Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A3 F50 I3 R1	283	58.3	1819865	98.8%	1798026	150.1

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,046,051	A→G	V632A (GTA→GCA)	gfcD ←	putative O‑antigen capsule production periplasmic protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,046,051	0	A	G	100.0%	187.2 / NA	56	V632A (GTA→GCA)	gfcD	putative O‑antigen capsule production periplasmic protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (27/29); total (27/29)

GTGACAGCATTTGTCCACCATCACGCGTCAATGGTGTCCACGAAACCACCGCGCGGTTGCGGTTAGGTCCAATGGTCATCAAGTCGAATGGAATCGAGATATAAAAACCTTTACTAAAGCCGCCTTCGCCGTAGTCATCTTTAGATACGTTACTGATTGCCGCCCATACCCCTACCGCCACGCCGCTGTCAAAGCGTTTGGCGACGTCGATCGTTGCGCCTTTATCTTTTGCCAGATATTGCCCAACGCTAAGTTTCATCAGTACGCCATTGAGCGTCGGCGGGTTCCAGTAAG  >  NC_000913/1045905‑1046198

gTGACAGCATTTGTCCACCATCACGCGTCAATGGTGTCCACGAAACCACCGCGCGGTTGCGGTTAGGTCCAATGGTCATCAAGTCGAATGGAATCGAGATATAAAAACCTTTACTAAAGCCGCCTTCGCCGTAGTCATCTTTAGATGCGtt                                                                                                                                                 >  1:505975/1‑151 (MQ=255)

   aCAGCATTTGTCCACCATCACGCGTCAATGGTGTCCACGAAACCACCGCGCGGTTGCGGTTAGGTCCAATGGTCATCAAGTCGAATGGAATCGAGATATAAAAACCTTTACTAAAGCCGCCTTCGCCGTAGTCATCTTTAGATGCGTTACt                                                                                                                                              <  2:779641/151‑1 (MQ=255)

   aCAGCATTTGTCCACCATCACGCGTCAATGGTGTCCACGAAACCACCGCGCGGTTGCGGTTAGGTCCAATGGTCATCAAGTCGAATGGAATCGAGATATAAAAACCTTTACTAAAGCCGCCTTCGCCGTAGTCATCTTTAGATGCGTTACt                                                                                                                                              <  1:252135/151‑1 (MQ=255)

       cATTTGTCCACCATCACGCGTCAATGGTGTCCACGAAACCACCGCGCGGTTGCGGTTAGGTCCAATGGTCATCAAGTCGAATGGAATCGAGATATAAAAACCTTTACTAAAGCCGCCTTCGCCGTAGTCATCTTTAGATGCGTTACTGAtt                                                                                                                                          >  1:160441/1‑151 (MQ=255)

       cATTTGTCCACCATCACGCGTCAATGGTGTCCACGAAACCACCGCGCGGTTGCGGTTAGGTCCAATGGTCATCAAGTCGAATGGAATCGAGATATAAAAACCTTTACTAAAGCCGCCTTCGCCGTAGTCATCTTTAGATGCGTTACTGAtt                                                                                                                                          <  1:691180/151‑1 (MQ=255)

        aTTTGTCCACCATCACGCGTCAATGGTGTCCACGAAACCACCGCGCGGTTGCGGTTAGGTCCAATGGTCATCAAGTCGAATGGAATCGAGATATAAAAACCTTTACTAAAGCCGCCTTCGCCGTAGTCATCTTTAGATGCGTTACTGATTg                                                                                                                                         >  2:1625/1‑151 (MQ=255)

        aTTTGTCCACCATCACGCGTCAATGGTGTCCACGAAACCACCGCGCGGTTGCGGTTAGGTCCAATGGTCATCAAGTCGAATGGAATCGAGATATAAAAACCTTTACTAAAGCCGCCTTCGCCGTAGTCATCTTTAGATGCGTTACTGATTg                                                                                                                                         <  2:353988/151‑1 (MQ=255)

