Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I0 R1
|
4577 |
57.4 |
3436498 |
77.7% |
2670158 |
63.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
763,004 |
G→T |
43.4% |
V232V (GTC→GTA) |
potB ← |
polyamine transporter subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 763,004 | 0 | G | T | 43.4%
| 47.8
/ 76.0
| 85 | V232V (GTC→GTA) | potB | polyamine transporter subunit |
| Reads supporting (aligned to +/- strand): ref base G (24/24); new base T (11/26); total (35/50) |
| Fisher's exact test for biased strand distribution p-value = 7.67e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TACGATAGTCAGCGTAATGCTGGTAGCTGCACCAAACGGCCAGTCACGAATATTAAGGAACTGGACCTTGATGACGTTACCGATCAGCAGGTTTTTCGCACCGCCCATCAGGTCGGATACATAG > minE/762941‑763064
|
tACGATAGTCAGCGTAATGCTGGTAGCTGCACCAAACGGCCAGTCACGAATATTAAGTAACTGGACCtt > 1:1873760/1‑69 (MQ=255)
tACGATAGTCAGCGTAATGCTGGTAGCTGCACCAAACGGCCAGTCACGAATATTAAGGAACTGGACCtt > 1:1101715/1‑69 (MQ=255)
tACGATAGTCAGCGTAATGCTGGTAGCTGCACCAAACGGCCAGTCACGAATATTAAGGAACTGGACCtt > 1:2148092/1‑69 (MQ=255)
tACGATAGTCAGCGTAATGCTGGTAGCTGCACCAAACGGCCAGTCACGAATATTAAGGAACTGGACCtt > 1:208059/1‑69 (MQ=255)
tACGATAGTCAGCGTAATGCTGGTAGCTGCACCAAACGGCCAGTCACGAATATTAAGGAACTGGACCtt > 1:1321942/1‑69 (MQ=255)
tACGATAGTCAGCGTAATGCTGGTAGCTGCACCAAACGGCCAGTCACGAATATTAAGGAACTGGACCtt > 1:881198/1‑69 (MQ=255)
tACGATAGTCAGCGTAATGCTGGTAGCTGCACCAAACGGCCAGTCACGAATATTAAGGAACTGGACCtt > 1:971326/1‑69 (MQ=255)
aCGATAGTCAGCGTAATGCTGGTGGCTGCACCAAACGGCCAGTCACGAATATTGAGGAACTGTACCt > 1:1656989/1‑67 (MQ=255)
aCGATAGTCAGCGTAATGCTGGTGGCTGCACCAAACGGCCAGTCACGAATATTGAGGAACTGTACCTtg > 1:427283/1‑69 (MQ=255)
aCGATAGTCAGCGTAATGCTGGTGGCTGCACCAAACGGCCAGTCACGAATATTGAGGAACTGTACCTtg > 1:2352868/1‑69 (MQ=255)
aCGATAGTCAGCGTAATGCTGGTGGCTGCACCAAACGGCCAGTCACGAATATTGAGGAACTGTACCTtg > 1:2292157/1‑69 (MQ=255)
aCGATAGTCAGCGTAATGCTGGTGGCTGCACCAAACGGCCAGTCACGAATATTGAGGAACTGTACCTtg > 1:771409/1‑69 (MQ=255)
aCGATAGTCAGCGTAATGCTGGTGGCTGCACCAAACGGCCAGTCACGAATATTGAGGAACTGTACCTtg > 1:1585307/1‑69 (MQ=255)
aCGATAGTCAGCGTAATGCTGGTGGCTGCACCAAACGGCCAGTCACGAATATTGAGGAACTGTACCTtg > 1:2824321/1‑69 (MQ=255)
aCGATAGTCAGCGTAATGCTGGTGGCTGCACCAAACGGCCAGTCACGAATATTGAGGAACTGTACCTtg > 1:1409288/1‑69 (MQ=255)
