Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F50 I3 R1 283 58.3 1819865 98.8% 1798026 150.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,246,757 C→T R36C (CGC→TGC)  exuR → hexuronate regulon transcriptional repressor; autorepressor

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,246,7570CT100.0% 240.7 / NA 64R36C (CGC→TGC) exuRhexuronate regulon transcriptional repressor; autorepressor
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (33/31);  total (33/31)

GTATAACAAATATAGTCTGCCGTATCATGCCTGGAGCGCATATGGAAATCACTGAACCACGCCGTTTGTATCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAACGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAGGCGGCT  >  NC_000913/3246611‑3246900
                                                                                                                                                  |                                                                                                                                               
gTATAACAAATATAGTCTGCCGTATCATGCCTGGAGCGCATATGGAAATCACTGAACCACGCCGTTTGTATCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCtt                                                                                                                                             <  1:286347/151‑1 (MQ=255)
    aaCAAATATAGTCTGCCGTATCATGCCTGGAGCGCATATGGAAATCACTGAACCACGCCGTTTGTATCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTAt                                                                                                                                          <  1:706406/150‑1 (MQ=255)
    aaCAAATATAGTCTGCCGTATCATGCCTGGAGCGCATATGGAAATCACTGAACCACGCCGTTTGTATCAAAAACTTGCCGCTGACCTGAAAGAGAGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTAtt                                                                                                                                         >  2:561155/1‑151 (MQ=255)
     aCAAATATAGTCTGCCGTATCATGCCTGGAGCGCATATGGAAATCACTGAACCACGCCGTTTGTATCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTg                                                                                                                                        >  2:108207/1‑151 (MQ=255)
           ataGTCTGCCGTATCATGCCTGGAGCGCATATGGAAATCACTGAACCACGCCGTTTGTATCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATg                                                                                                                                  <  1:258726/151‑1 (MQ=255)
            taGTCTGCCGTATCATGCCTGGAGCGCATATGGAAATCACTGAACCACGCCGTTTGTATCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATg                                                                                                                                  >  1:738335/1‑150 (MQ=255)
                cTGCCGTATCATGCCTGGAGCGCATATGGAAATCACTGAACCACGCCGTTTGTATCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGaaa                                                                                                                               >  1:122124/1‑149 (MQ=255)
                     gTATCATGCCTGGAGCGCATATGGAAATCACTGAACCACGCCGTTTGTATCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGt                                                                                                                        >  1:743731/1‑151 (MQ=255)
                         cATGCCTGGAGCGCATATGGAAATCACTGAACCACGCCGTTTGTATCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAg                                                                                                                     <  2:347610/150‑1 (MQ=255)
                          aTGCCTGGAGCGCATATGGAAATCACTGAACCACGCCGTTTGTATCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGcc                                                                                                                   <  2:133212/151‑1 (MQ=255)
                          aTGCCTGGAGCGCATATGGAAATCACTGAACCACGCCGTTTGTATCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGcc                                                                                                                   >  1:831991/1‑151 (MQ=255)
                                ggAGCGCATATGGAAATCACTGAACCACGCCGTTTGTATCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACgg                                                                                                             >  2:191582/1‑151 (MQ=255)
                                      cATATGGAAATCACTGAACCACGCCGTTTGTATCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTc                                                                                                       <  1:467639/151‑1 (MQ=255)
                                       atatGGAAATCACTGAACCACGCCGTTTGTATCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCg                                                                                                      <  2:555750/151‑1 (MQ=255)
                                       atatGGAAATCACTGAACCACGCCGTTTGTATCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCg                                                                                                      >  1:381477/1‑151 (MQ=255)
                                         atGGAAATCACTGAACCACGCCGTTTGTATCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGt                                                                                                     <  2:710743/150‑1 (MQ=255)
                                          tGGAAATCACTGAACCACGCCGTTTGTATCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTg                                                                                                    >  2:364372/1‑150 (MQ=255)
                                           ggAAATCACTGAACCACGCCGTTTGTATCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGa                                                                                                   >  2:38112/1‑150 (MQ=255)
                                             aaaTCACTGAACCACGCCGTTTGTATCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGc                                                                                                <  1:152401/151‑1 (MQ=255)
                                               aTCACTGAACCACGCCGTTTGTATCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGcc                                                                                               >  2:105069/1‑150 (MQ=255)
                                                 cACTGAACCACGCCGTTTGTATCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCcatc                                                                                            >  2:182353/1‑151 (MQ=255)
                                                 cACTGAACCACGCCGTTTGTATCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCcatc                                                                                            >  2:407525/1‑151 (MQ=255)
                                                   ccgAACCACGCCGTTTGTATCAACAACTTGCCGCTGACCTGAAAGAGCGCATCTAACAGGGCGTCTATATGGTGGGTGATAAACTGCCTGCAGAATGCTTAATTGCCTATGAAAAGAACGTCTGCCGTACGGTAGTTCGTGCAGCcatcat                                                                                          <  2:224671/149‑1 (MQ=255)
                                                     gAACCACGCCGTTTGTATCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCcatcatc                                                                                         <  1:301745/150‑1 (MQ=255)
                                                     gAACCACGCCGTTTGTATCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCcatcatc                                                                                         <  1:69529/150‑1 (MQ=255)
                                                      aaCCACGCCGTTTGTATCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCcatcatcat                                                                                       >  2:304415/1‑151 (MQ=255)
                                                            gCCGTTTGTATCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTgg                                                                                  >  1:341627/1‑150 (MQ=255)
                                                             ccGTTTGTATCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGaa                                                                                <  1:633418/151‑1 (MQ=255)
                                                             ccGTTTGTATCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGaa                                                                                <  1:517216/151‑1 (MQ=255)
