Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I0 R1
|
4577 |
57.4 |
3436498 |
77.7% |
2670158 |
63.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
428,765 |
T→G |
38.1% |
G507G (GGT→GGG) |
nagE → |
fused N‑acetyl glucosamine specific PTS enzyme IICBA components |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 428,765 | 0 | T | G | 38.1%
| 42.4
/ 75.1
| 84 | G507G (GGT→GGG) | nagE | fused N‑acetyl glucosamine specific PTS enzyme IICBA components |
| Reads supporting (aligned to +/- strand): ref base T (20/32); new base G (8/24); total (28/56) |
| Fisher's exact test for biased strand distribution p-value = 2.40e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 |
CCTGTAGCAAAACCGCAGGCTGTACCAAACGCGGTATCTATCGCGGAGCTGGTATCGCCGATTACCGGTGATGTCGTGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGCGGTGGGTGACGG > minE/428697‑428827
|
ccTGTAGCAAAACCGCAGGCTGTACCAAACGCGGTATCTATTGCGGAGCTGGTATCGCCGATTACCGGt < 1:1852224/69‑1 (MQ=255)
ccTGTAGCAAAACCGCAGGCTGTACCAAACGCGGTATCTATCGCGGAGCTGGTATCGCCGATTACCGGt < 1:194438/69‑1 (MQ=255)
ccTGTAGCAAAACCGCAGGCTGTACCAAACGCGGTATCTATCGCGGAGCTGGTATCGCCGATTACCGGt < 1:1924517/69‑1 (MQ=255)
ccTGTAGCAAAACCGCAGGCTGTACCAAACGCGGTATCTATCGCGGAGCTGGTATCGCCGATTACCGGt < 1:1273939/69‑1 (MQ=255)
ccTGTAGCAAAACCGCAGGCTGTACCAAACGCGGTATCTATCGCGGAGCTGGTATCGCCGATTACCGGt < 1:288435/69‑1 (MQ=255)
ccTGTAGCAAAACCGCAGGCTGTACCAAACGCGGTATCTATCGCGGAGCTGGTATCGCCGATTACCGGt < 1:2325075/69‑1 (MQ=255)
ccTGTAGCAAAACCGCAGGCTGTACCAAACGCGGTATCTATCGCGGAGCTGGTATCGCCGATTACCGGt < 1:3375814/69‑1 (MQ=255)
gTAGCAAAACCGCAGGCTGTACCAAACGCGGTATCTATCGCGGAGCTGGTATCGCCGATTACCGGTGAt < 1:479925/69‑1 (MQ=255)
gTAGCAAAACCGCAGGCTGTACCAAACGCGGTATCTATCGCGGAGCTGGTATCGCCGATTACCGGTGAt < 1:1818669/69‑1 (MQ=255)
tAGCAAAACCGCAGGCTGTACCAAACGCGGTATCTATCGCGGAGCTGGTATCGCCGATTACCGGTGAt < 1:683585/68‑1 (MQ=255)
gCAAAACCGCAGGCTGTACCAAACGCGGTATCTATCGCGGAGCTGGTATCGCCGATTACCGGTGATGt < 1:1540313/68‑1 (MQ=255)
aaaaCCGCAGGCTGTACCAAACGCGGTATCTATCGCGGAGCTGGTATCGCCGATTACCGGTGATGTCGt > 1:3411861/1‑69 (MQ=255)
aaCCGCAGGCTGTACCAAACGCGGTATCTATCGCGGAGCTGGTATCGCCGATTACCGGTGATGTCGTgg < 1:1195414/69‑1 (MQ=255)
aCCGCAGGCTGTACCAAACGCGGTATCTATCGCGGAGCTGGTATCGCCGATTACCGGTGATGTCGTGGc < 1:1406108/69‑1 (MQ=255)
aCCGCAGGCTGTACCAAACGCGGTATCTATCGCGGAGCTGGTATCGCCGATTACCGGTGATGTCGTGGc < 1:1639662/69‑1 (MQ=255)
ccGCAGGCTGTACCAAACGCGGTATCTATCGCGGAGCTGGTATCGCCGATTACCGGGGATGTTGTGGCa > 1:1844493/1‑69 (MQ=255)
ccGCAGGCTGTACCAAACGCGGTATCTATCGCGGAGCTGGTATCGCCGATTACCGGGGATGTTGTGGCa > 1:2028288/1‑69 (MQ=255)
ccGCAGGCTGTACCAAACGCGGTATCTATCGCGGAGCTGGTATCGCCGATTACCGGGGATGTTGTGGCa > 1:69461/1‑69 (MQ=255)
ccGCAGGCTGTACCAAACGCGGTATCTATCGCGGAGCTGGTATCGCCGATTACCGGGGATGTTGTGGCa > 1:2573490/1‑69 (MQ=255)
ccGCAGGCTGTACCAAACGCGGTATCTATCGCGGAGCTGGTATCGCCGATTACCGGGGATGTTGTGGCa > 1:1472407/1‑69 (MQ=255)
ccGCAGGCTGTACCAAACGCGGTATCTATCGCGGAGCTGGTATCGCCGATTACCGGGGATGTTGTGGCa > 1:1424699/1‑69 (MQ=255)
ccGCAGGCTGTACCAAACGCGGTATCTATCGCGGAGCTGGTATCGCCGATTACCGGGGATGTTGTGGCa > 1:3076864/1‑69 (MQ=255)
ccGCAGGCTGTACCAAACGCGGTATCTATCGCGGAGCTGGTATCGCCGATTACCGGGGATGTTGTGGCa > 1:3090227/1‑69 (MQ=255)
gTATCTATCGCGGAGCTGGTATCGCCGATTACCGGTGATGTCGTGGCACTGGATCAGGTTCCTGACGaa < 1:1651306/69‑1 (MQ=255)
gTATCTATCGCGGAGCTGGTATCGCCGATTACCGGTGATGTCGTGGCACTGGATCAGGTTCCTGACGaa < 1:2623519/69‑1 (MQ=255)
tatctatcGCGGAGCTGGTATCGCCGATTACCGGTGATGTCGTGGCACTGGATCAGGTTCCTGACGAAg < 1:1743406/69‑1 (MQ=255)
tatctatcGCGGAGCTGGTATCGCCGATTACCGGTGATGTCGTGGCACTGGATCAGGTTCCTGACGAAg < 1:3428908/69‑1 (MQ=255)