aCGATAGTCAGCGTAATGCTGGTGGCTGCACCAAACGGCCAGTCACGAATATTGAGGAACTGTACCTtg > 1:2626528/1‑69 (MQ=255)
aCGATAGTCAGCGTAATGCTGGTGGCTGCACCAAACGGCCAGTCACGAATATTGAGGAACTGTACCTtg > 1:2810771/1‑69 (MQ=255)
aCGATAGTCAGCGTAATGCTGGTGGCTGCACCAAACGGCCAGTCACGAATATTGAGGAACTGTACCTtg > 1:1281796/1‑69 (MQ=255)
aCGATAGTCAGCGTAATGCTGGTAGCTGCACCAAACGGCCAGTCACGAATATTAAGGAACTGGACCTtg > 1:1214308/1‑69 (MQ=255)
aCGATAGTCAGCGTAATGCTGGTAGCTGCACCAAACGGCCAGTCACGAATATTAAGGAACTGGACCTtg > 1:1224415/1‑69 (MQ=255)
aCGATAGTCAGCGTAATGCTGGTAGCTGCACCAAACGGCCAGTCACGAATATTAAGGAACTGGACCTtg > 1:1718994/1‑69 (MQ=255)
aTAGTCAGCGTAATGCTGGTAGCTGCACCAAACGGCCAGTCACGAATATTAAGGAACTGGACCTtgat < 1:2443604/68‑1 (MQ=255)
cAGCGTAATGCTGGTAGCTGCACCAAACGGCCAGTCACGAATATTAAGGAACTGGACCTTGATGACGt < 1:996980/68‑1 (MQ=255)
aTGCTGGTAGCTGCACCAAACGGCCAGTCACGAATATTAAGGAACTGGACCTtgatg > 1:3329861/1‑57 (MQ=255)
aTGCTGGTAGCTGCACCAAACGGCCAGTCACGAATATTAAGGAACTGGACCTTGATGACGTTACCGATc > 1:710423/1‑69 (MQ=255)
gCTGGTAGCTGCACCAAACGGCCAGTCACGAATATTAAGGAACTGGACCTTGATGACGTTACCGAt > 1:1583644/1‑66 (MQ=255)
gCTGGTAGCTGCACCAAACGGCCAGTCACGAATATTAAGGAACTGGACCTTGATGACGTTACCGATc > 1:1359435/1‑67 (MQ=255)
gCTGGTAGCTGCACCAAACGGCCAGTCACGAAAATTAAGGCACTGGACCTTGATGACGTTAGCGAt > 1:148861/1‑66 (MQ=255)
gCTGGTAGCCGCACCAAACGGCCAGTCACGAATATTAAGGAACTGGACCTTGATGACGTTACCGATc > 1:1540217/1‑67 (MQ=255)
tGCACCAAACGGCCAGTCACGAATATTGAGGAACTTTACCTTGATGACGTTACCGATCAGCAGGtttt < 1:2581084/68‑1 (MQ=255)
tGCACCAAACGGCCAGTCACGAATATTGAGGAACTGTACCTTGATGACGTTACCGATCAGCAGGtttt < 1:3141984/68‑1 (MQ=255)
tGCACCAAACGGCCAGTCACGAATATTGAGGAACTGTACCTTGATGACGTTACCGATCAGCAGGtttt < 1:246672/68‑1 (MQ=255)
tGCACCAAACGGCCAGTCACGAATATTGAGGAACTGTACCTTGATGACGTTACCGATCAGCAGGtttt < 1:2853360/68‑1 (MQ=255)
tGCACCAAACGGCCAGTCACGAATATTGAGGAACTGTACCTTGATGACGTTACCGATCAGCAGGtttt < 1:243389/68‑1 (MQ=255)
tGCACCAAACGGCCAGTCACGAATATTGAGGAACTGTACCTTGATGACGTTACCGATCAGCAGGtttt < 1:2584195/68‑1 (MQ=255)
tGCACCAAACGGCCAGTCACGAATATTGAGGAACTGTACCTTGATGACGTTACCGATCAGCAGGtttt < 1:349257/68‑1 (MQ=255)
tGCACCAAACGGCCAGTCACGAATATTGAGGAACTGTACCTTGATGACGTTACCGATCAGCAGGtttt < 1:274624/68‑1 (MQ=255)
tGCACCAAACGGCCAGTCACGAATATTGAGGAACTGTACCTTGATGACGTTACCGATCAGCAGGtttt < 1:46268/68‑1 (MQ=255)
tGCACCAAACGGCCAGTCACGAATATTGAGGAACTGTACCTTGATGACGTTACCGATCAGCAGGtttt < 1:579471/68‑1 (MQ=255)
