 (MQ=255)
cgATTGGTTACATCGTCGAAGCATTGCGTCTGCGTCGTGAAAAAGGGTTGAAAGCGTTTACGGt < 1:2300219/64‑1 (MQ=255)
cgATTGGTTACATCGTCGAAGCATTGCGTCTGCGTCGTGAAAAAGGGTTGAAAGCGTTTACGGt < 1:336948/64‑1 (MQ=255)
cgATTGGTTACATCGTCGAAGCATTGCGTCTGCGTCGTGAAAAAGGGTTGAAAGCGTTTACGGt < 1:252603/64‑1 (MQ=255)
cgATTGGTTACATCGTCGAAGCATTGCGTCTGCGTCGTGAAAAAGGGTTGAAAGCGTTTACGGt < 1:26448/64‑1 (MQ=255)
cgATTGGTTACATCGTCGAAGCATTGCGTCTGCGTCGTGAAAAAGGGTTGAAAGCGTTTACGGt < 1:288148/64‑1 (MQ=255)
cgATTGGTTACATCGTCGAAGCATTGCGTCTGCGTCGTGAAAAAGGGTTGAAAGCGTTTACGGt < 1:293017/64‑1 (MQ=255)
cgATTGGTTACATCGTCGAAGCATTGCGTCTGCGTCGTGAAAAAGGGTTGAAAGCGTTTACGGt < 1:1270746/64‑1 (MQ=255)
cgATTGGTTACATCGTCGAAGCATTGCGTCTGCGTCGTGAAAAAGGGTTGAAAGCGTTTACGGt < 1:75684/64‑1 (MQ=255)
cgATTGGTTACATCGTCGAAGCATTGCGTCTGCGTCGTGAAAAAGGGTTGAAAGCGTTTACGGt < 1:1812458/64‑1 (MQ=255)
cgATTGGTTACATCGTCGAAGCATTGCGTCTGCGTCGTGAAAAAGGGTTGAAAGCGTTTACGGt < 1:541663/64‑1 (MQ=255)
cgATTGGTTACATCGTCGAAGCATTGCGTCTGCGTCGTGAAAAAGGGTTGAAAGCGTTTACGGt < 1:1600659/64‑1 (MQ=255)
cgATTGGTTACATCGTCGAAGCATTGCGTCTGCGTCGTGAAAAAGGGTTGAAAGCGTTTACGGt < 1:1547207/64‑1 (MQ=255)
cgATTGGTTACATCGTCGAAGCATTGCGTCTGCGTCGTGAAAAAGGGTTGAAAGCGTTTACGGt < 1:138917/64‑1 (MQ=255)
cgATTGGTTACATCGTCGAAGCATTGCGTCTGCGTCGTGAAAAAGGGTTGAAAGCGTTTACGGt < 1:1484120/64‑1 (MQ=255)
cgATTGGTTACATCGTCGAAGCATTGCGTCTGCGTCGTGAAAAAGGGTTGAAAGCGTTTACGGt < 1:650171/64‑1 (MQ=255)
cgATTGGTTACATCGTCGAAGCATTGCGTCTGCGTCGTGAAAAAGGGTTGAAAGCGTTTACGGt < 1:750759/64‑1 (MQ=255)
cgATTGGTTACATCGTCGAAGCATTGCGTCTGCGTCGTGAAAAAGGGTTGAAAGCGTTTACGGt < 1:1448677/64‑1 (MQ=255)
cgATTGGTTACATCGTCGAAGCATTGCGTCTGCGTCGTGAAAAAGGGTTGAAAGCGTTTACGGt < 1:750775/64‑1 (MQ=255)
gATTGGTTACATCGGCGAAGCATTGCGTCTGCGTCGTGAAAAAGGGTTGAAAGCGTTTACGGt < 1:768108/63‑1 (MQ=255)
cgtcgAAGCATTGCGTCTGCGTCGTGAAAAAGGGtt > 1:2194698/1‑36 (MQ=255)
cgtcgAAGCATTGCGTCTGCGTCGTGAAAAAGGGTTGAAAGCGTTTACGGTGATGTCCTGCGa > 1:2305341/1‑63 (MQ=255)
cgtcgAAGCATTGCGTCTGCGTCGTGAAAAAGGGTTGAAAGCGTTTACGGTGATGTCCTGCGAt > 1:2504627/1‑64 (MQ=255)
cgtcgAAGCATTGCGTCTGCGTCGTGAAAAAGGGTTGAAAGCGTTTACGGTGATGTCCTGCGATa > 1:90765/1‑65 (MQ=255)
cgtcgAAGCATTGCGTCTGCGTCGTGAAAAAGGGTTGAAAGCGTTTACGGTGATGTCCTGCGATa > 1:775960/1‑65 (MQ=255)
cgtcgAAGCATTGCGTCTGCGTCGTGAAAAAGGGTTGAAAGCGTTTACGGTGATGTCCTGCGATa > 1:383208/1‑65 (MQ=255)
cgtcgAAGCATTGCGTCTGCGTCGTGAAAAAGGGTTGAAAGCGTTTACGGTGATGTCCTGCGATa > 1:317894/1‑65 (MQ=255)
cgtcgAAGCATTGCGTCTGCGTCGTGAAAAAGGGTTGAAAGCGTTTACGGTGATGTCCTGCGATa > 1:763773/1‑65 (MQ=255)
