Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F28 I3 R2
|
122 |
64.1 |
3058059 |
97.6% |
2984665 |
63.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
798,949 |
C→T |
M214I (ATG→ATA) |
treA ← |
periplasmic trehalase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 798,949 | 0 | C | T | 100.0%
| 163.9
/ NA
| 57 | M214I (ATG→ATA) | treA | periplasmic trehalase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (28/29); total (28/29) |
TCTTTTTGCATTTGCGGCAGGTATTGCTTCAACGCGGCATCGCCTTCATGCTGCGCCAGTAACTCTACCATCAGGGCAAAGAAGGGCGGTTGCGAGCGGCTTAAATAGTAACTGCGGTTGCCGTTGGGAATATGA > minE/798881‑799015
|
tCTTTTTGCATTTGCGGCAGGTATTGCTTCAACGCGGCATCGCCTTCATGCTGCGCCAGTAACTCTACTAt > 1:2920064/1‑71 (MQ=255)
cTTTTTGCATTTGCGGCAGGTATTGCTTCAACGCGGCATCGCCTTCATGCTGCGCCAGTAACTCTACTAt < 1:744440/70‑1 (MQ=255)
cTTTTTGCATTTGCGGCAGGTATTGCTTCAACGCGGCATCGCCTTCATGCTGCGCCAGTAACTCTACTAt > 1:535859/1‑70 (MQ=255)
tttttGCATTTGCGGCAGGTATTGCTTCAACGCGGCATCGCCTTCATGCTGCGCCAGTAACTCTACTAt > 1:1346239/1‑69 (MQ=255)
tttttGCATTTGCGGCAGGTATTGCTTCAACGCGGCATCGCCTTCATGCTGCGCCAGTAACTCTACTAt < 1:1773269/69‑1 (MQ=255)
tttGCATTTGCGGCAGGTATTGCTTCAACGCGGCATCGCCTTCATGCTGCGCCAGTAACTCTACTATc < 1:1143520/68‑1 (MQ=255)
tttGCATTTGCGGCAGGTATTGCTTCAACGCGGCATCGCCTTCATGCTGCGCCAGTAACTCTACTATCAgg > 1:2563085/1‑71 (MQ=255)
aTTTGCGGCAGGTATTGCTTGAACGCGGCATCGCCTTCATGCTGCGCCAGTAACTCTACTATCAGGGCaaa < 1:1779296/71‑1 (MQ=255)
aTTTGCGGCAGGTATTGCTTCAACGCGGCATCGCCTTCATGCTGCGCCAGTAACTCTACTATCAGGGCa > 1:689471/1‑69 (MQ=255)
tttGCGGCAGGTATTGCTTCAACGCGGCATCGCCTTCATGCTGCGCCAGTAACTCTACTATCAGGGCAaag < 1:2872456/71‑1 (MQ=255)
tGCGGCAGGTATTGCTTCAACGCGGCATCGCCTTCATGCTGCGCCAGTAACTCTACTATCAGGGCAaag > 1:714812/1‑69 (MQ=255)
tGCGGCAGGTATTGCTTCAACGCGGCATCGCCTTCATGCTGCGCCAGTAACTCTACTATCAGGGCAaag > 1:2908026/1‑69 (MQ=255)
cGGCAGGTATTGCTTCAACGCGGCATCGCCTTCATGCTGCGCCAGTAACTCTACTATCAGGGCAAAGAAgg < 1:695571/71‑1 (MQ=255)
cGGCAGGTATTGCTTCAACGCGGCATCGCCTTCATGCTGCGCCAGTAACTCTACTATCAGGGCAAAGAAgg < 1:2862191/71‑1 (MQ=255)
tATTGCTTCAACGCGGCATCGCCTTCATGCTGCGCCAGTAACTCTACTATCAGGGCAaagaag < 1:28879/63‑1 (MQ=255)
