Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F50 I1 R1 300 54.7 1718999 98.4% 1691495 149.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,817,861 A→G intergenic (‑1/+198) argQ ← / ← argZ tRNA‑Arg/tRNA‑Arg

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,817,8610AG87.9% 138.9 / 6.7 58intergenic (‑1/+198)argQ/argZtRNA‑Arg/tRNA‑Arg
Reads supporting (aligned to +/- strand):  ref base A (5/2);  new base G (19/32);  total (24/34)
Fisher's exact test for biased strand distribution p-value = 1.14e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01

ATCCTTCCTGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAAACTTATTCTACTGCTGA‑‑TATTGATACCGCTACTAAAGCCATATCAATTAAGAGATGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTC‑GCCCTTCGGGCCGTTGCTAAAGCAACGTTATCATCCCTAGTGCCTGCGG  >  NC_000913/2817713‑2818007
                                                                                                                                                    |                                                                                                                                                     
aTCCTTCCTGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGAAGGTTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATc                                                                                                                                                     <  1:152900/151‑1 (MQ=255)
   cttcctGGTGCCTGCGGTTAATACCGCCATCTCTTCGATACCTTCATTGCTGAAGGTTAGGGGGAATATGGATCATCCGGGCGGCTTGGAACCTCCGAGCGCTCGGTTCGGAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCGTCggg                                                                                                                                                  >  1:331324/1‑151 (MQ=14)
     tcctGGTGCCTGCGGTTAATACCGCCATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCGTCggg                                                                                                                                                  <  1:156521/149‑1 (MQ=255)
     tcctGGTGCCTGCGGTTAATACCGCCATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCGTCGGGa                                                                                                                                                 <  1:75238/150‑1 (MQ=255)
        tGGTGCCTGCGGTTAATACCGCCATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCg                                                                                                                                                    >  1:474590/1‑144 (MQ=255)
          gTGCCTGCGGTTAATACCGCCATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCGTCGGGAAAACtt                                                                                                                                           <  1:773637/151‑1 (MQ=255)
            gCCTGCGGTTAATACCGCCATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCGTCGGGAAAACTTAt                                                                                                                                         <  2:585723/151‑1 (MQ=255)
            gCCTGCGGTTAATACCGCCATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCGTCGGGAAAACTTAt                                                                                                                                         <  1:57936/151‑1 (MQ=255)
                 cGGTTAATACCGCCATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCGTCGGGAAAACTTATTCTAc                                                                                                                                    <  2:64756/151‑1 (MQ=255)
                     tAATACCGCCATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCGTCGGGAAAACTTATTCTActgc                                                                                                                                 <  2:728495/150‑1 (MQ=255)
                        tACCGCCATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAACTTACTTTActgccggtt                                                                                                                            >  1:177996/1‑146 (MQ=11)
                         aCCGCCATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCGTCGGGAAAACTTATTCTACTGCTGa‑‑ta                                                                                                                          <  2:635615/151‑1 (MQ=255)
                         aCCGCCATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCGTCGGGAAAACTTATTCTACTGCTGa‑‑t                                                                                                                           <  2:554216/150‑1 (MQ=255)
                          ccGCCATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATAGGGagatgtagttgtgt                                                                                                                                    >  1:740301/1‑129 (MQ=11)