tGCACCAAACGGCCAGTCACGAATATTGAGGAACTGTACCTTGATGACGTTACCGATCAGCAGGtttt < 1:2152580/68‑1 (MQ=255)
tGCACCAAACGGCCAGTCACGAATATTGAGGAACTGTACCTTGATGACGTTACCGATCAGCAGGtttt < 1:2128788/68‑1 (MQ=255)
tGCACCAAACGGCCAGTCACGAATATTGAGGAACTGTACCTTGATGACGTTACCGATCAGCAGGtttt < 1:202234/68‑1 (MQ=255)
tGCACCAAACGGCCAGTCACGAATATTGAGGAACTGTACCTTGATGACGTTACCGATCAGCAGGtttt < 1:768763/68‑1 (MQ=255)
tGCACCAAACGGCCAGTCACGAATATTGAGGAACTGTACCTTGATGACGTTACCGATCAGCAGGtttt < 1:780524/68‑1 (MQ=255)
tGCACCAAACGGCCAGTCACGAATATTGAGGAACTGTACCTTGATGACGTTACCGATCAGCAGGtttt < 1:1855843/68‑1 (MQ=255)
tGCACCAAACGGCCAGTCACGAATATTGAGGAACTGTACCTTGATGACGTTACCGATCAGCAGGtttt < 1:179824/68‑1 (MQ=255)
tGCACCAAACGGCCAGTCACGAATATTGAGGAACTGTACCTTGATGACGTTACCGATCAGCAGGtttt < 1:1459685/68‑1 (MQ=255)
tGCACCAAACGGCCAGTCACGAATATTGAGGAACTGTACCTTGATGACGTTACCGATCAGCAGGtttt < 1:1388872/68‑1 (MQ=255)
tGCACCAAACGGCCAGTCACGAATATTGAGGAACTGTACCTTGATGACGTTACCGATCAGCAGGtttt < 1:980477/68‑1 (MQ=255)
gCCAGTCACGAATATTGAGGAACTGTACCTTGATGACGTTACCGATCAGCAGGtttt < 1:1769707/57‑1 (MQ=255)
ccAGTCACGAATATTGAGGAACTGTACCTTGATGACGTTACCGATCAGCAGGTTTTTCGCACCGCCCAt < 1:295305/69‑1 (MQ=255)
ccAGTCACGAATATTAAGGAACTGGACCTTGATGACGTTACCGATCAGCAGGTTTTTCGCACCGCCCAt < 1:3336006/69‑1 (MQ=255)
cAGTCACGAATATTGAGGAACTGTACCTTGATGACGTTACCGATCAGCAGGTTTTTCGCACCGCCCAt < 1:1154501/68‑1 (MQ=255)
tCACGAATATTGAGCAACTGTACCTTGATGACGTTACCGATCAGCAGGtttt < 1:2964990/52‑1 (MQ=255)
cACGAATATTAAGGAACTGGACCTTGATGACGTTACCGATCAGCAGGTTTTTCGCACCGCCCATCAGGt > 1:2602473/1‑69 (MQ=255)
cACGAATATTAAGGAACTGGACCTTGATGACGTTACCGATCAGCAGGTTTTTCGCACCGCCCATCAGGt > 1:249945/1‑69 (MQ=255)
cACGAATATTAAGGAACTGGACCTTGATGACGTTACCGATCAGCAGGTTTTTCGCACCGCCCATCAGGt > 1:2381597/1‑69 (MQ=255)
cACGAATATTAAGGAACTGGACCTTGATGACGTTACCGATCAGCAGGTTTTTCGCACCGCCCATCAGGt > 1:3100910/1‑69 (MQ=255)
gAATATTAAGGAACTGGACCTTGATGACGTTACCGATCAGCAGGTTTTTCGCACCGCCCATCAGGTCg < 1:2284584/68‑1 (MQ=255)
gAATATTAAGGAACTGGACCTTGATGACGTTACCGATCAGCAGGTTTTTCGCACCGCCCATCAGGTCg < 1:2322956/68‑1 (MQ=255)
gAATATTAAGGAACTGGACCTTGATGACGTTACCGATCAGCAGGTTTTTCGCACCGCCCATCAGGTCg < 1:1970421/68‑1 (MQ=255)
gAATATTAAGGAACTGGACCTTGATGACGTTACCGATCAGCAGGTTTTTCGCACCGCCCATCAGGTCg < 1:2345247/68‑1 (MQ=255)
gAATATTAAGGAACTGGACCTTGATGACGTTACCGATCAGCAGGTTTTTCGCACCGCCCATCAGGTCg < 1:2682553/68‑1 (MQ=255)
