Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I0 R1
|
4577 |
57.4 |
3436498 |
77.7% |
2670158 |
63.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
745,114 |
T→C |
20.5% |
intergenic (+174/‑226) |
ycfP → / → ndh |
conserved hypothetical protein/respiratory NADH dehydrogenase 2/cupric reductase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 745,114 | 0 | T | C | 20.5%
| 173.4
/ 33.9
| 121 | intergenic (+174/‑226) | ycfP/ndh | conserved hypothetical protein/respiratory NADH dehydrogenase 2/cupric reductase |
| Reads supporting (aligned to +/- strand): ref base T (52/44); new base C (18/7); total (70/51) |
| Fisher's exact test for biased strand distribution p-value = 1.19e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.92e-01 |
Only 100 of 121 total aligned reads displayed.
AGGCCTACCGAACGCCCTGCATACACCCCTCACTCTATATCACTCTCACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCACCCGGTAAAGTCGCCTATC > minE/745061‑745173
|
aGGCCTACCGAACGCCCTGCATACACCCCTCACTCTATATCACTCTCACAAATTCGCTCAAATaataaa < 1:886163/69‑1 (MQ=255)
aGGCCTACCGAACGCCCTGCATACACCCCTCACTCTATATCACTCTCACAAATTCGCTCAAATaataaa < 1:1936844/69‑1 (MQ=255)
aGGCCTACCGAACGCCCTGCATACACCCCTCACTCTATATCACTCTCACAAATTCGCTCAAATaataaa < 1:140745/69‑1 (MQ=255)
aGGCCTACCGAACGCCCTGCATACACCCCTCACTCTATATCACTCTCACAAATTCGCTCAAATaataaa < 1:2049674/69‑1 (MQ=255)
aGGCCTACCGAACGCCCTGCATACACCCCTCACTCTATATCACTCTCACAAATTCGCTCAAATaataaa < 1:2055170/69‑1 (MQ=255)
aGGCCTACCGAACGCCCTGCATACACCCCTCACTCTATATCACTCTCACAAATTCGCTCAAATaataaa < 1:2516337/69‑1 (MQ=255)
gCCTACCGAATGCCCTCCATACACACCTCACTCTATATCACTCTCACAAATCAGCTCAAATaataaac < 1:1597807/68‑1 (MQ=255)
gCCTACCGAATGCCCTCCATACACACCTCACTCTATATCACTCTCACAAATCAGCTCAAATaataaac < 1:2187524/68‑1 (MQ=255)
gCCTACCGAATGCCCTCCATACACACCTCACTCTATATCACTCTCACAAATCAGCTCAAATaataaac < 1:2340632/68‑1 (MQ=255)
gCCTACCGAATGCCCTCCATACACACCTCACTCTATATCACTCTCACAAATCAGCTCAAATaataaac < 1:932385/68‑1 (MQ=255)
gCCTACCGAATGCCCTCCATACACACCTCACTCTATATCACTCTCACAAATCAGCTCAAATaataaac < 1:2567040/68‑1 (MQ=255)
gCCTACCGAATGCCCTCCATACACACCTCACTCTATATCACTCTCACAAATCAGCTCAAATaataaac < 1:2619117/68‑1 (MQ=255)
tACACCCCTCACTCTATATCACTCTCACAAATTCGCTCAAATAATAAACACTAAACTCTGTTTTTTGa < 1:3072712/68‑1 (MQ=255)
tACACCCCTCACTCTATATCACTCTCACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGa < 1:3055148/68‑1 (MQ=255)
tACACCCCTCACTCTATATCACTCTCACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGa < 1:3430038/68‑1 (MQ=255)
tACACCCCTCACTCTATATCACTCTCACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGa < 1:487396/68‑1 (MQ=255)
tACACCCCTCACTCTATATCACTCTCACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGa < 1:2217735/68‑1 (MQ=255)
tACACCCCTCACTCTATATCACTCTCACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGa < 1:1190908/68‑1 (MQ=255)
acacCCCTCACTCTATATCACTCTCACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGa < 1:3164046/67‑1 (MQ=255)
cacCCCTCACTCTATATCACTCTCACAAATTCGCTCATATAATAAACAATAAACTCTGTTTTTTGAtct > 1:1570614/1‑69 (MQ=255)
cacCCCTCACTCTATATCACTCTCACAAATTCGCTCAAATaataaacaata < 1:1024046/51‑1 (MQ=255)
cacCCCTCACTCTATATCACTCTCACAAATTCGCTCAAATaataaacaata < 1:3021972/51‑1 (MQ=255)
cacCCCTCACTCTATATCACTCTCACAAATTCGCTCAAATaataaacaata < 1:2629147/51‑1 (MQ=255)
cacCCCTCACTCTATATCACTCTCACAAATTCGCTCAAATaataaacaata < 1:1066524/51‑1 (MQ=255)
cacCCCTCACTCTATATCACTCTCACAAATTCGCTCAAATaataaacaata < 1:2350682/51‑1 (MQ=255)
cacCCCTCACTCTATATCACTCTCACAAATTCGCTCAAATaataaacaata < 1:2346669/51‑1 (MQ=255)
cacCCCTCACTCTATATCACTCTCACAAATTCGCTCAAATaataaacaata < 1:2148037/51‑1 (MQ=255)
cacCCCTCACTCTATATCACTCTCACAAATTCGCTCAAATaataaacaata < 1:1862524/51‑1 (MQ=255)
cacCCCTCACTCTATATCACTCTCACAAATTCGCTCAAATaataaacaata < 1:1817453/51‑1 (MQ=255)
