Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F50 I2 R1
|
257 |
49.9 |
1554294 |
99.0% |
1538751 |
150.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,340,783 |
G→A |
G170D (GGC→GAC) |
yrbG → |
putative calcium/sodium:proton antiporter |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,340,783 | 0 | G | A | 100.0%
| 217.5
/ NA
| 56 | G170D (GGC→GAC) | yrbG | putative calcium/sodium:proton antiporter |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (22/34); total (22/34) |
CGGACAACTTAGTCGCAGCGATGGTATCTTTCTCCTCTTTCTGGCTGTGCTATGGCTGCTGTTCATTGTTAAACTTGCACGTCAGGCTGAACGTCAGGGGACTGACAGCCTGACCAGAGAGCAGCTTGCAGAGCTGCCGCGTGACGGCGGATTGCCCGTCGCGTTTTTATGGCTCGGCATTGCGCTTATCATCATGCCAGTGGCCACGCGGATGGTGGTTGATAACGCCACGGTGCTGGCGAATTACTTTGCCATCAGCGAGTTGACGATGGGTCTGACGGCAATTGCTATCGG > NC_000913/3340637‑3340930
|
cGGACAACTTAGTCGCAGCGATGGTATCTTTCTCCTCTTTCTGGCTGTGCTATGGCTGCTGTTCATTGTTAAACTTGCACGTCAGGCTGAACGTCAGGGGACTGACAGCCTGACCAGAGAGCAGCTTGCAGAGCTGCCGCGTGAcgacgg > 1:720629/1‑150 (MQ=255)
ggACAACTTAGTCGCAGCGATGGTATCTTTCTCCTCTTTCTGGCTGTGCTATGGCTGCTGTTCATTGTTAAACTTGCACGTCAGGCTGAACGTCAGGGGACTGACAGCCTGACCAGAGAGCAGCTTGCAGAGCTGCCGCGTGACGACGGAt > 2:711619/1‑151 (MQ=255)
aCAACTTAGTCGCAGCGATGGTATCTTTCTCCTCTTTCTGGCTGTGCTATGGCTGCTGTTCATTGTTAAACTTGCACGTCAGGCTGAACGTCAGGGGACTGACAGCCTGACCAGAGAGCAGCTTGCAGAGCTGCCGCGTGACGACGGATTg < 1:140363/151‑1 (MQ=255)
aGTCGCAGCGATGGTATCTTTCTCCTCTTTCTGGCTGTGCTATGGCTGCTGTTCATTGTTAAACTTGCACGTCAGGCTGAACGTCAGGGGACTGACAGCCTGACCAGAGAGCAGCTTGCAGAGCTGCCGCGTGACGACGGATTGCCCGTcg > 1:68149/1‑151 (MQ=255)
gTCGCAGCGATGGTATCTTTCTCCTCTTTCTGGCTGTGCTATGGCTGCTGTTCATTGTTAAACTTGCACGTCAGGCTGAACGTCAGGGGACTGACAGCCTGACCAGAGAGCAGCTTGCAGAGCTGCCGCGTGACGACGGATTGCCCGTcgc > 2:174265/1‑151 (MQ=255)
aGCGATGGTATCTTTCTCCTCTTTCTGGCTGTGCTATGGCTGCTGTTCATTGTTAAACTTGCACGTCAGGCTGAACGTCAGGGGACTGACAGCCTGACCAGAGAGCAGCTTGCAGAGCTGCCGCGTGACGACGGATTGCCCGTCGCGtttt < 1:457303/151‑1 (MQ=255)