gAATATTAAGGAACTGGACCTTGATGACGTTACCGATCAGCAGGTTTTTCGCACCGCCCATCAGGTCg < 1:1859984/68‑1 (MQ=255)
gAATATTAAGGAACTGGACCTTGATGACGTTACCGATCAGCAGGTTTTTCGCACCGCCCATCAGGTCg < 1:3244024/68‑1 (MQ=255)
gAATATTAAGGAACTGGACCTTGATGACGTTACCGATCAGCAGGTTTTTCGCACCGCCCATCAGGTCg < 1:3143075/68‑1 (MQ=255)
gAATATTAAGGAACTGGACCTTGATGACGTTACCGATCAGCAGGTTTTTCGCACCGCCCATCAGGTCg < 1:2443325/68‑1 (MQ=255)
gAATATTAAGGAACTGGACCTTGATGACGTTACCGATCAGCAGGTTTTTCGCACCGCCCATCAGGTCg < 1:2448113/68‑1 (MQ=255)
gAATATTAAGGAACTGGACCTTGATGACGTTACCGATCAGCAGGTTTTTCGCACCGCCCATCAGGTCg < 1:2886690/68‑1 (MQ=255)
gAATATTAAGGAACTGGACCTTGATGACGTTACCGATCAGCAGGTTTTTCGCACCGCCCATCAGGTCg < 1:806390/68‑1 (MQ=255)
gAATATTAAGGAACTGGACCTTGATGACGTTACCGATCAGCAGGTTTTTCGCACCGCCCATCAGGTCg < 1:1838790/68‑1 (MQ=255)
gAATATTAAGGAACTGGACCTTGATGACGTTACCGATCAGCAGGTTTTTCGCACCGCCCATCAGGACg < 1:870835/68‑1 (MQ=255)
aaTATTAAGGAACTGGACCTTGATGACGTTACCGATCAGCAGGTTTTTCGc < 1:1266669/51‑1 (MQ=255)
aaTATTAAGGAACTGGACCTTGATGACGTTACCGATCAGCAGGTTTTTCGc < 1:2377603/51‑1 (MQ=255)
aaTATTAAGGAACTGGACCTTGATGACGTTACCGATCAGCAGGTTTTTCGc < 1:2415294/51‑1 (MQ=255)
atatTGAGGAACTGTACCTTGATGACGTTACCGATCAGCAGGtttt < 1:2028891/46‑1 (MQ=255)
tatTAAGGAACTGGACCTTGATGACGTTACCGATCAGCAGGTTTTTCGCACCGCCCATCAGGTCGGATa < 1:1972669/69‑1 (MQ=255)
tatTAAGGAACTGGACCTTGATGACGTTACCGATCAGCAGGTTTTTCGCACCGCCCATCAGGTCGGATa < 1:1691765/69‑1 (MQ=255)
tatTAAGGAACTGGACCTTGATGACGTTACCGATCAGCAGGTTTTTCGCACCGCCCATCAGGTCGGATa < 1:9963/69‑1 (MQ=255)
tatTAAGGAACTGGACCTTGATGACGTTACCGATCAGCAGGTTTTTCGCACCGCCCATCAGGTCGGATa < 1:2776768/69‑1 (MQ=255)
ttAAGGAACTGGACCTTGATGACGTTACCGATCAGCAGGTTTTTCGCACCGCCCATCAGGTCGGAt > 1:1277580/1‑66 (MQ=255)
ttAAGGAACTGGACCTTGATGACGTTACCGATCAGCAGGTTTTTCGCACCGCCCATCAGGTCGGATa > 1:446063/1‑67 (MQ=255)
gAACTGGACCTTGATGACGTTACCGATCAGCAGGTTTTTCGCACCGCCCATCAGGTCGGATACATAg > 1:2827291/1‑67 (MQ=255)
gAACTGGACCTTGATGACGTTACCGATCAGCAGGTTTTTCGCACCGCCCATCAGGTCGGATACATAg > 1:2823522/1‑67 (MQ=255)
aaCTGTACCTTGATGACGTTACCGATCAGCAGGtttt < 1:2664159/37‑1 (MQ=255)
|
TACGATAGTCAGCGTAATGCTGGTAGCTGCACCAAACGGCCAGTCACGAATATTAAGGAACTGGACCTTGATGACGTTACCGATCAGCAGGTTTTTCGCACCGCCCATCAGGTCGGATACATAG > minE/762941‑763064
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