          ttGTCCACCATCACGCGTCAATGGTGTCCACGAAACCACCGCGCGGTTGCGGTTAGGTCCAATGGTCATCAAGTCGAATGGAATCGAGATATAAAAACCTTTACTAAAGCCGCCTTCGCCGTAGTCATCTTTAGATGCGTTACTGATTgc                                                                                                                                        <  2:690334/150‑1 (MQ=255)

                accaTCACGCGTCAATGGTGTCCACGAAACCACCGCGCGGTTGCGGTTAGGTCCAATGGTCATCAAGTCGAATGGAATCGAGATATAAAAACCTTTACTAAAGCCGCCTTCGCCGTAGTCATCTTTAGATGCGTTACTGATTGCCGCCCAt                                                                                                                                 >  2:86692/1‑151 (MQ=255)

                  caTCACGCGTCAATGGTGTCCACGAAACCACCGCGCGGTTGCGGTTAGGTCCAATGGTCATCAAGTCGAATGGAATCGAGATATAAAAACCTTTACTAAAGCCGCCTTCGCCGTAGTCATCTTTAGATGCGTTACTGATTGCCGCCCATAc                                                                                                                               <  1:394869/151‑1 (MQ=255)

                      aCGCGTCAATGGTGTCCACGAAACCACCGCGCGGTTGCGGTTAGGTCCAATGGTCATCAAGTCGAATGGAATCGAGATATAAAAACCTTTACTAAAGCCGCCTTCGCCGTAGTCATCTTTAGATGCGTTACTGATTGCCGCCCATACCCCt                                                                                                                           <  2:549324/151‑1 (MQ=255)

                       cgcgTCAATGGTGTCCACGAAACCACCGCGCGGTTGCGGTTAGGTCCAATGGTCATCAAGTCGAATGGAATCGAGATATAAAAACCTTTACTAAAGCCGCCTTCGCCGTAGTCATCTTTAGATGCGTTACTGATTGCCGCCCATACCCCt                                                                                                                           >  2:412140/1‑150 (MQ=255)

                          gTCAATGGTGTCCACGAAACCACCGCGCGGTTGCGGTTAGGTCCAATGGTCATCAAGTCGAATGGAATCGAGATATAAAAACCTTTACTAAAGCCGCCTTCGCCGTAGTCATCTTTAGATGCGTTACTGATTGCCGCCCATACCCCTACCg                                                                                                                       >  2:436916/1‑151 (MQ=255)

                                ggTGTCCACGAAACCACCGCGCGGTTGCGGTTAGGTCCAATGGTCATCAAGTCGAATGGAATCGAGATATAAAAACCTTTACTAAAGCCGCCTTCGCCGTAGTCATCTTTAGATGCGTTACTGATTGCCGCCCATACCCCTACCGCCAcgc                                                                                                                 >  2:41288/1‑151 (MQ=255)

                                     ccACGAAACCACCGCGCGGTTGCGGTTAGGTCCAATGGTCATCAAGTCGAATGGAATCGAGATATAAAAACCTTTACTAAAGCCGCCTTCGCCGTAGTCATCTTTAGATGCGTTACTGATTGCCGCCCATCCCCCTACCGCCACGCCGCTg                                                                                                            <  2:364427/151‑1 (MQ=255)

                                      cACGAAACCACCGCGCGGTTGCGGTTAGGTCCAATGGTCATCAAGTCGAATGGAATCGAGATATAAAAACCTTTACTAAAGCCGCCTTCGCCGTAGTCATCTTTAGATGCGTTACTGATTGCCGCCCATACCCCTACCGCCACGCCGCTGt                                                                                                           >  1:728694/1‑151 (MQ=255)

                                                ccGCGCGGTTGCGGTTAGGTCCAATGGTCATCAAGTCGAATGGAATCGAGATATAAAAACCTTTACTAAAGCCGCCTTCGCCGTAGTCATCTTTAGATGCGTTACTGATTGCCGCCCATACCCCTACCGCCACGCCGCTGTCAAAGCGtt                                                                                                  <  1:304335/150‑1 (MQ=255)

                                                      ggttgcggttAGGTCCAATGGTCATCAAGTCGAATGGAATCGAGATATAAAAACCTTTACTAAAGCCGCCTTCGCCGTAGTCATCTTTAGATGCGTTACTGATTGCCGCCCATCCCCCTACCGCCACGCCGCTGTCAAAGCGTTTGGCGAc                                                                                           <  1:794908/151‑1 (MQ=255)

