Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F28 I2 R2
|
356 |
55.1 |
4139924 |
95.4% |
3949487 |
63.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
827,597 |
C→T |
P26P (CCG→CCA) |
ybhS ← |
predicted transporter subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 827,597 | 0 | C | T | 100.0%
| 186.9
/ NA
| 58 | P26P (CCG→CCA) | ybhS | predicted transporter subunit |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (34/24); total (34/24) |
GTAACCAAAAATAAACAGCAGTAGCAGCGGGATCACTACCGCAATCAGCCAGCTACTCGGATCGCGAACGATCTGCCGCGTCTCTTTAACGCACAGCGCCCGTACGCGACGCCAGGACAGG > W3110S.gb/827540‑827660
|
gTAACCAAAAATAAACAGCAGTAGCAGCGGGATCACTACCGCAATCAGCCAGCTACTTGGATCGCGAACGa > 1:347230/1‑71 (MQ=255)
gTAACCAAAAATAAACAGCAGTAGCAGCGGGATCACTACCGCAATCAGCCAGCTACTTGGATCGCGAACGa > 1:825842/1‑71 (MQ=255)
tAACCAAAAATAAACAGCAGTAGCAGCGGGATCACTACCGCAATCAGCCAGCTACTTGGa < 1:739322/60‑1 (MQ=255)
tAACCAAAAATAAACAGCAGTAGCAGCGGGATCACTACCGCAATCAGCCAGCTACTTGGa < 1:2227265/60‑1 (MQ=255)
tAACCAAAAATAAACAGCAGTAGCAGCGGGATCACTACCGCAATCAGCCAGCTACTTGGa < 1:3015348/60‑1 (MQ=255)
tAACCAAAAATAAACAGCAGTAGCAGCGGGATCACTACCGCAATCAGCCAGCTACTTGGa < 1:2148746/60‑1 (MQ=255)
tAACCAAAAATAAACAGCAGTAGCAGCGGGATCACTACCGCAATCAGCCAGCTACTTGGa < 1:2735025/60‑1 (MQ=255)
tAACCAAAAATAAACAGCAGTAGCAGCGGGATCACTACCGCAATCAGCCAGCTACTTGGa < 1:2156615/60‑1 (MQ=255)
aCCAAAAATAAACAGCAGTAGCAGCGGGATCACTACCGCAATCAGCCAGCTACTTGGATCGCGAACGATCt > 1:2530928/1‑71 (MQ=255)
aCCAAAAATAAACAGCAGTAGCAGCGGGATCACTACCGCAATCAGCCAGCTACTTGGATCGCGAACGATCt > 1:2695609/1‑71 (MQ=255)
aCCAAAAATAAACAGCAGTAGCAGCGGGATCACTACCGCAATCAGCCAGCTACTTGGATCGCGAACGATCt > 1:1957976/1‑71 (MQ=255)
aCCAAAAATAAACAGCAGTAGCAGCGGGATCACTACCGCAATCAGCCAGCTACTTGGATCGCGAACGATCt > 1:1232792/1‑71 (MQ=255)
gTAGCAGCGGGATCACTACCGCAATCAGCCAGCTACTTGGATCGCGAACGATCTGCCGCGTCTCTTTAACg < 1:4032529/71‑1 (MQ=255)
gTAGCAGCGGGATCACTACCGCAATCAGCCAGCTACTTGGATCGCGAACGATCTGCCGCGTCTCTTTAACg < 1:698299/71‑1 (MQ=255)
gcagcGGGATCACTACCGCAATCAGCCAGCTACTTGGATCGCGa < 1:3589836/44‑1 (MQ=255)
gcagcGGGATCACTACCGCAATCAGCCAGCTACTTGGATCGCGAACGATCTGCCGCGTCTCTTTAACGca > 1:1827415/1‑70 (MQ=255)