cgtcgAAGCATTGCGTCTGCGTCGTGAAAAAGGGTTGAAAGCGTTTACGGTGATGTCCTGCGATa > 1:757211/1‑65 (MQ=255)
cgtcgAAGCATTGCGTCTGCGTCGTGAAAAAGGGTTGAAAGCGTTTACGGTGATGTCCTGCGATa > 1:927419/1‑65 (MQ=255)
cgtcgAAGCATTGCGTCTGCGTCGTGAAAAAGGGTTGAAAGCGTTTACGGTGATGTCCTGCGATa > 1:38335/1‑65 (MQ=255)
cgtcgAAGCATTGCGTCTGCGTCGTGAAAAAGGGTTGAAAGCGTTTACGGTGATGTCCTGCGATa > 1:146894/1‑65 (MQ=255)
cgtcgAAGCATTGCGTCTGCGTCGTGAAAAAGGGTTGAAAGCGTTTACGGTGATGTCCTGCGATa > 1:1075625/1‑65 (MQ=255)
cgtcgAAGCATTGCGTCTGCGTCGTGAAAAAGGGTTGAAAGCGTTTACGGTGATGTCCTGCGATa > 1:1086020/1‑65 (MQ=255)
cgtcgAAGCATTGCGTCTGCGTCGTGAAAAAGGGTTGAAAGCGTTTACGGTGATGTCCTGCGATa > 1:1096749/1‑65 (MQ=255)
cgtcgAAGCATTGCGTCTGCGTCGTGAAAAAGGGTTGAAAGCGTTTACGGTGATGTCCTGCGATa > 1:1174116/1‑65 (MQ=255)
cgtcgAAGCATTGCGTCTGCGTCGTGAAAAAGGGTTGAAAGCGTTTACGGTGATGTCCTGCGATa > 1:1281987/1‑65 (MQ=255)
cgtcgAAGCATTGCGTCTGCGTCGTGAAAAAGGGTTGAAAGCGTTTACGGTGATGTCCTGCGATa > 1:1317540/1‑65 (MQ=255)
cgtcgAAGCATTGCGTCTGCGTCGTGAAAAAGGGTTGAAAGCGTTTACGGTGATGTCCTGCGATa > 1:1356473/1‑65 (MQ=255)
cgtcgAAGCATTGCGTCTGCGTCGTGAAAAAGGGTTGAAAGCGTTTACGGTGATGTCCTGCGATa > 1:1391817/1‑65 (MQ=255)
cgtcgAAGCATTGCGTCTGCGTCGTGAAAAAGGGTTGAAAGCGTTTACGGTGATGTCCTGCGATa > 1:1458216/1‑65 (MQ=255)
cgtcgAAGCATTGCGTCTGCGTCGTGAAAAAGGGTTGAAAGCGTTTACGGTGATGTCCTGCGATa > 1:302563/1‑65 (MQ=255)
cgtcgAAGCATTGCGTCTGCGTCGTGAAAAAGGGTTGAAAGCGTTTACGGTGATGTCCTGCGATa > 1:1546568/1‑65 (MQ=255)
cgtcgAAGCATTGCGTCTGCGTCGTGAAAAAGGGTTGAAAGCGTTTACGGTGATGTCCTGCGATa > 1:1648479/1‑65 (MQ=255)
cgtcgAAGCATTGCGTCTGCGTCGTGAAAAAGGGTTGAAAGCGTTTACGGTGATGTCCTGCGATa > 1:1649653/1‑65 (MQ=255)
cgtcgAAGCATTGCGTCTGCGTCGTGAAAAAGGGTTGAAAGCGTTTACGGTGATGTCCTGCGATa > 1:1834902/1‑65 (MQ=255)
cgtcgAAGCATTGCGTCTGCGTCGTGAAAAAGGGTTGAAAGCGTTTACGGTGATGTCCTGCGATa > 1:1862704/1‑65 (MQ=255)
cgtcgAAGCATTGCGTCTGCGTCGTGAAAAAGGGTTGAAAGCGTTTACGGTGATGTCCTGCGATa > 1:1995823/1‑65 (MQ=255)
cgtcgAAGCATTGCGTCTGCGTCGTGAAAAAGGGTTGAAAGCGTTTACGGTGATGTCCTGCGATa > 1:2023251/1‑65 (MQ=255)
cgtcgAAGCATTGCGTCTGCGTCGTGAAAAAGGGTTGAAAGCGTTTACGGTGATGTCCTGCGATa > 1:2130448/1‑65 (MQ=255)
cgtcgAAGCATTGCGTCTGCGTCGTGAAAAAGGGTTGAAAGCGTTTACGGTGATGTCCTGCGATa > 1:2314594/1‑65 (MQ=255)
cgtcgAAGCATTGCGTCTGCGTCGTGAAAAAGGGTTGAAAGCGTTTACGGTGATGTCCTGCGATa > 1:2409354/1‑65 (MQ=255)
cgtcgAAGCATTGCGTCTGCGGCGTGAAAAAGGGTTGAAAGCGTTTACGGTGATGTCCTGCGATa > 1:1375806/1‑65 (MQ=255)
|
CACGATCTGGAAAACCCGACTGCGCCGAAGTCCGCGATTGGTTACATCGTCGAAGCGTTGCGTCTGCGTCGTGAAAAAGGGTTGAAAGCGTTTACGGTGATGTCCTGCGATA > W3110S.gb/4558030‑4558141
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