                                                              ttAGGTCCAATGGTCATCAAGTCGAATGGAATCGAGATATAAAAACCTTTACTAAAGCCGCCTTCGCCGTAGTCATCTTTAGATGCGTTACTGATTGCCGCCCATACCCCTACCGCCACGCCGCTGTCAAAGCGTTTGGCGACGTCGATc                                                                                    <  1:599389/150‑1 (MQ=255)

                                                                    ccAATGGTCATCAAGTCGAATGGAATCGAGATATAAAAACCTTTACTAAAGCCGCCTTCGCCGTAGTCATCTTTAGATGCGTTACTGATTGCCGCCCATACCCCTACCGCCACGCCGCTGTCAAAGCGTTTGGCGACGTCGATCGTTgcgc                                                                             >  2:589186/1‑151 (MQ=255)

                                                                      aaTGGTCATCAAGTCGAATGGAATCGAGATATAAAAACCTTTACTAAAGCCGCCTTCGCCGTAGTCATCTTTAGATGCGTTACTGATTGCCGCCCATACCCCTACCGCCACGCCGCTGTCAAAGCGTTTGGCGACGTCGATCGTTGCGCCt                                                                           >  2:897447/1‑151 (MQ=255)

                                                                          gTCATAAAGTCGAATGGAATCGAGATATAAAAACCTTTACTAAAGCCGCCTTCGCCGTAGTCATCTTTAGATGCGTTACTGATTGCAGCCCATACCCCTACCGCCACGCCGCTGTCAAAGCGTTTGGCGACGTCGATCGTTGCGCCTTTAt                                                                       >  2:514405/1‑151 (MQ=255)

                                                                                aaGTCGAATGGAATCGAGATATAAAAACCTTTACTAAAGCCGCCTTCGCCGTAGTCATCTTTAGATGCGTTCCTGATTGCCGCCCATCCCCCTACCGCCACGCCGCTGTCAAAGCGTTTGGCGACGTCGATCGTTGCGCCTTTATCTTTTg                                                                 <  1:784768/151‑1 (MQ=255)

                                                                                aaGTCAAATGGAATCGAGATATAAAAACCTTTACTAAAGCCGCCTTCGCCGTAGTCATCTTTAGATGCGTTACTGATTGCCGCCCATCCCCCTACCGCCACGCCGCTGTCAAAGCGTTTGGCGACGTCGATCGTTGCGCCTTTATCtt                                                                    <  1:518392/148‑1 (MQ=255)

                                                                                    cGAATGGAATCGAGATATAAAAACCTTTACTAAAGCCGCCTTCGCCGTAGTCATCTTTAGATGCGTTACTGATTGCCGCCCATACCCCTACCGCCACGCCGCTGTCAAAGCGTTTGGCGACGTCGATCGTTGCGCCTTTATCTTTTGcc                                                               >  1:87737/1‑149 (MQ=255)

                                                                                     gAATGGAATCGAGATATAAAAACCTTTACTAAAGCCGCCTTCGCCGTAGTCATCTTTAGATGCGTTACTGATTGCCGCCCATACCCCTACCGCCACGCCGCTGTCAAAGCGTTTGGCGACGTCGATCGTTGCGCCTTTATCTTTTGcc                                                               >  1:262969/1‑148 (MQ=255)

                                                                                     gAATGGAATCGAGATATAAAAACCTTTACTAAAGCCGCCTTCGCCGTAGTCATCTTTAGATGCGTTACTGATTGCCGCCCATACCCCTACCGCCACGCCGCTGTCAAAGCGTTTGGCGACGTCGATCGTTGCGCCTTTATCTTTTGCCa                                                              <  2:657476/149‑1 (MQ=255)

                                                                                      aaTGGAATCGAGATATAAAAACCTTTACTAAAGCCGCCTTCGCCGTAGTCATCTTTAGATGCGTTACTGATTGCCGCCCATACCCCTACCGCCACGCCGCTGTCAAAGCGTTTGGCGACGTCGATCGTTGCGCCTTTATCTTTTGCCAGat                                                           <  2:160418/151‑1 (MQ=255)

