Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F50 I1 R1
|
12 |
52.1 |
1626478 |
98.8% |
1606960 |
150.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
NC_000913 |
2,912,618 |
Δ10 bp |
coding (1025‑1034/2235 nt) |
relA ← |
(p)ppGpp synthetase I/GTP pyrophosphokinase |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
NC_000913 |
2912618 |
2912627 |
10 |
53 [0] |
[0] 54 |
relA |
(p)ppGpp synthetase I/GTP pyrophosphokinase |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
= 2912617 | 0 (0.000) | 53 (1.080) |
46/284 |
0.2 |
100% |
coding (1035/2235 nt) |
relA |
(p)ppGpp synthetase I/GTP pyrophosphokinase |
| ? | NC_000913 |
2912628 = |
0 (0.000) | coding (1024/2235 nt) |
relA |
(p)ppGpp synthetase I/GTP pyrophosphokinase |
GATK/CNVnator alignment
N/A
