Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I0 R1
|
4577 |
57.4 |
3436498 |
77.7% |
2670158 |
63.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
804,215 |
G→A |
28.2% |
L312L (TTG→TTA) |
dhaR → |
predicted DNA‑binding transcriptional regulator, dihydroxyacetone |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 804,215 | 0 | G | A | 28.2%
| 78.7
/ 29.7
| 74 | L312L (TTG→TTA) | dhaR | predicted DNA‑binding transcriptional regulator, dihydroxyacetone |
| Reads supporting (aligned to +/- strand): ref base G (29/24); new base A (8/13); total (37/37) |
| Fisher's exact test for biased strand distribution p-value = 3.02e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
AACGCAGGGAACCAGCTTTATTTTGTTGCTCCATCCTGTGGAACAGATGCGGCAGTTGATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCATATGCCACAGGACGATCCGCAAACCCG > minE/804158‑804283
|
aaCGCAGGGAACCAGCTTTATTTTGTTGCTCCATCCTGTGGAACAGATGCGGCAGTTGATGACCAGTCa > 1:1210187/1‑69 (MQ=255)
aaCGCAGGGAACCAGCTTTATTTTGTTGCTCCATCCTGTGGAACAGATGCGGCAGTTGATGACCAGTCa > 1:2727226/1‑69 (MQ=255)
aaCGCAGGGAACCAGCTTTATTTTGTTGCTCCATCCTGTGGAACAGATGCGGCAGTTGATGACCAGTCa > 1:3190067/1‑69 (MQ=255)
tttATTTTGTTGCTCCATCCTGTGGAACAGATGCTGCAGTTGATGACCAGTCAATTAGGAAAAGTCAGc < 1:1867892/69‑1 (MQ=255)
tttATTTTGTTGCTCCATCCTGTGGAACAGATGCGGCAGTTGATGACCAGTCAATTAGGAAAAGTCAGc < 1:994069/69‑1 (MQ=255)
tttATTTTGTTGCTCCATCCTGTGGAACAGATGCGGCAGTTGATGACCAGTCAATTAGGAAAAGTCAGc < 1:2750352/69‑1 (MQ=255)
tttATTTTGTTGCTCCATCCTGTGGAACAGATGCGGCAGTTGATGACCAGTCAATTAGGAAAAGTCAGc < 1:1004082/69‑1 (MQ=255)
tttATTTTGTTGCTCCATCCTGTGGAACAGATGCGGCAGTTGATGACCAGTCAATTAGGAAAAGTCAGc < 1:2711484/69‑1 (MQ=255)
tttATTTTGTTGCTCCATCCTGTGGAACAGATGCGGCAGTTGATGACCAGTCAATTAGGAAAAGTCAGc < 1:263358/69‑1 (MQ=255)
tttATTTTGTTGCTCCATCCTGTGGAACAGATGCGGCAGTTGATGACCAGTCAATTAGGAAAAGTCAGc < 1:2463569/69‑1 (MQ=255)
tttATTTTGTTGCTCCATCCTGTGGAACAGATGCGGCAGTTGATGACCAGTCAATTAGGAAAAGTCAGc < 1:302274/69‑1 (MQ=255)
tttATTTTGTTGCTCCATCCTGTGGAACAGATGCGGCAGTTGATGACCAGTCAATTAGGAAAAGTCAGc < 1:3031892/69‑1 (MQ=255)
tttATTTTGTTGCTCCATCCTGTGGAACAGATGCGGCAGTTGATGACCAGTCAATTAGGAAAAGTCAGc < 1:2176416/69‑1 (MQ=255)
tttATTTTGTTGCTCCATCCTGTGGAACAGATGCGGCAGTTGATGACCAGTCAATTAGGAAAAGTCAGc < 1:1737134/69‑1 (MQ=255)
tttATTTTGTTGCTCCATCCTGTGGAACAGATGCGGCAGTTGATGACCAGTCAATTAGGAAAAGTCAGc < 1:914781/69‑1 (MQ=255)
tttATTTTGTTGCTCCATCCTGTGGAACAGATGCGGCAGTTGATGACCAGTCAATTAGGAAAAGTCAGc < 1:1401142/69‑1 (MQ=255)
tttATTTTGTTGCTCCATCCTGTGGAACAGATGCGGCAGTTGATGACCAGTCAATTAGGAAAAGTCAGc < 1:378590/69‑1 (MQ=255)
tttATTTTGTTGCTCCATCCTGTGGAACAGATGCGGCAGTTGATGACCAGTCAATTAGGAAAAGTCAGc < 1:1519781/69‑1 (MQ=255)
tttATTTTGTTGCTCCATCCTGTGGAACAGATGCGGCAGTTGATGACCAGTCAATTAGGAAAAGTCAGc < 1:1442502/69‑1 (MQ=255)
tttATCTTGTTGCTCCATCCTGTGGAACAGATGCGGCAGTTGATGACCAGTCAATTAGGAAAAGTCAGc < 1:2230800/69‑1 (MQ=255)
ttttGTTGCTCCATCCTGTGGAACAGATGCGGCAGTTGATGACCAGTCAATTAGGAAAAGTCAGCCAt < 1:2871076/68‑1 (MQ=255)
ttttGTTGCTCCATCCTGTGGAACAGATGCGGCAGTTGATGACCAGTCAATTAGGAAAAGTCAGCCAt < 1:3070977/68‑1 (MQ=255)
tCCTGTGGAACAGATGCGGCAGTTGATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCatat > 1:2836129/1‑69 (MQ=255)
tCCTGTGGAACAGATGCGGCAGTTGATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCatat > 1:3210171/1‑69 (MQ=255)
tCCTGTGGAACAGATGCGGCAGTTGATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCatat > 1:673834/1‑69 (MQ=255)
ggAACAGATGCGGCAGTTAATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCATATGCcac > 1:1592483/1‑68 (MQ=255)
ggAACAGATGCGGCAGTTAATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCATATGCcac > 1:79243/1‑68 (MQ=255)
ggAACAGATGCGGCAGTTAATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCATATGCcac > 1:55910/1‑68 (MQ=255)
ggAACAGATGCGGCAGTTAATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCATATGCcac > 1:1749655/1‑68 (MQ=255)
ggAACAGATGCGGCAGTTAATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCATATGCcac > 1:1624386/1‑68 (MQ=255)
ggAACAGATGCGGCAGTTAATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCATATGCcac > 1:1572253/1‑68 (MQ=255)
ggAACAGATGCGGCAGTTAATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCATATGCca > 1:577448/1‑67 (MQ=255)
ggAACAGATGCGGCAGTTAATGACCAGTCAATTAGGAAAACTCAGCCATAca > 1:3159996/1‑51 (MQ=255)
gAACAGATGCGGCAGTTAATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCATATGCcac < 1:3080514/67‑1 (MQ=255)
gAACAGATGCGGCAGTTAATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCATATGCcac < 1:2896398/67‑1 (MQ=255)
gAACAGATGCGGCAGTTAATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCATATGCcac < 1:58742/67‑1 (MQ=255)
gAACAGATGCGGCAGTTAATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCATATGCcac < 1:489031/67‑1 (MQ=255)
gAACAGATGCGGCAGTTAATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCATATGCcac < 1:3218454/67‑1 (MQ=255)
gAACAGATGCGGCAGTTAATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCATATGCcac < 1:3256244/67‑1 (MQ=255)
gAACAGATGCGGCAGTTAATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCATATGCcac < 1:2736517/67‑1 (MQ=255)
gAACAGATGCGGCAGTTAATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCATATGCcac < 1:1609012/67‑1 (MQ=255)
gAACAGATGCGGCAGTTAATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCATATGCcac < 1:1178353/67‑1 (MQ=255)
gAACAGATGCGGCAGTTAATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCATATGCcac < 1:1441713/67‑1 (MQ=255)
gAACAGATGCGGCAGTTAATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCATATGCcac < 1:2780349/67‑1 (MQ=255)
gAACAGATGCGGCAGTTAATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCATATGCcac < 1:2270519/67‑1 (MQ=255)
gAACAGATGAGGCAGTTAATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCATATGCcac < 1:1297816/67‑1 (MQ=255)
cAGATGCGGCAGTTGATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCa > 1:344893/1‑56 (MQ=255)
cAGATGCGGCAGTTGATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCa > 1:2846378/1‑56 (MQ=255)
cAGATGCGGCAGTTGATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCa > 1:1413581/1‑56 (MQ=255)
cAGATGCGGCAGTTGATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCa > 1:744420/1‑56 (MQ=255)
cAGATGCGGCAGTTGATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCa > 1:721968/1‑56 (MQ=255)
cAGATGCGGCAGTTGATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCa > 1:1415969/1‑56 (MQ=255)
cAGATGCGGCAGTTGATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCa > 1:2710462/1‑56 (MQ=255)
cAGATGCGGCAGTTGATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCa > 1:1449754/1‑56 (MQ=255)
cAGATGCGGCAGTTGATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCa > 1:1455174/1‑56 (MQ=255)
cAGATGCGGCAGTTGATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCa > 1:1461410/1‑56 (MQ=255)
cAGATGCGGCAGTTGATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCa > 1:1569046/1‑56 (MQ=255)
cAGATGCGGCAGTTGATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCa > 1:2339402/1‑56 (MQ=255)
cAGATGCGGCAGTTGATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCa > 1:3337754/1‑56 (MQ=255)
cAGATGCGGCAGTTGATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCa > 1:3259775/1‑56 (MQ=255)
cAGATGCGGCAGTTGATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCa > 1:2390825/1‑56 (MQ=255)
cAGATGCGGCAGTTGATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCa > 1:1930993/1‑56 (MQ=255)
cAGATGCGGCAGTTGATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCa > 1:1961480/1‑56 (MQ=255)
cAGATGCGGCAGTTGATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCa > 1:1977147/1‑56 (MQ=255)
cAGATGCGGCAGTTGATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCa > 1:3111075/1‑56 (MQ=255)
cAGATGCGGCAGTTGATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCa > 1:3097932/1‑56 (MQ=255)
cAGATGCGGCAGTTGATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCa > 1:2237195/1‑56 (MQ=255)
cAGATGCGGCAGTTGATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCa > 1:2243870/1‑56 (MQ=255)
cAGATGCGGCAGTTGATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCa > 1:3006481/1‑56 (MQ=255)
gCGGCAGTTGATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCa < 1:3253960/51‑1 (MQ=255)
gCGGCAGTTGATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCa < 1:550093/51‑1 (MQ=255)
gCGGCAGTTGATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCa < 1:2079079/51‑1 (MQ=255)
gCGGCAGTTGATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCa < 1:3119940/51‑1 (MQ=255)
gCGGCAGTTGATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCa < 1:785386/51‑1 (MQ=255)
gatgaCCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCATATGCCACAGGACGATCCGCAAACccg > 1:477455/1‑69 (MQ=255)
|
AACGCAGGGAACCAGCTTTATTTTGTTGCTCCATCCTGTGGAACAGATGCGGCAGTTGATGACCAGTCAATTAGGAAAAGTCAGCCATACCTTCGCTCATATGCCACAGGACGATCCGCAAACCCG > minE/804158‑804283
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