                                                                                          gAATCGAGATATAAAAACCTTTACTAAAGCCGCCTTCGCCGTAGTCATCTTTAGATGCGTTACTGATTGCCGCCCATACCCCTACCGCCACGCCGCTGTCAAAGCGTTTGGCGACGTCGATCGTTGCGCCTTTATCTTTTGCCAGATATTg                                                       >  2:553970/1‑151 (MQ=255)

                                                                                                 gaTATAAAACCCTTTACTAAAGCCGCCTTCGCCGTAGTCATCTTTAGATGCGTTACTGATTGCCGCCCATACCCCTACCGCCACGCCGCTGTCAAAGCGTTTGGCGACGTCGATCGTTGCGCCTTTATCTTTTGCCAGATATTGCCCAAc                                                 <  1:370016/150‑1 (MQ=255)

                                                                                                    ataAAAACCTTTACTAAAGCCGCCTTCGCCGTAGTCATCTTTAGATGCGTTACTGATTGCCGCCCATACCCCTACCGCCACGCCGCTGTCAAAGCGTTTGGCGACGTCGATCGTTGCGCCTTTATCTTTTGCCAGATATTGCCCAACGCt                                              >  2:533540/1‑150 (MQ=255)

                                                                                                    ataAAAACCTTTACTAAAGCCGCCTTCGCCGTAGTCATCTTTAGATGCGTTACTGATTGCCGCCCATACCCCTACCGCCACGCCGCTGTCAAAGCGTTTGGCGACGTCGATCGTTGCGCCTTTATCTTTTGCCAGATATTGCCCAACGCt                                              >  2:645138/1‑150 (MQ=255)

                                                                                                      aaaaaCCTTTACTAAAGCCGCCTTCGCCGTAGTCATCTTTAGATGCGTTACTGATTGCCGCCCATACCCCTACCGCCACGCCGCTGTCAAAGCGTTTGGCGACGTCGATCGTTGCGCCTTTATCTTTTGCCAGATATTGCCCAACGCTaa                                            <  1:273188/150‑1 (MQ=255)

                                                                                                       aaaaCCTTTACTAAAGCCGCCTTCGCCGTAGTCATCTTTAGATGCGTTACTGATTGCCGCCCATACCCCTACCGCCACGCCGCTGTCAAAGCGTTTGGCGACGTCGATCGTTGCGCCTTTATCTTTTGCCAGATATTGCCCAACGCTAAGt                                          >  1:468121/1‑151 (MQ=255)

                                                                                                        aaaCCTTTACTAAAGCCGCCTTCGCCGTAGTCATCTTTAGATGCGTTACTGATTGCCGCCCATCCCCCTACCGCCACGCCGCTGTCAAAGCGTTTGGCGACGTCGATCGTTGCGCCTTTATCTTTTGCCAGATATTGCCCAACGCTAAGtt                                         <  2:763005/151‑1 (MQ=255)

                                                                                                        aaaCCTTTACTAAAGCCGCCTTCGCCGTAGTCATCTTTAGATGCGTTACTGATTGCCGCCCATACCCCTACCGCCACGCCGCTGTCAAAGCGTTTGGCGACGTCGATCGTTGCGCCTTTATCTTTTGCCAGATATTGCCCAACGCTAAGtt                                         >  2:186947/1‑151 (MQ=255)

                                                                                                          aCCTTTACTAAAGCCGCCTTCGCCGTAGTCATCTTTAGATGCGTTACTGATTGCCGCCCATACCCCTACCGCCACGCCGCTGTCAAAGCGTTTGGCGACGTCGATCGTTGCGCCTTTATCTTTTGCCAGATATTGCCCAACGCTAAGTTtc                                       >  1:637297/1‑151 (MQ=255)

                                                                                                           ccTTTGCTAAAGCCGCCTTCGCCGTAGTCTTCTTTAGATGCGTTTCTGTTTGCCGCCCATACCCCTACCGCCACGCCGCTGTCAAAGCGTTTGGCGACGTCGATCGTTGCGCCTTTATCTTTTGCCAGATATTGCCCAACGCTAAGTTtca                                      <  2:317656/151‑1 (MQ=255)

