Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F28 I1 R1
|
354 |
41.7 |
3110465 |
93.1% |
2895842 |
61.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
4,549,754 |
G→A |
intergenic (+43/‑24) |
fimC → / → fimD |
chaperone, periplasmic/outer membrane usher protein, type 1 fimbrial synthesis |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 4,549,754 | 0 | G | A | 100.0%
| 148.2
/ NA
| 43 | intergenic (+43/‑24) | fimC/fimD | chaperone, periplasmic/outer membrane usher protein, type 1 fimbrial synthesis |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (0/43); total (0/43) |
ATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACA > W3110S.gb/4549708‑4549818
|
aTAACGCTGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCAGGTGATTTTAAGCCggag < 1:2439381/65‑1 (MQ=255)
aTAACGCAGGGGTAATTTTTCGCCTGAATAAAAAGAATTGACTGCCAGGTGATTTTAAGCCggag < 1:2862259/65‑1 (MQ=255)
aTAACGCAGGGGGAATTTTTCGCCTGAATAAAAGGAATTGACTGCCAGGTGATTTTAAGCCggag < 1:206288/65‑1 (MQ=255)
aTAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCAGGTGATTTTAAGCCggag < 1:2866696/65‑1 (MQ=255)
aTAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCAGGTGATTTTAAGCCggag < 1:2174198/65‑1 (MQ=255)
aTAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCAGGTGATTTTAAGCCggag < 1:2202310/65‑1 (MQ=255)
aTAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCAGGTGATTTTAAGCCggag < 1:2365503/65‑1 (MQ=255)
aTAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCAGGTGATTTTAAGCCggag < 1:2385781/65‑1 (MQ=255)
aTAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCAGGTGATTTTAAGCCggag < 1:2844646/65‑1 (MQ=255)
aTAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCAGGTGATTTTAAGCCggag < 1:10874/65‑1 (MQ=255)
aTAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCAGGTGATTTTAAGCCggag < 1:3011581/65‑1 (MQ=255)
aTAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCAGGTGATTTTAAGCCggag < 1:3073632/65‑1 (MQ=255)
aTAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCAGGTGATTTTAAGCCggag < 1:520878/65‑1 (MQ=255)
aTAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCAGGTGATTTTAAGCCggag < 1:677686/65‑1 (MQ=255)
aTAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCAGGTGATTTTAAGCCggag < 1:718429/65‑1 (MQ=255)
aTAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCAGGTGATTTTAAGCCggag < 1:759115/65‑1 (MQ=255)
aTAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCAGGTGATTTTAAGCCggag < 1:807972/65‑1 (MQ=255)
aTAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCAGGTGATTTTAAGCCggag < 1:212162/65‑1 (MQ=255)
aTAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCAGGTGATTTTAAGCCggag < 1:1038403/65‑1 (MQ=255)
aTAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCAGGTGATTTTAAGCCggag < 1:1226270/65‑1 (MQ=255)
aTAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCAGGTGATTTTAAGCCggag < 1:1325690/65‑1 (MQ=255)
aTAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCAGGTGATTTTAAGCCggag < 1:1576338/65‑1 (MQ=255)
aTAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCAGGTGATTTTAAGCCggag < 1:1597487/65‑1 (MQ=255)
aTAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCAGGTGATTTTAAGCCggag < 1:1630984/65‑1 (MQ=255)
aTAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCAGGTGATTTTAAGCCggag < 1:1682762/65‑1 (MQ=255)
aTAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCAGGTGATTTTAAGCCggag < 1:1847883/65‑1 (MQ=255)
aTAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCAGGTGATTTTAAGCCagag < 1:1579718/65‑1 (MQ=255)
aTAACGCAGGGGAAATTTTTCGCCTGAATAAAAAGAATTGACTGCCAGGTGATTTTAAGCCggag < 1:606826/65‑1 (MQ=255)
tAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCAGGTGATTTTAAGCCggag < 1:1225315/64‑1 (MQ=255)
gggggAATTTTTCGCCTGAATAAAAAGAATTGACTGCCAGGTGATTTTAAGCCggag < 1:1136940/57‑1 (MQ=255)
gggAATTTTTCGCCTGAATAAAAAGAATTGACTGCCAGGTGATTTTAAGCCggag < 1:977125/55‑1 (MQ=255)
tAAAAAGAATTGACTGCCAGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGa < 1:36559/63‑1 (MQ=255)
tAAAAAGAATTGACTGCCAGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGa < 1:2683228/63‑1 (MQ=255)
tAAAAAGAATTGACTGCCAGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGa < 1:2884905/63‑1 (MQ=255)
tGACTGCCAGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGa < 1:3082652/65‑1 (MQ=255)
tGACTGCCAGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGa < 1:470143/65‑1 (MQ=255)
tGACTGCCAGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGa < 1:800902/65‑1 (MQ=255)
tGACTGCCAGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGa < 1:1674843/65‑1 (MQ=255)
tGACTGCCAGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGa < 1:1145107/65‑1 (MQ=255)
tGCCAGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAaca < 1:2132631/65‑1 (MQ=255)
tGCCAGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAaca < 1:467621/65‑1 (MQ=255)
tGCCAGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAaca < 1:2265284/65‑1 (MQ=255)
tGCCAGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAaca < 1:2624133/65‑1 (MQ=255)
gggTGATTTTAAGCTGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAAcacaca < 1:3087705/65‑1 (MQ=255)
|
ATAACGCAGGGGGAATTTTTCGCCTGAATAAAAAGAATTGACTGCCGGGTGATTTTAAGCCGGAGGAATAATGTCATATCTGAATTTAAGACTTTACCAGCGAAACACACA > W3110S.gb/4549708‑4549818
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
