Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F28 I3 R1
|
178 |
99.0 |
1887089 |
95.3% |
1798395 |
63.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
4,544,610 |
T→C |
intergenic (‑427/‑1029) |
yjhA ← / → fimB |
N‑acetylnuraminic acid outer membrane channel protein/tyrosine recombinase/inversion of on/off regulator of fimA |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 4,544,610 | 0 | T | C | 100.0%
| 48.2
/ NA
| 14 | intergenic (‑427/‑1029) | yjhA/fimB | N‑acetylnuraminic acid outer membrane channel protein/tyrosine recombinase/inversion of on/off regulator of fimA |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (14/0); total (14/0) |
TGACTATCTTGGTGCACCTTTATACCTGTTATACCAGATCAAAAATCACGCAATCCATACAACAA > W3110S.gb/4544590‑4544654
|
tGACTATCTTGGTGCACCTTCATACCTGTTATACCAGATCAAAAATCACGCAATCCATacaaca > 1:1415422/1‑64 (MQ=255)
tGACTATCTTGGTGCACCTTCATACCTGTTATACCAGATCAAAAATCACGCAATCCATAcaacaa > 1:1048744/1‑65 (MQ=255)
tGACTATCTTGGTGCACCTTCATACCTGTTATACCAGATCAAAAATCACGCAATCCATAcaacaa > 1:126688/1‑65 (MQ=255)
tGACTATCTTGGTGCACCTTCATACCTGTTATACCAGATCAAAAATCACGCAATCCATAcaacaa > 1:1444651/1‑65 (MQ=255)
tGACTATCTTGGTGCACCTTCATACCTGTTATACCAGATCAAAAATCACGCAATCCATAcaacaa > 1:1496059/1‑65 (MQ=255)
tGACTATCTTGGTGCACCTTCATACCTGTTATACCAGATCAAAAATCACGCAATCCATAcaacaa > 1:1555376/1‑65 (MQ=255)
tGACTATCTTGGTGCACCTTCATACCTGTTATACCAGATCAAAAATCACGCAATCCATAcaacaa > 1:1641010/1‑65 (MQ=255)
tGACTATCTTGGTGCACCTTCATACCTGTTATACCAGATCAAAAATCACGCAATCCATAcaacaa > 1:1823853/1‑65 (MQ=255)
tGACTATCTTGGTGCACCTTCATACCTGTTATACCAGATCAAAAATCACGCAATCCATAcaacaa > 1:264515/1‑65 (MQ=255)
tGACTATCTTGGTGCACCTTCATACCTGTTATACCAGATCAAAAATCACGCAATCCATAcaacaa > 1:656803/1‑65 (MQ=255)
tGACTATCTTGGTGCACCTTCATACCTGTTATACCAGATCAAAAATCACGCAATCCATAcaacaa > 1:696922/1‑65 (MQ=255)
tGACTATCTTGGTGCACCTTCATACCTGTTATACCAGATCAAAAATCACGCAATCCATAcaacaa > 1:715102/1‑65 (MQ=255)
tGACTATCTTGGTGCACCTTCATACCTGTTATACCAGATCAAAAATCACGCAATCCATAcaacaa > 1:834623/1‑65 (MQ=255)
tGACTATCTTGGTGCACCTTCATACCTGTTATACCAGATCAAAAATCACGCAATCCATAcaacaa > 1:928531/1‑65 (MQ=255)
|
TGACTATCTTGGTGCACCTTTATACCTGTTATACCAGATCAAAAATCACGCAATCCATACAACAA > W3110S.gb/4544590‑4544654
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