                               aTCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCGTCGGGAAAATTTATTCTActgcggttttt                                                                                                                          >  2:65601/1‑140 (MQ=255)
                                 ctctTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCGTCGGGAAAA‑TTATTTTACTGCCGA‑‑tttttggatcc                                                                                                                 >  1:321375/1‑144 (MQ=11)
                                   ctTCGATACCTTCATTGCTGAAGGTTACGGTGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCGTCGGGAAAACTTATTCTACTGCTGA‑‑TATTGATACCGc                                                                                                                >  2:399484/1‑151 (MQ=255)
                                   ctTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCGTCGGGAAAACTTATTCTACTGCTGA‑‑TATTGATa                                                                                                                    <  1:788657/147‑1 (MQ=255)
                                    ttCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCGTCGGGAAAACTTATTCTACTGCTGA‑‑TATTGATACCGc                                                                                                                >  2:617907/1‑150 (MQ=255)
                                        aTACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGG‑AAACTTACTTTACTGCAGATTTTTTGATACCGctact                                                                                                            <  1:616883/151‑1 (MQ=11)
                                              tCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCGTCGGGAAAACTTATTCTACTGCTGA‑‑TATTGATACCGCTACTAAAGc                                                                                                       <  2:807840/149‑1 (MQ=255)
                                                  tGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCGTCGGGAAAACTTATTCTACTGCTGA‑‑TATTGATACCGCTACTAAAGCCat                                                                                                    >  2:479289/1‑148 (MQ=255)
                                                   gCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCGTCGGGAAAACTTATTCTACTGCTGA‑‑TATTGATACCGCTACTAAAGCCATATCa                                                                                                <  1:449910/151‑1 (MQ=255)
                                                   gCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCGTCGGGAAAACTTATTCTACTGCTGA‑‑TATTGATACCGCTACTAAAGCCATATCa                                                                                                <  1:807606/151‑1 (MQ=255)
                                                            tACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCGTCGGGAAAACTTATTCTACTGCTGA‑‑TATTGATACCGCTACTAAAGCCATATCAATTAagag                                                                                        <  1:231267/150‑1 (MQ=255)
                                                            tACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCGTCGGGAAAACTTATTCTACTGCTGA‑‑TATTGATACCGCTACTAAAGCCATATCAATTAag                                                                                          >  1:392865/1‑148 (MQ=255)
                                                                    atatGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCGTCGGGAAAACTTATTCTACTGCTGA‑‑TATTGATACCGCTACTAAAGCCATATCAATTAAGAGATGGTGCAt                                                                               <  2:392897/151‑1 (MQ=255)
                                                                    ataggtggCATCCGGGAGAATTCGAACCTCCGGCCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCGTCTGGAAACCTTATTCTACTGTTGA‑‑TATTGATACCGCTACTAAAGCCATATCAATTAAGAGATGGTGCAt                                                                               <  1:562496/144‑1 (MQ=14)
                                                                     tatGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCCGGCAAGGCGACCTGCGGGGGCAGAGGGAAAAGTTCTTCTATTGCTGA‑‑TATTGATTCCCCCACTAAAGCCATTACAAATAAGGAATgggggctc                                                                              >  1:111337/1‑145 (MQ=2)
                                                                        ggTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCGTCGGGAAAACTTATTCTACTGCTGA‑‑TATTGATACCGCTACTAAAGCCATATCAATTAAGAGATGGTGCATCCgg                                                                           <  2:851578/151‑1 (MQ=255)
                                                                         gTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCGTCGGGAAAACTTATTCTACTGCTGA‑‑TATTGATACCGCTACTAAAGCCATATCAATTAAGAGATGGTGCATCCggg                                                                          <  2:472027/151‑1 (MQ=255)
