Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F3 I0 R1
|
560 |
56.4 |
4650532 |
94.9% |
4413354 |
59.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| MC JC |
W3110S.gb |
4,310,365 |
Δ1,199 bp |
100% |
|
insH–[alsK] |
insH, [alsK] |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
W3110S.gb |
4310365–4311562 |
4311563 |
2–1199 |
56 [0] |
[0] 55 |
insH–[alsK] |
insH,[alsK] |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
W3110S.gb |
= 4310364 | 0 (0.000) | 39 (0.930) |
30/88 |
NT |
100% |
intergenic (‑286/‑69) |
yjcS/insH |
predicted alkyl sulfatase/IS5 element protein |
| ? | W3110S.gb |
4311564 = |
0 (0.000) | coding (916/1029 nt) |
alsK |
D‑allose kinase |
GATK/CNVnator alignment
N/A
