Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I0 R1
|
4577 |
57.4 |
3436498 |
77.7% |
2670158 |
63.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
481,239 |
C→T |
49.3% |
R11R (CGC→CGT) |
ybgC → |
predicted acyl‑CoA thioesterase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 481,239 | 0 | C | T | 49.3%
| ‑2.3
/ 63.9
| 71 | R11R (CGC→CGT) | ybgC | predicted acyl‑CoA thioesterase |
| Reads supporting (aligned to +/- strand): ref base C (23/13); new base T (19/16); total (42/29) |
| Fisher's exact test for biased strand distribution p-value = 4.74e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.96e-01 |
AGCTCTAACTTTTGTTGCATTACCGGGATGTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTCGCGTCTACTATGAAGATACCGATGCCGGTGGTGTGGTGTACCACGCCAGT > minE/481173‑481287
|
aGCTCTAACTTTTGTTGCATTACCGGGATGTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTcgcg < 1:2083001/68‑1 (MQ=255)
aGCTCTAACTTTTGTTGCATTACCGGGATGTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTcgcg < 1:401867/68‑1 (MQ=255)
aGCTCTAACTTTTGTTGCATTACCGGGATGTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTcgcg < 1:683506/68‑1 (MQ=255)
aGCTCTAACTTTTGTTGCATTACCGGGATGTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTcgcg < 1:289030/68‑1 (MQ=255)
aGCTCTAACTTTTGTTGCATTACCGGGATGTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTcgcg < 1:1325125/68‑1 (MQ=255)
aGCTCTAACTTTTGTTGCATTACCGGGATGTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTcgcg < 1:133833/68‑1 (MQ=255)
aGCTCTAACTTTTGTTGCATTACCGGGATGTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTcgcg < 1:2355473/68‑1 (MQ=255)
aGCTCTAACTTTTGTTGCATTACCGGGATGTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTcgcg < 1:2384162/68‑1 (MQ=255)
aGCTCTAACTTTTGTTGCATTACCGGGATGTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTcgcg < 1:1808583/68‑1 (MQ=255)
aGCTCTAACTTTTGTTGCATTACCGGGATGTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTcgcg < 1:334090/68‑1 (MQ=255)
aGCTCTAACTTTTGTTGCATTACCGGGATGTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTcgcg < 1:2527540/68‑1 (MQ=255)
gCTCTAACTTTTGTTGCATTACCGGGATGTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTCGCGTc < 1:3358982/69‑1 (MQ=255)
gCTCTAACTTTTGTTGCATTACCGGGATGTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTCGCGTc < 1:1732708/69‑1 (MQ=255)
gCTCTAACTTTTGTTGCATTACCGGGATGTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTCGCGTc < 1:2586013/69‑1 (MQ=255)
gCTCTAACTTTTGTTGCATTACCGGGATGTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTCGCGTc < 1:1655450/69‑1 (MQ=255)
gCTCTAACTTTTGTTGCATTACCGGGATGTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTCGCGTc < 1:2663154/69‑1 (MQ=255)
ctctAACTTTTGTTGCATTACCGGGATGTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTCGCGTct > 1:141688/1‑69 (MQ=255)
ctctAACTTTTGTTGCATTACCGGGATGTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTCGCGTct > 1:1073342/1‑69 (MQ=255)
ctAACTTTTGTTGCATTACCGGGATGTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTCGCGTctac < 1:2202252/69‑1 (MQ=255)
cTTTTGTTGCATTACCGGGATGTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTCGTGTctacta > 1:411454/1‑67 (MQ=255)
cTTTTGTTGCATTACCGGGATGTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTCGTGTctacta > 1:3418275/1‑67 (MQ=255)
cTTTTGTTGCATTACCGGGATGTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTCGTGTctacta > 1:267743/1‑67 (MQ=255)
cTTTTGTTGCATTACCGGGATGTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTCGTGTctacta > 1:2842014/1‑67 (MQ=255)
cTTTTGTTGCATTACCGGGATGTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTCGTGTctacta > 1:3003091/1‑67 (MQ=255)
cTTTTGTTGCATTACCGGGATGTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTCGTGTctacta > 1:2335721/1‑67 (MQ=255)
cTTTTGTTGCATTACCGGGATGTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTCGTGTctacta > 1:3009975/1‑67 (MQ=255)
cTTTTGTTGCATTACCGGGATGTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTCGTGTctacta > 1:2195908/1‑67 (MQ=255)
cTTTTGTTGCATTACCGGGATGTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTCGTGTctacta > 1:1286777/1‑67 (MQ=255)
cTTTTGTTGCATTACCGGGATGTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTCGTGTctacta > 1:1479490/1‑67 (MQ=255)
cTTTTGTTGCATTACCGGGATGTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTCGTGTctacta > 1:86392/1‑67 (MQ=255)
cTTTTGTTGCATTACCGGGATGTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTCGTGTctacta > 1:1451701/1‑67 (MQ=255)
cTTTTGTTGCATTACCGGGATGTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTCGTGTctacta > 1:1784488/1‑67 (MQ=255)
cTTTTGTTGCATTACCGGGATGTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTCGTGTctacta > 1:181908/1‑67 (MQ=255)
cTTTTGTTGCATTACCGGGATGTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTCGTGTctacta > 1:963752/1‑67 (MQ=255)
cTTTTGTTGCATTACCGGGATGTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTCGTGTctacta > 1:1928906/1‑67 (MQ=255)
cTTTTGTTGCATTACCGGGATGTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTCGTGTctacta > 1:581900/1‑67 (MQ=255)
cTTTTGTTGCATTACCGGGATGTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTCGTGTctacta > 1:1114416/1‑67 (MQ=255)
cTTTTGTTGCATTAACGGGATGTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTCGTGTctacta > 1:821319/1‑67 (MQ=255)
gCATTACCGGGATGTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTCGTGTCTACTATGAAGATAcc < 1:3198680/69‑1 (MQ=255)
gCATTACCGGGATGTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTCGTGTCTACTATGAAGATAcc < 1:331888/69‑1 (MQ=255)
gCATTACCGGGATGTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTCGTGTCTACTATGAAGATAcc < 1:307736/69‑1 (MQ=255)
gCATTACCGGGATGTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTCGTGTCTACTATGAAGATAcc < 1:3320154/69‑1 (MQ=255)
gCATTACCGGGATGTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTCGTGTCTACTATGAAGATAcc < 1:883393/69‑1 (MQ=255)
gCATTACCGGGATGTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTCGTGTCTACTATGAAGATAcc < 1:2813776/69‑1 (MQ=255)
gCATTACCGGGATGTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTCGTGTCTACTATGAAGATAcc < 1:506976/69‑1 (MQ=255)
gCATTACCGGGATGTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTCGTGTCTACTATGAAGATAcc < 1:684086/69‑1 (MQ=255)
gCATTACCGGGATGTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTCGTGTCTACTATGAAGATAcc < 1:2456069/69‑1 (MQ=255)
gCATTACCGGGATGTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTCGTGTCTACTATGAAGATAcc < 1:371471/69‑1 (MQ=255)
gCATTACCGGGATGTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTCGTGTCTACTATGAAGATAcc < 1:1814880/69‑1 (MQ=255)
gCATTACCGGGATGTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTCGTGTCTACTATGAAGATAcc < 1:2353880/69‑1 (MQ=255)
gCATTACCGGGATGTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTCGTGTCTACTATGAAGATAcc < 1:2001322/69‑1 (MQ=255)
gCATTACCGGGATGTAAAGTGAATACAACGCTGTTACGATGGCCGGTTCGTGTCTACTATGAAGATAcc < 1:2940478/69‑1 (MQ=255)
ccATTACCGGGATGTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTCGTGTCTACTATGAAGATAc < 1:1676937/67‑1 (MQ=255)
gggATGTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTCGCGTCTACTATGaa < 1:1878986/55‑1 (MQ=255)
gTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTCGCGTCTACTATGAAGa > 1:351785/1‑52 (MQ=255)
gTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTCGCGTCTACTATGAAGa > 1:1103074/1‑52 (MQ=255)
gTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTCGCGTCTACTATGAAGa > 1:2990011/1‑52 (MQ=255)
gTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTCGCGTCTACTATGAAGa > 1:1489258/1‑52 (MQ=255)
gTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTCGCGTCTACTATGAAGa > 1:2400993/1‑52 (MQ=255)
gTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTCGCGTCTACTATGAAGATACCGATGCCGgtggtg > 1:2059508/1‑69 (MQ=255)
gTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTCGCGTCTACTATGAAGATACCGATGCCGgtggtg > 1:979490/1‑69 (MQ=255)
gTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTCGCGTCTACTATGAAGATACCGATGCCGgtggtg > 1:3123482/1‑69 (MQ=255)
gTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTCGCGTCTACTATGAAGATACCGATGCCGgtggtg > 1:3410355/1‑69 (MQ=255)
gTAAAGTGAATACAACGCTGTTTCGATGG‑CGGTTCGCGTCTACTATGAAGATACCGATGCCGgtggtgt > 1:577123/1‑69 (MQ=255)
tAAAGTGAATACAACGCTGTTTCGATGGCCGGTTCGCGTCTACTATGAAGATACCGATGCCggt > 1:3180053/1‑64 (MQ=255)
tAAAGTGAATACAACGCTGTTTCGATGGCCGGTTCGCGTCTACTATGAAGATACCGATGCCggt > 1:1255991/1‑64 (MQ=255)
tAAAGTGAATACAACGCTGTTTCGATGGCCGGTTCGCGTCTACTATGAAGATACCGATGCCggt > 1:1413599/1‑64 (MQ=255)
tAAAGTGAATACAACGCTGTTTCGATGGCCGGTTCGCGTCTACTATGAAGATACCGATGCCggt > 1:2175599/1‑64 (MQ=255)
tAAAGTGAATACAACGCTGTTTCGATGGCCGGTTCGCGTCTACTATGAAGATACCGATGCCggt > 1:1803184/1‑64 (MQ=255)
tAAAGTGAATACAACGCTGTTTCGATGGCCGGTTCGCGTCTACTATGAAGATACCGATGCCggt > 1:678735/1‑64 (MQ=255)
tAAAGTGAATACAACGCTGTTTCGATGGCCGGTTCGCGTCTACTATGAAGATACCGATGCCgg > 1:1714515/1‑63 (MQ=255)
tAAAGTGAATACAACGCTGTTTCGATGGCCGGTTCGCGTCTACTATGAAGATACCGATGCCGgtggtgt > 1:1843937/1‑69 (MQ=255)
tGAATACAACGCTGTTTCGATGGCCGGTTCGCGTCTACTATGAAGATACCGATGCCGGtggtatggtg > 1:2627506/1‑68 (MQ=255)
tGAATACAACGCTGTTTCGATGGCCGGTTCGCGTCTACTATGAAGATACCGATGCCGGTggtgtggtgt > 1:2472436/1‑69 (MQ=255)
tGAATACAACGCTGTTTCGATGGCCGGTTCGCGTCTACTATGAAGATACCGATGCCGGTggtgtggtgt > 1:2257689/1‑69 (MQ=255)
aTACAACGCTGTTTCGATGGCCGGTTCGTGTCTACTATGAAGATAcc < 1:2862211/47‑1 (MQ=255)
cTGTTTCGATGGCCGGTTCGCGTCTACTATGAAGATACCGATGCCGGTGGTGTGGTGTACCACGCCAGt < 1:718966/69‑1 (MQ=255)
cTGTTTCGATGGCCGGTTCGCGTCTACTATGAAGATACCGATGCCGGTGGTGTGGTGTACCACGCCAGt < 1:2668247/69‑1 (MQ=255)
cTGTTTCGATGGCCGGTTCGCGTCTACTATGAAGATACCGATGCCGGTGGTGTGGTGCACCACGCCAGt < 1:2402266/69‑1 (MQ=255)
ggCCGGTTCGCGTCTACTATGAAGATACCGATGCCGgtggtgtgg < 1:1990000/45‑1 (MQ=255)
ggCCGGTTCGCGTCTACTATGAAGATACCGATGCCGgtggtgtgg < 1:536604/45‑1 (MQ=255)
ggCCGGTTCGCGTCTACTATGAAGATACCGATGCCGgtggtgtgg < 1:298018/45‑1 (MQ=255)
|
AGCTCTAACTTTTGTTGCATTACCGGGATGTAAAGTGAATACAACGCTGTTTCGATGGCCGGTTCGCGTCTACTATGAAGATACCGATGCCGGTGGTGTGGTGTACCACGCCAGT > minE/481173‑481287
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