gCGATGGTATCTTTCTCCTCTTTCTGGCTGTGCTATGGCTGCTGTTCATTGTTAAACTTGCACGTCAGGCTGAACGTCAGGGGACTGACAGCCTGACCAGAGAGCAGCTTGCAGAGCTGCCGCGTGACGACGGATTGCCCGTCGCGttttt < 1:462629/151‑1 (MQ=255)
aTGGTATCTTTCTCCTCTTTCTGGCTGTGCTATGGCTGCTGTTCATTGTTAAACTTGCACGTCAGGCTGAACGTCAGGGGACTGACAGCCTGACCAGAGAGCAGCTTGCAGAGCTGCCGCGTGACGACGGATTGCCCGTCGCGTTTTTa > 2:438449/1‑149 (MQ=255)
aTGGTATCTTTCTCCTCTTTCTGGCTGTGCTATGGCTGCTGTTCATTGTTAAACTTGCACGTCAGGCTGAACGTCAGGGGACTGACAGCCTGACCAGAGAGCAGCTTGCAGAGCTGCCGCGTGACGACGGATTGCCCGTCGCGTTTTTa < 1:438398/149‑1 (MQ=255)
aTGGTATCTTTCTCCTCTTTCTGGCTGTGCTATGGCTGCTGTTCATTGTTAAACTTGCACGTCAGGCTGAACGTCAGGGGACTGACAGCCTGACCAGAGAGCAGCTTGCAGAGCTGCCGCGTGACGACGGATTGCCCGTCGCGTTTTTATg < 1:539059/151‑1 (MQ=255)
ggTATCTTTCTCCTCTTTCTGGCTGTGCTATGGCTGCTGTTCATTGTTAAACTTGCACGTCAGGCTGAACGTCAGGGGACTGACAGCCTGACCAGAGAGCAGCTTGCAGAGCTGCCGCGTGACGACGGATTGCCCGTCGCGTTTTTATGGc < 1:82831/151‑1 (MQ=255)
ggTATCTTTCTCCTCTTTCTGGCTGTGCTATGGCTGCTGTTCATTGTTAAACTTGCACGTCAGGCTGAACGTCAGGGGACTGACAGCCTGACCAGAGAGCAGCTTGCAGAGCTGCCGCGTGACGACGGATTGCCCGTCGCGTTTTTATGGc > 2:425506/1‑151 (MQ=255)
ggTATCTTTCTCCTCTTTCTGGCTGTGCTATGGCTGCTGTTCATTGTTAAACTTGCACGTCAGGCTGAACGTCAGGGGACTGACAGCCTGACCAGAGAGCAGCTTGCAGAGCTGCCGCGTGACGACGGATTGCCCATCGCGTTTTTATGGc < 2:57845/151‑1 (MQ=255)
gTATCTTTCTCCTCTTTCTGGCTGTGCTATGGCTGCTGTTCATTGTTAAACTTGCACGTCAGGCTGAACGTCAGGGGACTGACAGCCTGACCAGAGAGCAGCTTGCAGAGCTGCCGCGTGACGACGGATTGCCCGTCGCGTTTTTATGGCt < 1:756758/151‑1 (MQ=255)
tATCTTTCTCCTCTTTCTGGCTGTGCTATGGCTGCTGTTCATTGTTAAACTTGCACGTCAGGCTGAACGTCAGGGGACTGACAGCCTGACCAGAGAGCAGCTTGCAGAGCTGCCGCGTGACGACGGATTGCCCGTCGCGTTTTTATGGCTc > 2:103193/1‑151 (MQ=255)
ctctTTCTGGCTGTGCTATGGCTGCTGTTCATTGTTAAACTTGCACGTCAGGCTGAACGTCAGGGGACTGACAGCCTGACCAGAGAGCAGCTTGCAGAGCTGCCGCGTGACGACGGATTGCCCGTCGCGTTTTTATGGCTCGGCAtt > 1:657999/1‑147 (MQ=255)
ttCTGGCTGTGCTATGGCTGCTGTTCATTGTTAAACTTGCACGTCAGGCTGAACGTCAGGGGACTGACAGCCTGACCAGAGAGCAGCTTGCAGGGCTGCCGCGTGACGACGGATTGCCCGTCGCGTTTTTATGGCTCGGCATTGCGCTTat > 1:370190/1‑151 (MQ=255)