atctatcGCGGAGCTGGTATCGCCGATTACCGGTGATGTCGTGGCACTGGATCAGGTTCCTGACGAAGc > 1:1822081/1‑69 (MQ=255)
atctatcGCGGAGCTGGTATCGCCGATTACCGGTGATGTCGTGGCACTGGATCAGGTTCCTGACGAAGc > 1:80604/1‑69 (MQ=255)
tctatcGCGGAGCTGGTATCGCCGATTACCGGTGATGTCGTGGCACTGGATCAGGTTCCTGACGAAGCa > 1:3039154/1‑69 (MQ=255)
tatcGCGGAGCTGGTATCGCCGATTACCGGTGATGTCGTGGCACTGGATCAGGTTCCTGACGAAGCAtt > 1:2534061/1‑69 (MQ=255)
tatcGCGGAGCTGGTATCGCCGATTACCGGTGATGTCGTGGCACTGGATCAGGTTCCTGACGAAGCAtt > 1:566748/1‑69 (MQ=255)
tatcGCGGAGCTGGTATCGCCGATTACCGGTGATGTCGTGGCACTGGATCAGGTTCCTGACGAAGCAtt > 1:1999442/1‑69 (MQ=255)
tatcGCGGAGCTGGTATCGCCGATTACCGGTGATGTCGTGGCACTGGATCAGGTTCCTGACGAAGCAtt > 1:1117814/1‑69 (MQ=255)
gCTGGTATCGCCGATTACCGGTGATGTCGTGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCaa > 1:2878167/1‑69 (MQ=255)
gCTGGTATCGCCGATTACCGGTGATGTCGTGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCaa > 1:3230006/1‑69 (MQ=255)
gCTGGTATCGCCGATTACCGGTGATGTCGTGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCaa > 1:1511876/1‑69 (MQ=255)
ggTATCGCCGATTACCGGGGATGTTGTGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGc < 1:768865/69‑1 (MQ=255)
ggTATCGCCGATTACCGGGGATGTTGTGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGc < 1:1260127/69‑1 (MQ=255)
ggTATCGCCGATTACCGGGGATGTTGTGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGc < 1:1261503/69‑1 (MQ=255)
ggTATCGCCGATTACCGGGGATGTTGTGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGc < 1:3038573/69‑1 (MQ=255)
ggTATCGCCGATTACCGGGGATGTTGTGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGc < 1:3025982/69‑1 (MQ=255)
ggTATCGCCGATTACCGGGGATGTTGTGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGc < 1:2962683/69‑1 (MQ=255)
ggTATCGCCGATTACCGGGGATGTTGTGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGc < 1:838004/69‑1 (MQ=255)
ggTATCGCCGATTACCGGGGATGTTGTGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGc < 1:2755058/69‑1 (MQ=255)
ggTATCGCCGATTACCGGGGATGTTGTGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGc < 1:2706012/69‑1 (MQ=255)
ggTATCGCCGATTACCGGGGATGTTGTGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGc < 1:3373512/69‑1 (MQ=255)
ggTATCGCCGATTACCGGGGATGTTGTGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGc < 1:1468954/69‑1 (MQ=255)
ggTATCGCCGATTACCGGGGATGTTGTGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGc < 1:148809/69‑1 (MQ=255)
ggTATCGCCGATTACCGGGGATGTTGTGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGc < 1:1542653/69‑1 (MQ=255)
ggTATCGCCGATTACCGGGGATGTTGTGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGc < 1:600832/69‑1 (MQ=255)
ggTATCGCCGATTACCGGGGATGTTGTGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGc < 1:2476656/69‑1 (MQ=255)
ggTATCGCCGATTACCGGGGATGTTGTGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGc < 1:1838843/69‑1 (MQ=255)
ggTATCGCCGATTACCGGGGATGTTGTGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGc < 1:1780394/69‑1 (MQ=255)
ggTATCGCCGATTACCGGGGATGTTGTGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGc < 1:1788817/69‑1 (MQ=255)
ggTATCGCCGATTACCGGGGATGTTGTGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGc < 1:235328/69‑1 (MQ=255)
ggTATCGCCGATTACCGGGGATGTTGTGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGc < 1:638441/69‑1 (MQ=255)
ggTATCGCCGATTACCGGGGATGTTGTGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGc < 1:2264477/69‑1 (MQ=255)
gTATCGCCGATTACCGGGGATGTTGTGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGc < 1:2004967/68‑1 (MQ=255)
tATCGCCGATTACCGGGGATGTTGTGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGc < 1:2722614/67‑1 (MQ=255)