                                                                             aTCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCGTCGGGAAAACTTATTCTACTGCTGA‑‑TATTGATACCGCTACTAAAGCCATATCAATTAAGAGATGGTGCATCCGggagg                                                                       >  1:494253/1‑150 (MQ=255)
                                                                               ccGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCGTCGGGAAAACTTATTCTACTGCTGA‑‑TATTGATACCGCTACTAAAGCCATATCAATTAAGAGATGGTGCATCCGGGAGGAtt                                                                    <  1:396471/151‑1 (MQ=255)
                                                                               ccGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCGTCGGGAAAACTTATTCTACTGCTGA‑‑TATTGATACCGCTACTAAAGCCATATCAATTAAGAGATGGTGCATCCGGGAGGAt                                                                     <  2:639083/150‑1 (MQ=255)
                                                                                cGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCGTCGGGAAAACTTATTCTACTGCTGA‑‑TATTGATACCGCTACTAAAGCCATATCAATTAAGAGATGGTGCATCCGGGAGGAtt                                                                    >  2:181856/1‑150 (MQ=255)
                                                                                  ggaggaTTCGAACCACCGACCGCTCGGTTCGTAGCCGAGTACTCTAGCCAGCTGAGCTACGGATGCGTCGGGAAAACTTATTCTACTGCTGA‑‑TATTGATACCGCTACTAAAGCCATATCAATTAAGAGATGGTGCATCCGGGAGGATTACt                                                                 <  2:48717/151‑1 (MQ=255)
                                                                                    aggaTTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGCTGCGCCGGGCAGACCTTTTCTACTGCTGA‑‑TCTCGCAACCCCCACTCAAACGAAATCAATCAATAGAAGGTGCATCCGGTAAGAtacctc                                                                >  1:332003/1‑145 (MQ=9)
                                                                                    aggaTTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCGTCGGGAAAACTTATTCTACTGCTGA‑‑TATTGATACCGCTACTAAAGCCATATCAATTAAGAGATGGTGCATCCGGGAGGATTACTCg                                                               <  1:248851/151‑1 (MQ=255)
                                                                                     ggaTTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCGTCGGGAAAACTTATTCTACTGCTGA‑‑TATTGATACCGCTACTAAAGCCATATCAATTAAGAGATGGTGCATCCGGGAGGATTACTCGc                                                              <  1:283469/151‑1 (MQ=255)
                                                                                      gaTTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCGTCGGGAAAACTTATTCTACTGCTGA‑‑TATTGATACCGCTACTAAAGCCATATCAATTAAGAGATGGTGCATCCGGGAGGATTACTCGcc                                                             <  2:850123/151‑1 (MQ=255)
                                                                                       aTTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCGTCGGGAAAACTTATTCTACTGCTGA‑‑TATTGATACCGCTACTAAAGCCATATCAATTAAGAGATGGTGCATCCGGGAGGATTACTCGCCt                                                            >  2:47711/1‑151 (MQ=255)
                                                                                                     ccGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCGTCGGGAAAACTTATTCTACTGCTGA‑‑TATTGATACCGCTACTAAAGCCATATCAATTAAGAGATGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTC‑GCCCt                                              <  1:47689/150‑1 (MQ=255)
                                                                                                           ggTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCGTCGGGAAAACTTATTCTACTGCTGA‑‑TATTGATACCGCTACTAAAGCCATATCAATTAAGAGATGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTC‑GCCCTTCGGGcc                                       <  2:241432/151‑1 (MQ=255)
                                                                                                           ggTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCGTCGGGAAAACTTATTCTACTGCTGA‑‑TATTGATACCGCTACTAAAGCCATATCAATTAAGAGATGGGGCATCCGGGGGGATTACTCGCCTTTCgtccggaaaggcggg                                          >  1:227630/1‑135 (MQ=17)
                                                                                                               cgtaaaggAGTACTCTTTTCAGAAGAGTTGCGGATCCGGCGGCAAAAATTATTATCCTACTAA‑‑TATTGATACCGCTACAAAAGCCATTTCAATTAAGAGATGGTGCATCAGGGAGGATTACTCGCCTGGCGGCTC‑GCCCTTCGGTCCGTTg                                   <  1:684141/144‑1 (MQ=255)
                                                                                                                    ccGAGTACTCTATCCAGCTGAGCTACGGATGCGTCGGGAAAACTTATTCTACTGCTGA‑‑TATTGATACCGCTACTAAAGCCATATCAATTAAGAGATGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTC‑GCCCTTCGGGCCGTTGCTaa                               <  2:465791/150‑1 (MQ=255)