ttCTGGCTGTGCTATGGCTGCTGTTCATTGTTAAACTTGCACGTCAGGCTGAACGTCAGGGGACTGACAGCCTGACCAGAGAGCAGCTTGCAGAGCTGCCGCGTGACGACGGATTGCCCGTCGCGTTTTTATGGCTCGGCATTGCGCtt < 2:476414/149‑1 (MQ=255)
ttCTGGCTGTGCTATGGCTGCTGTTCATTGTTAAACTTGCACGTCAGGCTGAACGTCAGGGGACTGACAGCCTGACCAGAGAGCAGCTTGCAGAGCTGCCGCGTGACGACGGATTGCCCGTCGCGTTTTTATGGCTCGGCATTGCGCt < 1:216199/148‑1 (MQ=255)
ttCTGGCTGTGCTATGGCTGCTGTTCATTGTTAAACTTGCACGTCAGGCTGAACGTCAGGGGACTGACAGCCTGACCAGAGAGCAGCTTGCAGAGCTGCCGCGTGACGACGGATTGCCCGTCGCGTTTTTATGGCTCGGCATTGCGCTTa < 2:287563/150‑1 (MQ=255)
cTGGCTGTGCTATGGCTGCTGTTCATTGTTAAACTTGCACGTCAGGCTGAACGTCAGGGGACTGACAGCCTGACCAGAGAGCAGCTTGCAGAGCTGCCGCGTGACGACGGATTGCCCGTCGCGTTTTTATGGCTCGGCATTGCGCTTatc > 1:484909/1‑150 (MQ=255)
tgtgCTATGGCTGCTGTTCATTGTTAAACTTGCACGTCAGGCTGAACGTCAGGGGACTGACAGCCTGACCAGAGAGCAGCTTGCAGAGCTGCCGCGTGACGACGGATTGCCCGTCGCGTTTTTATGGCTCGGGATTGGGCTTTTcatcat > 1:412544/1‑150 (MQ=255)
gtgCTATGGCTGCTGTTCATTGTTAAACTTGCACGTCAGGCTGAACGTCAGGGGACTGACAGCCTGACCAGAGAGCAGCTTGCAGAGCTGCCGCGTGACGACGGATTGCCCGTCGCGTTTTTATGGCTCGGCATTGCGCTTATCATCATg < 2:26739/150‑1 (MQ=255)
gtgCTATGGCTGCTGTTCATTGTTAAACTTGCACGTCAGGCTGAACGTCAGGGGACTGACAGCCTGACCAGAGAGCAGCTTGCAGAGCTGCCGCGTGACGACGGATTGCCCGTCGCGTTTTTATGGCTCGGCATTGCGCTTATCATCATGc < 1:148687/151‑1 (MQ=255)
tgctgTTCATTGTTAAACTTGCACGTCAGGCTGAACGTCAGGGGACTGACAGCCTGACCAGAGAGCAGCTTGCAGAGCTGCCGCGTGACGACGGATTGCCCGTCGCGTTTTTATGGCTCGGCATTGCGCTTATCATCATGCCAGTGGCCAc > 2:138919/1‑151 (MQ=255)
gTTCATTGTTAAACTTGCACGTCAGGCTGAACGTCAGGGGACTGACAGCCTGACCAGAGAGCAGCTTGCAGAGCTGCCGCGTGACGACGGATTGCCCGTCGCGTTTTTATGGCTCGGCATTGCGCTTATCATCATGCCAGTGGCCACGCgg < 1:423512/151‑1 (MQ=255)
gTTCATTGTTAAACTTGCACGTCAGGCTGAACGTCAGGGGACTGACAGCCTGACCAGAGAGCAGCTTGCAGAGCTGCCGCGTGACGACGGATTGCCCGTCGCGTTTTTATGGCTCGGCATTGCGCTTATCATCATGCCAGTGGCCACGCgg > 2:203013/1‑151 (MQ=255)
ttCATTGTTAAACTTGCACGTCAGGCTGAACGTCAGGGGACTGACAGCCTGACCAGAGAGCAGCTTGCAGAGCTGCCGCGTGACGACGGATTGCCCGTCGCGTTTTTATGGCTCGGCATTGCGCTTATCATCATGCCAGTGGCCACGCgg < 1:772162/150‑1 (MQ=255)