aTCGCCGATTACCGGTGATGTCGTGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGCggt > 1:508937/1‑69 (MQ=255)
aTCGCCGATTACCGGTGATGTCGTGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGCggt > 1:3158763/1‑69 (MQ=255)
aTCGCCGATTACCGGTGATGTCGTGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGCggt > 1:327067/1‑69 (MQ=255)
aTCGCCGATTACCGGTGATGTCGTGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGCggt > 1:889947/1‑69 (MQ=255)
aTCGCCGATTACCGGTGATGTCGTGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGCggt > 1:2073616/1‑69 (MQ=255)
tCGCCGATTACCGGTGATGTCGTGGCACTGTATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGCggtg < 1:2471867/69‑1 (MQ=255)
tCGCCGATTACCGGTGATGTCGTGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGCggtt < 1:2218578/69‑2 (MQ=255)
tCGCCGATTACCGGTGATGTCGTGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGCggtg < 1:3329779/69‑1 (MQ=255)
tCGCCGATTACCGGTGATGTCGTGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGCggtg < 1:421912/69‑1 (MQ=255)
tCGCCGATTACCGGTGATGTCGTGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGCggtg < 1:1821697/69‑1 (MQ=255)
tCGCCGATTACCGGTGATGTCGTGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGCggtg < 1:254666/69‑1 (MQ=255)
tCGCCGATTACCGGTGATGTCGTGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGCggtg < 1:2653793/69‑1 (MQ=255)
tCGCCGATTACCGGTGATGTCGTGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGCggtg < 1:1437467/69‑1 (MQ=255)
tCGCCGATTACCGGTGATGTCGTGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGCggtg < 1:1389707/69‑1 (MQ=255)
tCGCCGATTACCGGTGATGTCGTGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGCggtg < 1:2800521/69‑1 (MQ=255)
tCGCCGATTACCGGTGATGTCGTGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGCggtg < 1:3216397/69‑1 (MQ=255)
tCGCCGATTACCGGTGATGTCGTGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGCggtg < 1:3204419/69‑1 (MQ=255)
tCGCCGATTACCGGTGATGTCGTGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGCggtg < 1:3163833/69‑1 (MQ=255)
tCGCCGATTACCGGTGATGTCGTGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGCggtg > 1:1011402/1‑69 (MQ=255)
tCGCCGATTACCGGTGATGTCGTGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGCggtg < 1:3097304/69‑1 (MQ=255)
tCGCCGATTACCGGTGATGTCGTGGCACGGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGCggtg < 1:3122168/69‑1 (MQ=255)
gCCGATTACCGGTGATGTCGTGGCACTGGATCAGGTTCCTGACGAAg < 1:1773882/47‑1 (MQ=255)
gCCGATTACCGGTGATGTCGTGGCACTGGATCAGGTTCCTGACGAAg < 1:1496322/47‑1 (MQ=255)
gCCGATTACCGGTGATGTCGTGGCACTGGATCAGGTTCCTGACGAAg < 1:3023591/47‑1 (MQ=255)
gCCGATTACCGGTGATGTCGTGGCACTGGATCAAGTTCCTGACGAAg < 1:2360906/47‑1 (MQ=255)
gCCGATTACCGGGGATGTCGTGGCACTGGATCAGGTTCCTGACGAAg < 1:469441/47‑1 (MQ=255)
tACCGGTGATGTCGTGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGCggtg < 1:3429246/61‑1 (MQ=255)
tACCGGTGATGTCGTGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGCGGTGGGTGACgg < 1:2296458/69‑1 (MQ=255)
tACCGGTGATGTCGTGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGCGGTGGGTGACgg > 1:2683384/1‑69 (MQ=255)
tACCGGTGATGTCGTGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGCGGTGGGTGACgg > 1:2761731/1‑69 (MQ=255)
tACCGGTGATGTCGTGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGCGGTGGGTGACgg > 1:1277492/1‑69 (MQ=255)
|
CCTGTAGCAAAACCGCAGGCTGTACCAAACGCGGTATCTATCGCGGAGCTGGTATCGCCGATTACCGGTGATGTCGTGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGCGGTGGGTGACGG > minE/428697‑428827
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