                                                                                                              ttACTAAAGCCGCCTTCGCCGTAGTCATCTTTAGATGCGTTACTGATTGCCGCCCATACCCCTACCGCCACGCCGCTGTCAAAGCGTTTGGCGACGTCGATCGTTGCGCCTTTATCTTTTGCCAGATATTGCCCAACGCTAAGTTtcatc                                    <  1:792521/150‑1 (MQ=255)

                                                                                                              ttACTAAAGCCGCCTTCGCCGTAGTCATCTTTAGATGCGTTACTGATTGCCGCCCATACCCCTACCGCCACGCCGCTGTCAAAGCGTTTGGCGACGTCGATCGTTGCGCCTTTATCTTTTGCCAGATATTGCCCAACGCTAAGTTtcat                                     <  1:415641/149‑1 (MQ=255)

                                                                                                               tACTAAAGCCGCCTTCGCCGTAGTCATCTTTAGATGCGTTACTGATTGCCGCCCATACCCCTACCGCCACGCCGCTGTCAAAGCGTTTGGCGACGTCGATCGTTGCGCCTTTATCTTTTGCCAGATATTGCCCAACGCTAAGTTtcatc                                    >  1:272707/1‑149 (MQ=255)

                                                                                                                 cTAAAGCCGCCTTCGCCGTAGTCATCTTTAGATGCGTTACTGATTGCCGCCCATACCCCTACCGCCACGCCGCTGTCAAAGCGTTTGGCGACGTCGATCGTTGCGCCTTTATCTTTTGCCAGATATTGCCCAACGCTAAGTTtcatca                                   <  2:124014/148‑1 (MQ=255)

                                                                                                                 cTAAAGCCGCCTTCGCCGTAGTCATCTTTAGATGCGTTACTGATTGCCGCCCATACCCCTACCGCCACGCCGCTGTCAAAGCGTTTGGCGACGTCGATCGTTGCGCCTTTATCTTTTGCCAGATATTGCCCAACGCTAAGTTTCATCAGt                                 >  2:32095/1‑150 (MQ=255)

                                                                                                                  tAAAGCCGCCTTCGCCGTAGTCATCTTTAGATGCGTTACTGATTGCCGCCCATACCCCTACCGCCACGCCGCTGTCAAAGCGTTTGGCGACGTCGATCGTTGCGCCTTTATCTTTTGCCAGATATTGCCCAACGCTAAGTTTCATCAGt                                 <  2:628087/149‑1 (MQ=255)

                                                                                                                  tAAAGCCGCCTTCGCCGTAGTCATCTTTAGATGCGTTACTGATTGCCGCCCATACCCCTACCGCCACGCCGCTGTCAAAGCGTTTGGCGACGTCGATCGTTGCGCCTTTATCTTTTGCCAGATATTGCCCAACGCTAAGTTTCATCAGTAc                               >  1:613310/1‑151 (MQ=255)

                                                                                                                   aaaGCCGCCTTCGCCGTAGTCATCTTTAGATGCGTTACTGATTGCCGCCCATACCCCTACCGCCACGCCGCTGTCAAAGCGTTTGGCGACGTCGATCGTTGCGCCTTTATCTTTTGCCAGATATTGCCCAACGCTAAGTTTCATCAGTACg                              >  2:684478/1‑151 (MQ=255)

                                                                                                                      gccgccTTCGCCGTAGTCATCTTTAGATGCGTTACTGATTGCCGCCCATACCCCTACCGCCACGCCGCTGTCAAAGCGTTTGGCGACGTCGATCGTTGCGCCTTTATCTTTTGCCAGATATTGCCCAACGCTAAGTTTCATCAGTACGcc                            <  1:1625/150‑1 (MQ=255)

                                                                                                                              cGCCGTAGTCATCTTTAGATGCGTTACTGATTGCCGCCCATACCCCTACCGCCACGCCGCTGTCAAAGCGTTTGGCGACGTCGATCGTTGCGCCTTTATCTTTTGCCAGATATTGCCCAACGCTAAGTTTCATCAGTACGCCATTGAg                      <  2:211937/148‑1 (MQ=255)