cacCCCTCACTCTATATCACTCTCACAAATTCGCTCAAATaataaacaata < 1:1712988/51‑1 (MQ=255)
cacCCCTCACTCTATATCACTCTCACAAATTCGCTCAAATaataaacaata < 1:170312/51‑1 (MQ=255)
cacCCCTCACTCTATATCACTCTCACAAATTCGCTCAAATaataaacaata < 1:1618218/51‑1 (MQ=255)
cacCCCTCACTCTATATCACTCTCACAAATTCGCTCAAATaataaacaata < 1:918387/51‑1 (MQ=255)
cacCCCTCACTCTATATCACTCTCACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGAtct > 1:797760/1‑69 (MQ=255)
cacCCCTCACTCTATATCACTCTCACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGAtct > 1:701164/1‑69 (MQ=255)
cacCCCTCACTCTATATCACTCTCACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGAtct > 1:2173562/1‑69 (MQ=255)
cacCCCTCACTCTATATCACTCTCACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGAtct > 1:2190958/1‑69 (MQ=255)
cacCCCTCACTCTATATCACTCTCACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGAtct > 1:3194352/1‑69 (MQ=255)
cacCCCTCACTCTATATCACTCTCACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGAtct > 1:2310234/1‑69 (MQ=255)
cacCCCTCACTCTATATCACTCTCACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGAtc > 1:2738475/1‑68 (MQ=255)
tCACTCTATATCACTCTCACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCAccc > 1:279681/1‑68 (MQ=255)
tCACTCTATATCACTCTCACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCAccc > 1:75907/1‑68 (MQ=255)
tCACTCTATATCACTCTCACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCAccc > 1:2645889/1‑68 (MQ=255)
tCACTCTATATCACTCTCACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCAccc > 1:3157312/1‑68 (MQ=255)
tCACTCTATATCACTCTCACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCAccc > 1:10561/1‑68 (MQ=255)
tCACTCTATATCACTCTCACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCAccc > 1:3101373/1‑68 (MQ=255)
tCACTCTATATCACTCTCACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCAccc > 1:412014/1‑68 (MQ=255)
tCACTCTATATCACTCTCACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCAccc > 1:2087541/1‑68 (MQ=255)
tctATATCACTCTCACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCACCCGGTaa > 1:3022347/1‑69 (MQ=255)
tctATATCACTCTCACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCACCCGGTaa > 1:2498763/1‑69 (MQ=255)
tctATATCACTCTCACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCACCCGGTaa > 1:1532363/1‑69 (MQ=255)
tctATATCACTCTCACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCACCCGGTaa > 1:134515/1‑69 (MQ=255)
ctATATCACTCTCACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCACCCGGTaaa > 1:1580084/1‑69 (MQ=255)
tataTCACTCTCACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCACCCGGTAAAg > 1:888951/1‑69 (MQ=255)
tataTCACTCTCACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCACCCGGTAAAg > 1:1525191/1‑69 (MQ=255)
tataTCACTCTCACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCACCCGGTAAAg > 1:3011001/1‑69 (MQ=255)
tataTCACTCTCACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCACCCGGTAAAg > 1:2880097/1‑69 (MQ=255)
tataTCACTCTCACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCACCCGGTAAAg > 1:2803297/1‑69 (MQ=255)
tataTCACTCTCACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCACCCGGTAAAg > 1:825976/1‑69 (MQ=255)
tataTCACTCTCACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCACCCGGTAAAg > 1:753824/1‑69 (MQ=255)
tatCACTCTCACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGAtct > 1:2731195/1‑55 (MQ=255)
tatCACTCTCACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCACCCGGTAAAGt > 1:1922957/1‑68 (MQ=255)
tatCACTCTCACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCACCCGGTAAAGTc > 1:2724929/1‑69 (MQ=255)
tatCACTCTCACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCACCCGGTAAAGTc > 1:1308072/1‑69 (MQ=255)
tatCACTCTCACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCACCCGGTAAAGTc > 1:1620558/1‑69 (MQ=255)
atCACTCTCACAAATCAGCTGAAATAATAAACAACAAACTCTGTTTTTTGATCTCACCCGGTAAAGTCg > 1:2276332/1‑69 (MQ=255)
atCACTCTCACAAATCAGCTCAAATAATAAACAACAAACTCTg > 1:1149700/1‑43 (MQ=37)
atCACTCTCACAAATCAGCTCAAATAATAAACAACAAACTCTGTTTTTTGAtct > 1:1037142/1‑54 (MQ=255)
atCACTCTCACAAATCAGCTCAAATAATAAACAACAAACTCTGTTTTTTGATCTCACGCGGTAAAGTCg > 1:133364/1‑69 (MQ=255)
atCACTCTCACAAATCAGCTCAAATAATAAACAACAAACTCTGTTTTTTGATCTCACCCGGTaaa > 1:1064254/1‑65 (MQ=255)
atCACTCTCACAAATCAGCTCAAATAATAAACAACAAACTCTGTTTTTTGATCTCACCCGGTAAAGt > 1:774720/1‑67 (MQ=255)
atCACTCTCACAAATCAGCTCAAATAATAAACAACAAACTCTGTTTTTTGATCTCACCCGGTAAAGTCg > 1:996036/1‑69 (MQ=255)
atCACTCTCACAAATCAGCTCAAATAATAAACAACAAACTCTGTTTTTTGATCTCACCCGGTAAAGTCg > 1:3117608/1‑69 (MQ=255)
atCACTCTCACAAATCAGCTCAAATAATAAACAACAAACTCTGTTTTTTGATCTCACCCGGTAAAGTCg > 1:3187478/1‑69 (MQ=255)
atCACTCTCACAAATCAGCTCAAATAATAAACAACAAACTCTGTTTTTTGATCTCACCCGGTAAAGTCg > 1:548474/1‑69 (MQ=255)
atCACTCTCACAAATCAGCTCAAATAATAAACAACAAACTCTGTTTTTTGATCTCACCCGGTAAAGTCg > 1:2833184/1‑69 (MQ=255)
atCACTCTCACAAATCAGCTCAAATAATAAACAACAAACTCTGTTTTTTGATCTCACCCGGTAAAGTCg > 1:1941040/1‑69 (MQ=255)
atCACTCTCACAAATCAGCTCAAATAATAAACAACAAACTCTGTTTTTTGATCTCACCCGGTAAAGTCg > 1:1490470/1‑69 (MQ=255)
atCACTCTCACAAATCAGCTCAAATAATAAACAACAAACTCTGTTTTTTGATCTCACCCGGTAAAGTCg > 1:1815422/1‑69 (MQ=255)
cACTCTCACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCACCCGGTAAAGTCGcc > 1:644250/1‑69 (MQ=255)
cACTCTCACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCACCCGGTAAAGTCGcc > 1:297341/1‑69 (MQ=255)
cACTCTCACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCACCCGGTAAAGTCGcc > 1:2733038/1‑69 (MQ=255)
aCTCTCACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCACCCGGTAAAGTCGcc < 1:971346/68‑1 (MQ=255)
aCTCTCACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCACCCGGTAAAGTCGcc < 1:2531115/68‑1 (MQ=255)
aCTCTCACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCACCCGGTAAAGTCGcc < 1:462676/68‑1 (MQ=255)
aCTCTCACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCACCCGGTAAAGTCGcc < 1:2657566/68‑1 (MQ=255)
aCTCTCACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCACCCGGTAAAGTCGcc < 1:2531116/68‑1 (MQ=255)
aCTCTCACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCACCCGGTAAAGTCGcc < 1:1982908/68‑1 (MQ=255)
aCTCTCACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCACCCGGTAAAGTCGcc < 1:1627301/68‑1 (MQ=255)
aCTCTCACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCACCCGGTAAAGTCGcc < 1:1042680/68‑1 (MQ=255)
ctcACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCa < 1:3086457/50‑1 (MQ=255)
ctcACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCa < 1:2982372/50‑1 (MQ=255)
ctcACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCa < 1:2966420/50‑1 (MQ=255)
ctcACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCa > 1:736236/1‑50 (MQ=255)
ctcACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCa > 1:2655636/1‑50 (MQ=255)
ctcACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCa > 1:2041446/1‑50 (MQ=255)
ctcACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCa > 1:1741036/1‑50 (MQ=255)
ctcACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCa < 1:152063/50‑1 (MQ=255)
ctcACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCa < 1:1075076/50‑1 (MQ=255)
ctcACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCACCCGGTAAAGTCGCCTATc > 1:1030919/1‑69 (MQ=255)
|
AGGCCTACCGAACGCCCTGCATACACCCCTCACTCTATATCACTCTCACAAATTCGCTCAAATAATAAACAATAAACTCTGTTTTTTGATCTCACCCGGTAAAGTCGCCTATC > minE/745061‑745173
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
