Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F50 I3 R1
|
283 |
58.3 |
1819865 |
98.8% |
1798026 |
150.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,873,099 |
2 bp→CT |
coding (238‑239/324 nt) |
ygbE ← |
DUF3561 family inner membrane protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,873,099 | 0 | T | C | 100.0%
| 180.1
/ NA
| 53 | D80G (GAC→GGC) | ygbE | DUF3561 family inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (30/23); total (30/23) |
| * | NC_000913 | 2,873,100 | 0 | C | T | 100.0%
| 195.5
/ NA
| 53 | D80N (GAC→AAC) | ygbE | DUF3561 family inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (30/23); total (30/23) |
TAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCATCAATGAATGCAGCGCAATCCCCACCACTACCGCGACGGGCATCAGCGCCAGAAAGAAAGGCCAGGTGTAGATAAAGAAGAACAGCGTGTTAGAGCCATAAATCAACATCGGCATCGCCAGCGCAAATAACCAGG > NC_000913/2872957‑2873237
||
tAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGCTCATCaat > 2:528959/1‑151 (MQ=255)
aaTCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGCTCATCaatg > 2:734532/1‑151 (MQ=255)
cATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGCTCATCaatgaatg < 2:12033/150‑1 (MQ=255)
cATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGCTCATCAATGAATGc < 2:722959/151‑1 (MQ=255)
tattaGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGCTCATCAATGAATGCAg < 2:82749/150‑1 (MQ=255)
aGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGCTCATCAATGAATGCAGCGCa < 1:276148/150‑1 (MQ=255)
tACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGCTCATCAATGAATGCAGCGCAATcc > 1:270094/1‑151 (MQ=255)
aCGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGCTCATCAATGAATGCAGCGCAATccc > 2:256783/1‑151 (MQ=255)
tggaTTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGCTCATCAATGAATGCAGCGCAATCCCcaccac > 2:516275/4‑151 (MQ=255)
aaTTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGCTCATCAATGAATGCAGCGCAATCCCCACCACt > 1:168539/1‑150 (MQ=255)
aTTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGCTCATCAATGAATGCAGCGCAATCCCCACCACTAc > 1:422336/1‑151 (MQ=255)
tATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGCTCATCAATGAATGCAGCGCAATCCCCACCACTACcg > 1:34265/1‑151 (MQ=255)
tATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGCTCATCAATGAATGCAGCGCAATCCCCACCACTACcg > 1:832347/1‑151 (MQ=255)
gAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGCTCATCAATGAATGCAGCGCAATCCCCACCACTACcgcg > 2:763614/1‑150 (MQ=255)
aaCAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGCTCATCAATGAATGCAGCGCAATCCCCACCACTACCGCGAc > 2:35119/1‑151 (MQ=255)
aCAGAGGAGACTGGAAAGTACCAATTAGCCCAGTAGCCACATAAACAGAGCGCCCAACATAATGCCTACTGTCACCAGGGAGAAAACAATACTGTAGCGTAGCTTTCCGCTCATCAATGAACGCAGCGCAATCCCCACCACTACCGCGACg > 2:609213/1‑151 (MQ=255)
agagGAGACGGGAAAGTACACATTAGCCCAGTCGCCACATAAAGAGCGCGCCAAACATAATGAATACTGTCACCAGGGTGAAAACCATACTGTAGCGTAGCTTTCCGCTCATCAATGAATGCAGCGCAATCCCCACCACTACCGCGACggg > 2:254695/1‑151 (MQ=255)
agaCGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGCTCATCAATGAATGCAGCGCAATCCCCACCACTACCGCGACGGGCATCa < 2:168515/151‑1 (MQ=255)
gggAAAGTACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGCTCATCAATGAATGCAGCGCAATCCCCACCACTACCGCGACGGGCATCAgcgc > 2:212436/1‑151 (MQ=255)
aaaGTACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGCTCATCAATGAATGCAGCGCAATCCCCACCACTACCGCGACGGGCATCAGCGCCag < 1:219076/151‑1 (MQ=255)
aaaGTACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGCTCATCAATGAATGCAGCGCAATCCCCACCACTACCGCGACGGGCATCAGCGCCag < 1:212462/151‑1 (MQ=255)
aaTTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGCTCATCAATGAATGCAGCGCAATCCCCACCACTACCGCGACGGGCATCAGCGCCagaaagaa > 2:475052/1‑149 (MQ=255)
tAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGCTCATCAATGAATGCAGCGCAATCCCCACCACTACCGCGACGGGCATCAGCGCCAGAAAGAAAGGc < 1:3566/150‑1 (MQ=255)
cAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGCTCATCAATGAATGCAGCGCAATCCCCACCACTACCGCGACGGGCATCAGCGCCAGAAAGAAAGGCCAGgtg < 2:517587/151‑1 (MQ=255)
aGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGCTCATCAATGAATGCAGCGCAATCCCCACCACTACCGCGACGGGCATCAGCGCCAGAAAGAAAGGCCAGgtgt < 1:807078/151‑1 (MQ=255)
aGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGCTCATCAATGAATGCAGCGCAATCCCCACCACTACCGCGACGGGCATCAGCGCCAGAAAGAAAGGCCAGgtg > 2:327509/1‑150 (MQ=255)
gCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGCTCATCAATGAATGCAGCGCAATCCCCACCACTACCGCGACGGGCATCAGCGCCAGAAAGAAAGGCCAGGTGTAGAt < 1:510495/151‑1 (MQ=255)
acgtAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGGAAACCATACTCTAGCGTAGCTTTCCGCTCATCAATGAATGCAGCGCAACCCCCACCACTACCGCGACGGGCATCAGCGCCGGAAAGAAAGGCAAGGTGTAGATaa < 2:653318/147‑1 (MQ=255)
acaTAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGCTCATCAATGAATGCAGCGCAATCCCCACCACTACCGCGACGGGCATCAGCGCCAGAAAGAAAGGCCAGGTGTAGATaa > 2:243158/1‑150 (MQ=255)
caTAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGCTCATCAATGAATGCAGCGCAATCCCCACCACTACCGCGACGGGCATCAGCGCCAGAAAGAAAGGCCAGGTGTAGATaa > 1:491533/1‑149 (MQ=255)
aaCAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGCTCATCAATGAATGCAGCGCAATCCCCACCACTACCGCGACGGGCATCAGCGCCAGAAAGAAAGGCCAGGTGTAGATAaaga > 2:189004/1‑148 (MQ=255)
gcgcCAACCATAATGCCTACCGTCACCAGGGTGAAATCAATACTGTAGCGTAGCTTTCCGCTCATCAATGTATGCAGCGCATTCCCCACCACTACCGCAACGGGCATCAGCGCCAGAAAGAAAGGCCAGGTGTAGATAAAGAAGTACAGCg < 2:648586/151‑1 (MQ=255)
cgcCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGCTCATCAATGAATGCAGCGCAATCCCCACCACTACCGCGACGGGCATCAGCGCCAGAAAGAAAGGCCAGGTGTAGATAAAGAAGAACAGCgt < 1:580920/151‑1 (MQ=255)
ccAAACATAATGCCTACTGTCACCAGGGTGAAAACAATCCTGTAGCGTAGCTTTCCGCTCATCAATGAATGCAGCGCAATCCCCACCACTACCGCGACGGGCAGCAGCGCCAGAAAGAAAGGCCAGGTGTAGATAAAGAAGAACAGCg < 2:547945/148‑1 (MQ=255)
aaaCATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGCTCATCAATGAATGCAGCGCAATCCCCACCACTACCGCGACGGGCATCAGCGCCAGAAAGAAAGGCCAGGTGTAGATAAAGAAGAACAGCGTGtt > 1:580432/1‑150 (MQ=255)
aCATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGCTCATCAATGAATGCAGCGCAATCCCCACCACTACCGCGACGGGCATCAGCGCCAGAAAGAAAGGCCAGGTGTAGATAAAGAAGAACAGCGTGTTaga < 1:146365/151‑1 (MQ=255)
cATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGCTCATCAATGAATGCAGCGCAATCCCCACCACTACCGCGACGGGCATCAGCGCCAGAAAGAAAGGCCAGGTGTAGATAAAGAAGAACAGCGTGTTagag < 1:174980/151‑1 (MQ=255)
aaTGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGCTCATCAATGAATGCAGCGCAATCCCCACCACTACCGCGACGGGCATCAGCGCCAGAAAGAAAGGCCAGGTGTAGATAAAGAAGAACAGCGTGTTAGAGcc > 2:885380/1‑150 (MQ=255)
aTGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGCTCATCAATGAATGCAGCGCAATCCCCACCACTACCGCGACGGGCATCAGCGCCAGAAAGAAAGGCCAGGTGTAGATAAAGAAGAACAGCGTGTT‑GAGCCa > 2:745202/1‑149 (MQ=255)
aCTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGCTCATCAATGAATGCAGCGCAATCCCCACCACTACCGCGACGGGCATCAGCGCCAGAAAGAAAGGCCAGGTGTAGATAAAGAAGAACAGCGTGTTAGAGCCATAAATc < 1:435057/150‑1 (MQ=255)
aCTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGCTCATCAATGAATGCAGCGCAATCCCCACCACTACCGCGACGGGCATCAGCGCCAGAAAGAAAGGCCAGGTGTAGATAAAGAAGAACAGCGTGTTAGAGCCATAAATc > 1:302341/1‑150 (MQ=255)
aCTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGCTCATCAATGAATGCAGCGCAATCCCCACCACTACCGCGACGGGCATCAGCGCCAGAAAGAAAGGCCAGGTGTAGATAAAGAAGAACAGCGTGTTAGAGCCATAAATCa < 2:416901/151‑1 (MQ=255)
cACCAGGGTGAAAACAATACTGTAGCTTAGCTTTCCGCTCATCAATGAATGCAGCGCAATCCCCACCACTACCGCGACGGGCATCAGCGCCAGAAAGAAAGGCCAGGTGTAGATAAAGAAGAACAGCGTGTTAGAGCCATAAATCAACATc < 2:778379/151‑1 (MQ=255)
gggTGAAAACAATACTGTAGCGTAGCTTTCCGCTCATCAATGAATGCAGCGCAATCCCCACCACTACCGCGACGGGCATCAGCGCCAGAAAGAAAGGCCAGGTGTAGATAAAGAAGAACAGCGTGTTAGAGCCATAAATCAACATCGGCAt > 2:572837/1‑151 (MQ=255)
ggTGAAAACAATACTGTAGCGTAGCTTTCCGCTCATCAATGAATGCAGCGCAATCCCCACCACTACCGCGACGGGCATCAGCGCCAGAAAGAAAGGCCAGGTGTAGATAAAGAAGAACAGCGTGTTAGAGCCATAAATCAACATCGGCATc > 1:311492/1‑151 (MQ=255)
gAAAACAATACTGTAGCGTAGCTTTCCGCTCATCAATGAATGCAGCGCAATCCCCACCACTACCGCGACGGGCATCAGCGCCAGAAAGAAAGGCCAGGTGTAGATAAAGAAGAACAGCGTGTTAGAGCCATAAATCAACATCGGCATCGcc > 2:525569/1‑151 (MQ=255)
aaCAATACTGTAGCGTAGCTTTCCGCTCATCAATGAATGCAGCGCAATCCCCACCACTACCGCGACGGGCATCAGCGCCAGAAAGAAAGGCCAGGTGTAGATAAAGAAGAACAGCGTGTTAGAGCCATAAATCAACATCGGCATCGCCAgc > 2:645006/1‑151 (MQ=255)
gtagcgtagcTTTCCGCTCATCAATGAATGCAGCGCAATCCCCACCACTACCGCGACGGGCATCAGCGCCAGAAAGAAAGGCCAGGTGTAGATAAAGAAGAACAGCGTGTTAGAGCCATAAATCAACATCGGCATCGCCAGCGCAAATaa < 2:233720/150‑1 (MQ=255)
gcgtagcTTTCCGCTCATCAATGAATGCAGCGCAATCCCCACCACTACCGCGACGGGCATCAGCGCCAGAAAGAAAGGCCAGGTGTAGATAAAGAAGAACAGCGTGTTAGACCCATAAATCAACATCGGCATCGCCATCGCAAATAAc < 2:291931/148‑1 (MQ=255)
tagcTTTCCGCTCATCAATGAATGCAGCGCAATCCCCACCACTACCGCGACGGGCATCAGCGCCAGAAAGCAAGGCAAGGTGTAGATAAAGAAGAACAGCGTGTTAGAGCAATAAATCAACATCGGCATCGCCAGCGCAAATAACCAgg > 2:466394/1‑149 (MQ=255)
gcTTTCCGCTCATCAATGAATGCAGCGCAATCCCCACCACTACCGCGACGGGCATCAGCGCCAGAAAGAAAGGCCAGGTGTAGATAAAGAAGAACAGCGTGTTAGAGCCATAAATCAACATCGGCATCGCCAGCGCAAAt < 1:335324/140‑1 (MQ=255)
gcTTTCCGCTCATCAATGAATGCAGCGCAATCCCCACCACTACCGCGACGGGCATCAGCGCCAGAAAGAAAGGCCAGGTGTAGATAAAGAAGAACAGCGTGTTAGAGCCATAAATCAACATCGGCATCGCCAGCGCAAAt > 2:335298/1‑140 (MQ=255)
cTTTCCGCTCATCAATGAATGCAGCGCAATCCCCACCACTACCGCGACGGGCATCAGCGCCAGAAAGAAAGGCCAGGTGTAGATAAAGAAGAACAGCGTGTTAGAGCCATAAATCAACATCGGCATCGCCAGCGCAAATAACCAgg > 1:868240/1‑146 (MQ=255)
||
TAATCTCATTATTAGTTACGGTTTGAATTATGAACAGAGGAGACGGGAAAGTACAAATTAGCCCAGTAGCCACATAAACAGTGCGCCAAACATAATGCCTACTGTCACCAGGGTGAAAACAATACTGTAGCGTAGCTTTCCGTCCATCAATGAATGCAGCGCAATCCCCACCACTACCGCGACGGGCATCAGCGCCAGAAAGAAAGGCCAGGTGTAGATAAAGAAGAACAGCGTGTTAGAGCCATAAATCAACATCGGCATCGCCAGCGCAAATAACCAGG > NC_000913/2872957‑2873237
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