agcGGGATCACTACCGCAATCAGCCAGCTACTTGGATCGCGAAc > 1:2457498/1‑44 (MQ=255)
agcGGGATCACTACCGCAATCAGCCAGCTACTTGGATCGCGAAc > 1:384793/1‑44 (MQ=255)
agcGGGATCACTACCGCAATCAGCCAGCTACTTGGATCGCGAAc > 1:1886203/1‑44 (MQ=255)
agcGGGATCACTACCGCAATCAGCCAGCTACTTGGATCGCGAAc > 1:3702428/1‑44 (MQ=255)
agcGGGATCACTACCGCAATCAGCCAGCTACTTGGATCGCGAAc > 1:1694416/1‑44 (MQ=255)
agcGGGATCACTACCGCAATCAGCCAGCTACTTGGATCGCGAAc > 1:3019900/1‑44 (MQ=255)
ccgATCACTACCGCAATCAGCCAGCTACTTGGATCGCGAACGATCTGCCGCGTCTCTTTAACGCACAgcg < 1:3413156/68‑1 (MQ=255)
ccgATCACTACCGCAATCAGCCAGCTACTTGGATCGCGAACGATCTGCCGCGTCTCTTTAACGCACAgcg < 1:3987182/68‑1 (MQ=255)
ccgATCACTACCGCAATCAGCCAGCTACTTGGATCGCGAACGATCTGCCGCGTCTCTTTAACGCACAgcg < 1:1830782/68‑1 (MQ=255)
ccgATCACTACCGCAATCAGCCAGCTACTTGGATCGCGAACGATCTGCCGCGTCTCTTTAACGCACAgcg < 1:1402336/68‑1 (MQ=255)
ccgATCACTACCGCAATCAGCCAGCTACTTGGATCGCGAACGATCTGCCGCGTCTCTTTAACGCACAgcg < 1:1171170/68‑1 (MQ=255)
cTACCGCAATCAGCCAGCTACTTGGATCGCGAACg < 1:200885/35‑1 (MQ=255)
aCCGCAATCAGCCAGCTACTTGGATCGCGAACGATCTGCCGCGTCTCTTTAACGCACAGCGCCCGTAcgc > 1:1968858/1‑70 (MQ=255)
aCCGCAATCAGCCAGCTACTTGGATCGCGAACGATCTGCCGCGTCTCTTTAACGCACAGCGCCCGTAcgc > 1:1756130/1‑70 (MQ=255)
aCCGCAATCAGCCAGCTACTTGGATCGCGAACGATCTGCCGCGTCTCTTTAACGCACAGCGCCCGTAcgc > 1:1547193/1‑70 (MQ=255)
aCCGCAATCAGCCAGCTACTTGGATCGCGAACGATCTGCCGCGTCTCTTTAACGCACAGCGCCCGTAcgc > 1:2940001/1‑70 (MQ=255)
aCCGCAATCAGCCAGCTACTTGGATCGCGAACGATCTGCCGCGTCTCTTTAACGCACAGCGCCCGTAcgc > 1:3520801/1‑70 (MQ=255)
aCCGCAATCAGCCAGCTACTTGGATCGCGAACGATCTGCCGCGTCTCTTTAACGCACAGCGCCCGTAcgc > 1:3118933/1‑70 (MQ=255)
cctcAATCAGCCAGCTACTTGGATCGCGAACGATCTGCCGCGTCTCTTTAACGCACAGCGCCCGTAcgc < 1:2241699/66‑1 (MQ=255)
ccGCAATCAGCCAGCTACTTGGATCGCGAACGATCTGCCGCGTCTCTTTAACGCACAGCGCCCGTAcgc < 1:377667/69‑1 (MQ=255)
ccGCAATCAGCCAGCTACTTGGATCGCGAACGATCTGCCGCGTCTCTTTAACGCACAGCGCCCGTAcgc < 1:718534/69‑1 (MQ=255)
ccGCAATCAGCCAGCTACTTGGATCGCGAACGATCTGCCGCGTCTCTTTAACGCACAGCGCCCGTAcgc < 1:2754638/69‑1 (MQ=255)
ccGCAATCAGCCAGCTACTTGGATCGCGAACGATCTGCCGCGTCTCTTTAACGCACAGCGCCCGTAcgc < 1:1217346/69‑1 (MQ=255)