aTTGCTTCAACGCGGCATCGCCTTCATGCTGCGCCAGTAACTCTACTATCAGGGCAaag > 1:913127/1‑59 (MQ=255)
aTTGCTTCAACGCGGCATCGCCTTCATGCTGCGCCAGTAACTCTACTATCAGGGCAAAGAAGGGCGGTTGc > 1:1789109/1‑71 (MQ=255)
ttGCTTCAATGCGGCATCGCCTTCATGCTGCGCCAGTAACTCTACTATCAGGGCAAAGAAGGGCGGTTGCg < 1:2445896/71‑1 (MQ=255)
gCTTCAACGCGGCATCGCCTTCATGCTGCGCCAGTAACTCTACTATCAGGGCAAAGAAGGGCGGTTGCGAg > 1:1682802/1‑71 (MQ=255)
ttCAACGCGGCATCGCCTTCATGCTGCGCCAGTAACTCTACTATCAGGGCAaagaag < 1:691499/57‑1 (MQ=255)
ttCAACGCGGCATCGCCTTCATGCTGCGCCAGTAACTCTACTATCAGGGCAAAGAAGGGCGGTTGCg < 1:1732338/67‑1 (MQ=255)
ttCAACGCGGCATCGCCTTCATGCTGCGCCAGTAACTCTACTATCAGGGCAAAGAAGGGCGGTTGCGAGCg > 1:432470/1‑71 (MQ=255)
ttCAACGCGGCATCGCCTTCATGCTGCGCCAGTAACTCTACTATCAGGGCAAAGAAGGGCGGTTGCGAGCg > 1:161083/1‑71 (MQ=255)
tCAACGCGGCATCGCCTTCATGCTGCGCCAGTAACTCTACTATCAGGGCAAAGAAGGGCGGtt < 1:1596911/63‑1 (MQ=255)
cAACGCGGCATCGCCTTCATGCTGCGCCAGTAACTCTACTATCAGGGCAAAGAAGGGCGGTTGCGAGCGGc > 1:139052/1‑71 (MQ=255)
aaCGCGGCATCGCCTTCATGCTGCGCCAGTAACTCTACTATCAGGGCAAAGAAGGGCGGTTGCGAGCGGCt > 1:1897303/1‑71 (MQ=255)
aCGCGGCATCGCCTTCATGCTGCGCCAGTAACTCTACTATCAGGGCAAAGAAGGGCg < 1:579679/57‑1 (MQ=255)
gcgGCATCGCCTTCATGCTGCGCCAGTAACTCTACTATCAGGGCAAAGAAGGGCg < 1:233216/55‑1 (MQ=255)
gcgGCATCGCCTTCATGCTGCGCCAGTAACTCTACTATCAGGGCAAAGAAGGGCg < 1:122578/55‑1 (MQ=255)
gcgGCATCGCCTTCATGCTGCGCCAGTAACTCTACTATCAGGGCAAAGAAGGGCGCTTGCGAGCGGCTTa > 1:662891/1‑70 (MQ=255)
cgGCATCGCCTTCATGCTGCGCCAGTAACTCTACTATCAGGGCAAAGAAGGGCGGTTGCGAGCGTCTTaaa < 1:1020930/71‑1 (MQ=255)
cgGCATCGCCTTCATGCTGCGCCAGTAACTCTACTATCAGGGCAAAGAAGGGCGGTTGCGAGCGGCTTaaa < 1:2835425/71‑1 (MQ=255)
ggCATCGCCTTCATGCTGCGCCAGTAACTCTACTATCAGGGCAAAGAAGAGCGGTTGCGAGCGGCTTaaa > 1:1371751/1‑70 (MQ=255)
aTCGCCTTCATGCTGCGCCAGTAACTCTACTATCAGGGCAAAGAAGGGCGGTTGCGAGCGGCTTTAATAGt < 1:4293/71‑1 (MQ=255)
aTCCCCTTCATGCTGCGCCAGTAACTCTACTATCAGGGCAaagaa < 1:736753/45‑1 (MQ=255)
tCGCCTTCATGCTGCGCCAGTAACTCTACTATCAGGGCAaag < 1:684828/42‑1 (MQ=255)
cGCCTTCATGCTGCGCCAGTAACTCTACTATCAGGGCAaag < 1:208803/41‑1 (MQ=255)
cGCCTTCATGCTGCGCCAGTAACTCTACTATCAGGGCAaag < 1:1514597/41‑1 (MQ=255)