ttCATTGTTAAACTTGCACGTCAGGCTGAACGTCAGGGGACTGACAGCCTGACCAGAGAGCAGCTTGCAGAGCTGCCGCGTGACGACGGATTGCCCGTCGCGTTTTTATGGCTCGGCATTGCGCTTATCATCATGCCAGTGGCCACGCgg < 1:193795/150‑1 (MQ=255)
cATTGTTAAACTTGCACGTCAGGCTGAACGTCAGGGGACTGACAGCCTGACCAGAGAGCAGCTTGCAGAGCTGCCGCGTGACGACGGATTGCCCGTCGCGTTTTTATGGCTCGGCATTGCGCTTATCATCATGCCAGTGGCCACGCGGAt < 2:730549/150‑1 (MQ=255)
aTTGTTAAACTTGCACGTCAGGCTGAACGTCAGGGGACTGACAGCCTGACCAGAGAGCAGCTTGCAGAGCTGCCGCGTGACGACGGATTGCCCGTCGCGTTTTTATGGCTCGGCATTGCGCTTATCATCATGCCAGTGGCCACGCGGAtgg > 1:531440/1‑151 (MQ=255)
ttAAACTTGCACGTCAGGCTGAACGTCAGGGGACTGACAGCCTGACCAGAGAGCAGCTTGCAGAGCTGCCGCGTGACGACGGATTGCCCGTCGCGTTTTTATGGCTCGGCATTGCGCTTATCATCATGCCAGTGGCCACGCGGAtggtgg > 2:380706/1‑150 (MQ=255)
aCTTGCACGTCAGGCTGAACGTCAGGGGACTGACAGCCTGACCAGAGAGCAGCTTGCAGAGCTGCCGCGTGACGACGGATTGCCCGTCGCGTTTTTATGGCTCGGCATTGCGCTTATCATCATGCCAGTGGCCACGCGGATGGTGGTTg > 1:179982/1‑149 (MQ=255)
aCTTGCACGTCAGGCTGAACGTCAGGGGACTGACAGCCTGACCAGAGAGCAGCTTGCAGAGCTGCCGCGTGACGACGGATTGCCCGTCGCGTTTTTATGGCTCGGCATTGCGCTTATCATCATGCCAGTGGCCACGCGGATGGTGGTTGAt > 2:678816/1‑151 (MQ=255)
tGCACGTCAGGCTGAACGTCAGGGGACTGACAGCCTGACCAGAGAGCAGCTTGCAGAGCTGCCGCGTGACGACGGATTGCCCGTCGCGTTTTTATGGCTCGGCATTGCGCTTATCATCATGCCAGTGGCCACGCGGATGGTGGTTGATa < 1:696078/149‑1 (MQ=255)
gCACGTCAGGCTGAACGTCAGGGGACTGACAGCCTGACCAGAGAGCAGCTTGCAGAGCTGCCGCGTGACGACGGATTGCCCGTCGCGTTTTTATGGCTCGGCATTGCGCTTATCATCATGCCAGTGGCCACGCGGATGGTGGTTGATAAc < 1:711545/150‑1 (MQ=255)
cACGTCAGGCTGAACGTCAGGGGACTGACAGCCTGCCCAGAGAGCAGCTTGCAGAGCTGCCGCGTGACGACGGATTGCCCGTCGCGTTTTTATGGCTCGGCATTGCGCTTATCATCATGCCa < 2:208410/122‑1 (MQ=255)
cACGTCAGGCTGAACGTCAGGGGACTGACAGCCTGACCAGAGAGCAGCTTGCAGAGCTGCCGCGTGACGACGGATTGCCCGTCGCGTTTTTATGGCTCGGCATTGCGCTTATCATCCTGcc > 1:208378/1‑121 (MQ=255)
cAGGCTGAACGTCAGGGGACTGACAGCCTGACCAGAGAGCAGCTTGCAGAGCTGCCGCGTGACGACGGATTGCCCGTCGCGTTTTTATGGCTCGGCATTGCGCTTATCATCATGCCAGTGGCCACGCGGATGGTGGTTGATAACGCCACg < 2:7842/150‑1 (MQ=255)