ccGCAATCAGCCAGCTACTTGGATCGCGAACGATCTGCCGCGTCTCTTTAACGCACAGCGCCCGTAcgc < 1:174303/69‑1 (MQ=255)
ccGCAATCAGCCAGCTACTTGGATCGCGAACGATCTGCCGCGTCTCTTTAACGCACAGCCCCCGTAcgc < 1:2496256/69‑1 (MQ=255)
cagccagcTACTTGGATCGCGAACGATCTGCCGCGtc > 1:3297456/1‑37 (MQ=255)
cagccagcTACTTGGATCGCGAACGATCTGCCGCGTCTCTTTAACGCACAGCGCCCGTACGCGACGCcag > 1:3235277/1‑70 (MQ=255)
cagccagcTACTTGGATCGCGAACGATCTGCCGCGTCTCTTTAACGCACAGCGCCCGTACGCGACGCcag > 1:2792771/1‑70 (MQ=255)
cagccagcTACTTGGATCGCGAACGATCTGCCGCGTCTCTTTAACGCACAGCGCCCGTACGCGACGCca > 1:1384106/1‑69 (MQ=255)
ccagcTACTTGGATCGCGAACGATCTGCCGCGTCTCTTTAACGCACAGCGCCCGTACGCGACGCcagga > 1:3881924/1‑69 (MQ=255)
ccagcTACTTGGATCGCGAACGATCTGCCGCGTCTCTTTAACGCACAGCGCCCGTACGCGACGCcagga > 1:920344/1‑69 (MQ=255)
ccagcTACTTGGATCGCGAACGATCTGCCGCGTCTCTTTAACGCACAGCGCCCGTACGCGACGCcagga > 1:1489307/1‑69 (MQ=255)
ccagcTACTTGGATCGCGAACGATCTGCCGCGTCTCTTTAACGCACAGCGCCCGTACGCGACGCcagga > 1:160267/1‑69 (MQ=255)
ccagcTACTTGGATCGCGAACGATCTGCCGCGTCTCTTTAACGCACAGCGCCCGTACGCGACGCcagga > 1:2342743/1‑69 (MQ=255)
ccagcTACTTGGATCGCGAACGATCTGCCGCGTCTCTTTAACGCACAGCGCCCGTACGCGACGCcagga > 1:1075469/1‑69 (MQ=255)
ccagcTACTTGGATCGCGAACGATCTGCCGCGTCTCTTTAACGCACAGCGCCCGTACGCGACGCcagga > 1:3532475/1‑69 (MQ=255)
ccagcTACTTGGATCGCGAACGATCTGCCGCGTCTCTTTAACGCACAGCGCCCGTACGCGACGCcagga > 1:2949721/1‑69 (MQ=255)
ccagcTACTTGGATCGCGAACGATCTGCCGCGTCTCTTTAACGCACAGCGCCCGTACGCGACGCcagga > 1:3195591/1‑69 (MQ=255)
ccagcTACTTGGATCGCGAACGATCTGCCGCGTCTCTTTAACGCACAGCGCCCGTACGCGACGCcagga > 1:3303737/1‑69 (MQ=255)
ccagcTACTTGGATCGCGAACGATCTGCCGCGTCTCTTTAACGCACAGCGCCCGTACGCGAAGCcagga > 1:2160880/1‑69 (MQ=255)
agcTACTTGGATCGCGAACGATCTGCCGCGTCTCTTTAACGCACAGCGCCCGTACGCGACGCcaggacagg < 1:4074071/71‑1 (MQ=255)
agcTACTTGGATCGCGAACGATCTGCCGCGTCTCTTTAACGCACAGCGCCCGTACGCGACGCcaggacagg < 1:729553/71‑1 (MQ=255)
|
GTAACCAAAAATAAACAGCAGTAGCAGCGGGATCACTACCGCAATCAGCCAGCTACTCGGATCGCGAACGATCTGCCGCGTCTCTTTAACGCACAGCGCCCGTACGCGACGCCAGGACAGG > W3110S.gb/827540‑827660
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