cGCCTTCATGCTGCGCCAGTAACTCTACTATCAGGGCAAAGAAGGGCGGTTGCGAGCGGCTTAAATAGTaa > 1:2216305/1‑71 (MQ=255)
gCCTTCATGCTGCGCCAGTAACTCTACTGTCAGGGCAAAGAAGGGCGGTTGCGAGCGGCTTAAATAGTaa < 1:2075664/70‑1 (MQ=255)
gCCTTCATGCTGCGCCAGTAACTCTACTATCAGGGCAAAGAAGGGCGGTTGCGAGCGGCTTAAATAGTAAc > 1:1998568/1‑71 (MQ=255)
cTTCATGCTGCGCCAGTAACTCTACTATCAGGGCAAAGAAGGGCGGtttc > 1:2488433/1‑48 (MQ=255)
cATGCTGCGCCAGTAACTCTACTATCAGGGCAAAGAAGGGCGGt > 1:319140/1‑44 (MQ=255)
cATGCTGCGCCAGTAACTCTACTATCAGGGCAAAGAAGGGCGGt > 1:2305478/1‑44 (MQ=255)
ctgcGCCAGTAACTCTACTATCAGGGCAAAGAAGGGCGGTTGCGAGCgg > 1:1721021/1‑49 (MQ=255)
ctgcGCCAGTAACTCTACTATCAGGGCAAAGAAGGGCGGTTGCGAGCGGCTTAAATAGTaa > 1:1562831/1‑61 (MQ=255)
cgcCAGTAACTCTACTATCAGGGCAAAGAAGGGCGGTTGCGAGCGGCTTAAATAGTAACTGCGGTTGCCGt < 1:2538757/71‑1 (MQ=255)
ccAGTAACTCTACTATCAGGGCAAAGAAGGGCGGTTGCGAGCGGCTTAAATa > 1:2602138/1‑52 (MQ=255)
aGTAACTCTACTATCAGGGCAAAGAAGGGCGGTTGCGAGCGGCTTAAATAGTAACTGCGGTTGCCGTTggg < 1:570269/71‑1 (MQ=255)
gTAACTCTACTATCAGGGCAAAGAAGGGCGGTTGCGAGCGGCTTAAATAGTAACTGCGGTTGCCGTTggg > 1:1363671/1‑70 (MQ=255)
gTAACTCTACTATCAGGGCAAAGAAGGGCGGTTGCGAGCGGCTTAAATAGTAACTGCGGTTGCCGTTGGGa < 1:305344/71‑1 (MQ=255)
gTAACTCTACTATCAGGGCAAAGAAGGGCGGTTGCGAGCGGCTTAAATAGTAACTGCGGTTGCCGTTGGGa < 1:613395/71‑1 (MQ=255)
gTAACTCTACTATCAGGGCAAAGAAGGGCGGTTGCGAGCGGCTTAAATAGTAACTGCGGTTGCCGTTGGGa < 1:1904082/71‑1 (MQ=255)
tAACTCTACTATCAGGGCAAAGAAGGGCGGTTGCGAGCGGCTTAAATAGTAACTGCGGTTGc < 1:2595292/62‑1 (MQ=255)
tAACTCTACTATCAGGGCAAAGAAGGGCGGTTGCGAGCGGCTTAAATAGTAACTGCGGTTGCCGTTGGGaa > 1:1022819/1‑71 (MQ=255)
tAACTCTACTATCAGGGCAAAGAAGGGCGGTTGCGAGCGGCTTAAATAGTAACTGCGGTTGCCGTTGGGaa > 1:895210/1‑71 (MQ=255)
tctACTATCAGGGCAAAGAAGGGCGGTTGCGAGCGGCTTAAATAGTAACTGCGGTTGCCGTTgg > 1:1412777/1‑64 (MQ=255)
ctactaTCAGGGCAAAGAAGGGCGGTTGCGAGCGGCTTAAAAAGTAACTGCGGTTGCCGTTGGGAATATGa > 1:918833/1‑71 (MQ=255)
|
TCTTTTTGCATTTGCGGCAGGTATTGCTTCAACGCGGCATCGCCTTCATGCTGCGCCAGTAACTCTACCATCAGGGCAAAGAAGGGCGGTTGCGAGCGGCTTAAATAGTAACTGCGGTTGCCGTTGGGAATATGA > minE/798881‑799015
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