cAGGCTGAACGTCAGGGGACTGACAGCCTGACCAGAGAGCAGCTTGCAGAGCTGCCGCGTGACGACGGATTGCCCGTCGCGTTTTTATGGCTCGGCATTGCGCTTATCATCATGCCAGTGGCCACGCGGATGGTGGTTGATAACGCCACg < 1:707960/150‑1 (MQ=255)
aGGCTGAACGTCAGGGGACTGACAGCCTGACCAGAGAGCAGCTTGCAGAGCTGCCGCGTGACGACGGATTGCCCGTCGCGTTTTTATGGCTCGGCATTGCGCTTATCATCATGCCAGTGGCCACGCGGATGGTGGTTGATAACGCCACgg > 1:528139/1‑150 (MQ=255)
gAACGTCAGGGGACTGACAGCCTGACCAGAGAGCAGCTTGCAGAGCTGCCGCGTGACGACGGATTGCCCGTCGCGTTTTTATGGCTCGGCATTGCGCTTATCATCATGCCAGTGGCCACGCGGATGGTGGTTGATAACGCCACGGTGCTg > 2:592303/1‑150 (MQ=255)
aaCGTCAGGGGACTGACAGCCTGACCAGAGAGCAGCTTGCAGAGCTGCCGCGTGACGACGGATTGCCCGTCGCGTTTTTATGGCTCGGCATTGCGCTTATCATCATGCCAGTGGCCACGCGGATGGTGGTTGATAACGCCACGGTGCTGGc < 2:180015/151‑1 (MQ=255)
aCGTCAGGGGACTGACAGCCTGACCAGAGAGCAGCTTGCAGAGCTGCCGCGTGACGACGGATTGCCCGTCGCGTTTTTATGGCTCGGCATTGCGCTTATCATCATGCCAGTGGCCACGCGGATGGGGGTTGATAACGCCACGGTGCTGGc > 2:459502/1‑150 (MQ=255)
cGTCAGGGGACTGACAGCCTGACCAGAGAGCAGCTTGCAGAGCTGCCGCGTGACGACGGATTGCCCGTCGCGTTTTTATGGCTCGGCATTGCGCTTATCATCATGCCAGTGGCCACGCGGATGGTGGTTGATAACGCCACGGTGCTGGCGa < 2:622763/151‑1 (MQ=255)
gTCAGGGGACTGACAGCCTGACCAGAGAGCAGCTTGCAGAGCTGCCGCGTGACGACGGATTGCCCGTCGCGTTTTTATGGCTCGGCATTGCGCTTATCATCATGCCAGTGGCCACGCGGATGGTGGTTGATAACGCCACGGTGCTGGCGa > 2:451964/1‑150 (MQ=255)
ggACTGACAGCCTGACCAGAGAGCAGCTTGCAGAGCTGCCGCGTGACGACGGATTGCCCGTCGCGTTTTTATGGCTCGGCATTGCGCTTATCATCATGCCAGTGGCCACGCGGATGGTGGTTGATAACGCCACGGTGCTGGCGAATTACtt < 1:358289/151‑1 (MQ=255)
gACAGCCTGACCAGAGAGCAGCTTGCAGAGCTGCCGCGTGACGACGGATTGCCCGTCGCGTTTTTATGGCTCGGCATTGCGCTTATCATCATGCCAGTGGCCACGCGGATGGTGGTTGATAACGCCACGGTGCTGGCGAATTACTTTGcc > 2:716874/1‑150 (MQ=255)
aCAGCCTGACCAGAGAGCAGCTTGCAGAGCTGCCGCGTGACGACGGATTGCCCGTCGCGTTTTTATGGCTCGGCATTGCGCTTATCATCATGCCAGTGGCCACGCGGATGGTGGTTGATAACGCCACGGTGCTGGCGAATTACTTTGCCAt < 1:118785/151‑1 (MQ=255)