                                                                 ttGTATCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTg                                                                            >  2:802072/1‑151 (MQ=255)
                                                                  tGTATCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTg                                                                            <  1:331905/150‑1 (MQ=255)
                                                                        aacaacTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCt                                                                      >  1:387321/1‑150 (MQ=255)
                                                                         acaacTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTAt                                                                    <  1:551480/151‑1 (MQ=255)
                                                                           aacTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGt                                                                  >  1:805857/1‑151 (MQ=255)
                                                                             cTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCg                                                                >  1:20060/1‑151 (MQ=255)
                                                                                gCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGaa                                                              <  2:418175/150‑1 (MQ=255)
                                                                                gCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGaa                                                              <  1:831182/150‑1 (MQ=255)
                                                                                gCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAg                                                             <  2:168396/151‑1 (MQ=255)
                                                                                    cTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCg                                                         >  2:258574/1‑151 (MQ=255)
                                                                                      gACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGt                                                        >  1:36672/1‑150 (MQ=255)
                                                                                       aCCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTa                                                       >  1:455435/1‑150 (MQ=255)
                                                                                            aaaGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGtt                                                 <  1:572594/151‑1 (MQ=255)
                                                                                             aaGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTc                                                <  1:38134/151‑1 (MQ=255)
                                                                                              agagCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCa                                               <  2:881902/151‑1 (MQ=255)
                                                                                                agCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAgg                                             <  1:490276/151‑1 (MQ=255)
                                                                                                 gcgcATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGt                                            <  1:258312/151‑1 (MQ=255)
                                                                                                   gcATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTAt                                          >  1:19601/1‑151 (MQ=255)
                                                                                                     aTCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTc                                        <  2:416811/151‑1 (MQ=255)
                                                                                                     aTCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTc                                        <  1:329840/151‑1 (MQ=255)
                                                                                                         aaCAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCAtgt                                    >  2:334843/1‑151 (MQ=255)
                                                                                                         aaCAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCAtgt                                    >  1:224442/1‑151 (MQ=255)
                                                                                                           cAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTgg                                  >  2:400998/1‑151 (MQ=255)
                                                                                                                 gTCTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTcc                             >  1:7510/1‑150 (MQ=255)
                                                                                                                   cTATCTGGTGGGTGATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAAc                          >  2:192418/1‑151 (MQ=255)
                                                                                                                          gtgggtgATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCcg                    >  2:683060/1‑150 (MQ=255)
                                                                                                                              gtgATAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCa               <  1:304441/151‑1 (MQ=255)
                                                                                                                                 aTAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCATCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCACCCAGCCGCGCCAAca            <  2:309968/151‑1 (MQ=255)
                                                                                                                                  tAAACTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATc             >  1:287932/1‑149 (MQ=255)
                                                                                                                                   aaaCTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATcag           <  1:736256/150‑1 (MQ=255)
                                                                                                                                     aCTGCCTGCAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATcagcag        <  1:370033/151‑1 (MQ=255)
                                                                                                                                          ctgcAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAggcggc   >  2:644039/1‑151 (MQ=255)
                                                                                                                                          ctgcAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGAAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCTGCGCCATCAGCAggcgg    >  1:852960/1‑150 (MQ=255)
                                                                                                                                           tgcAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAGGCGGCt  >  1:378222/1‑151 (MQ=255)
                                                                                                                                            gcAGAATGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAGGCGGCt  <  2:568894/150‑1 (MQ=255)
                                                                                                                                                  |                                                                                                                                               
GTATAACAAATATAGTCTGCCGTATCATGCCTGGAGCGCATATGGAAATCACTGAACCACGCCGTTTGTATCAACAACTTGCCGCTGACCTGAAAGAGCGCATCGAACAGGGCGTCTATCTGGTGGGTGATAAACTGCCTGCAGAACGCTTTATTGCCGATGAAAAGAACGTCAGCCGTACGGTAGTTCGTGAAGCCATCATCATGCTGGAAGTTGAAGGCTATGTCGAAGTGCGTAAAGGTTCAGGTATTCATGTGGTTTCCAACCAGCCGCGCCATCAGCAGGCGGCT  >  NC_000913/3246611‑3246900

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A