                                                                                                                     cGAGTACTCTATCCAGCTGAGCTACGGATGCGTCGGGAAAACTTATTCTACTGCTGA‑‑TATTGATACCGCTACTAAAGCCATATCAATTAAGAGATGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTC‑GCCCTTCGGGCCGTTGCTAAAg                             <  2:477258/151‑1 (MQ=255)
                                                                                                                          aCTCTATCCAGCTGAGCTACGGATGCGTCGGGAAAACTTATTCTACTGCTGA‑‑TATTGATACCGCTACTAAAGCCATATCAATTAAGAGATGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTC‑GCCCTTCGGGCCGTTGCTaaaacca                          >  2:452807/1‑145 (MQ=255)
                                                                                                                               aTCCAGCTGAGCTACGGATGCGTCGGGAAAATTAATTTTACGGCTAT‑‑TTTTGATACCGCTCCTAAAGCCATATCAATTAAGAGATGGTGCATCCGGGAGGATCACTCCCCCGGCCGCTC‑GGTCTTCCGGCCGGTTCTAAACCaagct                       >  2:194034/1‑144 (MQ=9)
                                                                                                                                 ccAGCTGAGCTACGGATGCGTCGGGAAAACTTATTCTACTGCTGA‑‑TATTGATACCGCTACTAAAGCCATATCAATTAAGAGATGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTCGGCCCTTC‑GGCCGGTGGCAAAGGAACGGTat                    >  1:123814/1‑148 (MQ=17)
                                                                                                                                 ccAGCTGAGCTACGGATGCGTCGGGAAAACTTATTCTACTGCTGA‑‑TATTGATACCGCTACTAAAGCCATATCAATTAAGAGATGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTC‑GCCCTTCGGGCCGGTGCTTAAACAACGGTatcc                  >  1:165544/1‑149 (MQ=17)
                                                                                                                                  cAGCTGAGCTACGGATGCGTCGGGAAAACTTATTCTACTGCTGA‑‑TATTGATACCGCTACTAAAGCCATATCAATTAAGAGATGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTC‑GCCCTTCGGGCCGTTGCTAAAGCAACGTTatcatc                <  2:261273/151‑1 (MQ=255)
                                                                                                                                       gAGCTACGGATGCATCGGG‑AAATTTATTTTACTGCTGA‑‑TATTGATACCGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTC‑GCCCTTCGGGCCGTTGCTAAAGCAACGTTATCCTCCCtgg           >  2:92226/1‑148 (MQ=11)
                                                                                                                                        aGCTACGGATGCGTCGGGAAAACTTATTCTACTGCTGA‑‑TATTGATACCGCTACTAAAGCCATATCAATTAAGAGATGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTC‑GCCCTTCGGGCCGTTGCTAAAGCAACGTTATCATCCCTAGt          <  2:473690/151‑1 (MQ=255)
                                                                                                                                          cTACGGATGCGTCGGGAAAACTTATTCTACTGCTGA‑‑TATTGATACCGCTACTAAAGCCATATCAATTAAGAGATGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTC‑GCCCTTCCGGCCGTTTCCAAAGCAACGTTATCCTCCCCAg           >  1:209650/1‑148 (MQ=17)
                                                                                                                                               gATGCGTCGGGAAAACTTATTCTACTGCTGA‑‑TATTGATACCGCTACTAAAGCCATATCAATTAAGAGATGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTC‑CCCCTTCTCGCCGGTGGTTAAGCCACGCTGTCCTCCCTGGTccccg     >  1:418443/1‑147 (MQ=17)
                                                                                                                                                aTGCGTCGGGAAAACTTATTCTACTGCTGA‑‑TATTGATACCGCTACTAAAGCCATATCAATTAAGAGATGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTC‑GCCCTTCGGGCCGTTGCTAAAGCAACGTTATCATCCCTAGTGCCTGCgg  <  2:227655/151‑1 (MQ=255)
                                                                                                                                                aTGCGTCGGGAAAACTTATTCTACTGCTGA‑‑TATTGATACCGCTACTAAAGCCATATCAATTAAGAGATGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTC‑GCCCTTCGGGCCGTGGCTTAAACACAGTTATCATCCCTAGGCCCTGCgg  >  1:129317/1‑151 (MQ=18)
                                                                                                                                                    |                                                                                                                                                     
ATCCTTCCTGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAAACTTATTCTACTGCTGA‑‑TATTGATACCGCTACTAAAGCCATATCAATTAAGAGATGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTC‑GCCCTTCGGGCCGTTGCTAAAGCAACGTTATCATCCCTAGTGCCTGCGG  >  NC_000913/2817713‑2818007

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A