gCCTGACCAGAGAGCAGCTTGCAGAGCTGCCGCGTGACGACGGATTGCCCGTCGCGTTTTTATGGCTCGGCATTGCGCTTATCATCATGCCAGTGGCCACGCGGATGGTGGTTGATAACGCCACGGTGCTGGCGAATTACTTTGCCATCAg < 2:44897/151‑1 (MQ=255)
gACCAGAGAGCAGCTTGCAGAGCTGCCGCGTGACGACGGATTGCCCGTCGCGTTTTTATGGCTCGGCATTGCGCTTATCATCATGCCAGTGGCCACGCGGATGGTGGTTGATAACGCCACGGTGCTGGCGAATTACTTTGCCATCAGCGAg < 1:76885/151‑1 (MQ=255)
tGCAGAGCTGCCGCGTGACGACGGATTGCCCGTCGCGTTTTTATGGCTCGGCATTGCGCTTATCATCATGCCAGTGGCCACGCGGATGGTGGTTGATAACGCCACGGTGCTGGCGAATTACTTTGCCATCAGCGAGTTGACGATGGGTCt < 1:755021/150‑1 (MQ=255)
gCAGAGCTGCCGCGTGACGACGGATTGCCCGCCGCGTTTTTATGGCTCGGCATTGCGCTTATCATCATGCCAGTGGCCACGCGGATGGTGGTTGATAACGCCACGGTGCTGGCGAATTACTTTGCCATCAGCGAGTTGACGATGGGTCTg < 2:365619/150‑1 (MQ=255)
cAGAGCTGCCGCGTGACGACGGATTGCCCGTCGCGTTTTTATGGCTCGGCATTGCGCTTATCATCATGCCAGTGGCCACGCGGATGGTGGTTGATAACGCCACGGTGCTGGCGAATTACTTTGCCATCAGCGAGTTGACGATGGGTCTGAc < 2:668482/151‑1 (MQ=255)
gCCGCGTGACGACGGATTGCCCGTCGCGTTTTTATGGCTCGGCATTGCGCTTATCATCATGCCAGTGGCCACGCGGATGGTGGTTGATAACGCCACGGTGCTGGCGAATTACTTTGCCATCAGCGAGTTGACGATGGGTCTGACGGCAAt < 2:595024/150‑1 (MQ=255)
gCCGCGTGACGACGGATTGCCCGTCGCGTTTTTATGGCTCGGCATTGCGCTTATCATCATGCCAGTGGCCACGCGGATGGTGGTTGATAACGCCACGGTGCTGGCGAATTACTTTGCCATCAGCGAGTTGACGATGGGTCTGACGGCAAt < 1:526/150‑1 (MQ=255)
ccGCGTGACGACGGATTGCCCGTCGCGTTTTTATGGCTCGGCATTGCGCTTATCATCATGCCAGTGGCCACGCGGATGGTGGTTGATAACGCCACGGTGCTGGCGAATTACTTTGCCATCAGCGAGTTGACGATGGGTCTGACGGCAATTg < 1:754894/151‑1 (MQ=255)
acgacgGATTGCCCGTCGCGTTTTTATGGCTCGGCATTGCGCTTATCATCATGCCAGTGGCCACGCGGATGGTGGTTGATAACGCCACGGTGCTGGCGAATTACTTTGCCATCAGCGAGTTGACGATGGGTCTGACGGCAATTGCTATCgg < 2:513782/151‑1 (MQ=255)
|
CGGACAACTTAGTCGCAGCGATGGTATCTTTCTCCTCTTTCTGGCTGTGCTATGGCTGCTGTTCATTGTTAAACTTGCACGTCAGGCTGAACGTCAGGGGACTGACAGCCTGACCAGAGAGCAGCTTGCAGAGCTGCCGCGTGACGGCGGATTGCCCGTCGCGTTTTTATGGCTCGGCATTGCGCTTATCATCATGCCAGTGGCCACGCGGATGGTGGTTGATAACGCCACGGTGCTGGCGAATTACTTTGCCATCAGCGAGTTGACGATGGGTCTGACGGCAATTGCTATCGG > NC_000913/3340637‑3340930
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A