                                                                                                                              cGCCGTAGTCATCTTTAGATGCGTTACTGATTGCCGCCCATACCCCTACCGCCACGCCGCTGTCAAAGCGTTTGGCGACGTCGATCGTTGCGCCTTTATCTTTTGCCAGATATTGCCCAACGCTAAGTTTCATCAGTACGCCATTGAGCGt                   <  1:569405/151‑1 (MQ=255)

                                                                                                                                  gTAGTCATCTTTAGATGCGTTACTGATTGCCGCCCATACCCCTACCGCCACGCCGCTGTCAAAGCGTTTGGCGACGTCGATCGTTGCGCCTTTATCTTTTGCCAGATATTGCCCAACGCTAAGTTTCATCAGTACGCCATTGAGCGTcggc               <  2:229730/151‑1 (MQ=255)

                                                                                                                                  gTAGTCATCTTTAGATGCGTTACTGATTGCCGCCCATACCCCTACCGCCACGCCGCTGTCAAAGCGTTTGGCGACGTCGATCGTTGCGCCTTTATCTTTTGCCAGATATTGCCCAACGCTAAGTTTCATCAGTACGCCATTGAGCGTcggc               >  2:627730/1‑151 (MQ=255)

                                                                                                                                      tCATCTTTAGATGCGTTACTGATTGCCGCCCATACCCCTACCGCCACGCCGCTGTCAAAGCGTTTGGCGACGTCGATCGTTGCGCCTTTATCTTTTGCCAGATATTGCCCAACGCTAAGTTTCATCAGTACGCCATTGAGCGTCGGCGGGt           >  2:840224/1‑151 (MQ=255)

                                                                                                                                         tCTTTAGATGCGTTACTGATTGCCGCCCATCCCCCTACCGCCACGCCGCTGTCAAAGCGTTTGGCGACGTCGATCGTTGCGCCTTTATCTTTTGCCAGATATTGCCCAACGCTAAGTTTCATCAGTACGCCATTGAGCGTCGGCGGGtt          <  1:154171/149‑1 (MQ=255)

                                                                                                                                         tCTTTAGATGCGTTACTGATTGCCGCCCATACCCCTACCGCCACGCCGCTGTCAAAGCGTTTGGCGACGTCGATCGTTGCGCCTTTATCTTTTGCCAGATATTGCCCAACGCTAAGTTTCATCAGTACGCCATTGAGCGTCGGCGGGTTcc        >  2:584558/1‑151 (MQ=255)

                                                                                                                                          cTTTAGATGCGTTACTGATTGCCGCCCATACCCCTACCGCCACGCCGCTGTCAAAGCGTTTGGCGACGTCGATCGTTGCGCCTTTATCTTTTGCCAGATATTGCCCAACGCTAAGTTTCATCAGTACGCCATTGAGCGTCGGCGGGTTcc        >  1:481106/1‑150 (MQ=255)

                                                                                                                                               gATGCGTTACTGATTGCCGCCCATACCCCTACCGCCACGCCGCTGTCAAAGCGTTTGGCGACGTCGATCGTTGCGCCTTTATCTTTTGCCAGATATTGCCCAACGCTAAGTTTCATCAGTACGCCATTGAGCGTCGGCGGGTTCCAGTAAg  <  1:654980/151‑1 (MQ=255)

GTGACAGCATTTGTCCACCATCACGCGTCAATGGTGTCCACGAAACCACCGCGCGGTTGCGGTTAGGTCCAATGGTCATCAAGTCGAATGGAATCGAGATATAAAAACCTTTACTAAAGCCGCCTTCGCCGTAGTCATCTTTAGATACGTTACTGATTGCCGCCCATACCCCTACCGCCACGCCGCTGTCAAAGCGTTTGGCGACGTCGATCGTTGCGCCTTTATCTTTTGCCAGATATTGCCCAACGCTAAGTTTCATCAGTACGCCATTGAGCGTCGGCGGGTTCCAGTAAG  >  NC_000913/1045905‑1046198

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A