Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F50 I1 R1
|
157 |
93.7 |
2947622 |
98.1% |
2891617 |
150.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,960,839 |
A→G |
R530R (CGT→CGC) |
recC ← |
exonuclease V (RecBCD complex), gamma chain |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,960,839 | 0 | A | G | 98.9%
| 333.7
/ ‑4.6
| 89 | R530R (CGT→CGC) | recC | exonuclease V (RecBCD complex), gamma chain |
| Reads supporting (aligned to +/- strand): ref base A (0/1); new base G (44/44); total (44/45) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01 |
GTGCCAGCCCGCGACGCCAGATGTTTAGCTGCATTAGCAGTGAAGCCAGATGCCCCACCAGTTCTGCAATTAAGCCGCTCGATTCATCATAAGGTAGAACCGATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATACGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAGCTCGCGAACGTTGTCGT‑CATCTATGCCCCAACGAATGCCGGATTCGTTGACCCACTGGCGTAAATAACGCAGCCCTTCTTCGGTGATGTCAAACCGC > NC_000913/2960691‑2960986
|
gtgCCAGCCCGCGACGCCAGATGTTTAGCTGCATTAGCAGTGAAGCCAGATGCCCCACCAGTTCTGCAATTAAGCCGCTCGATTCATCATAAGGTAGAACCGATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGcg > 1:903420/1‑151 (MQ=255)
gCCAGCCCGCGACGCCAGATGTTTAGCTGCATTAGCAGTGAAGCCAGATGCCCCACCAGTTCTGCAATTAAGCCGCTCGATTCATCATAAGGTAGAACCGATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATgcgc < 1:1093178/150‑1 (MQ=255)
gCCAGCCCGCGACGCCAGATGTTTAGCTGCATTAGCAGTGAAGCCAGATGCCCCACCAGTTCTGCAATTAAGCCGCTCGATTCATCATAAGGTAGAACCGATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATgcgc < 2:245578/150‑1 (MQ=255)
gCCAGCCCGCGACGCCAGATGTTTAGCTGCATTAGCAGTGAAGCCAGATGCCCCACCAGTTCTGCAATTAAGCCGCTCGATTCATCATAAGGTAGAACCGATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATAcgc < 1:1454429/150‑1 (MQ=255)
gCCCGCGACGCCAGATGTTTAGCTGCATTAGCAGTGAAGCCAGATGCCCCACCAGTTCTGCAATTAAGCCGCTCGATTCATCATAAGGTAGAACCGATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTc > 2:921793/1‑149 (MQ=255)
gCCCGCGACGCCAGATGTTTAGCTGCATTAGCAGTGAAGCCAGATGCCCCACCAGTTCTGCAATTAAGCCGCTCGATTCATCATAAGGTAGAACCGATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAg < 1:1408184/151‑1 (MQ=255)
ccGCGACGCCAGATGTTTAGCTGCATTAGCAGTGAAGCCAGATGCCCCACCAGTTCTGCAATTAAGCCGCTCGATTCATCATAAGGTAGAACCGATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGc > 1:768098/1‑151 (MQ=255)
cgcgACGCCAGATGTTTAGCTGCATTAGCAGTGAAGCCAGATGCCCCACCAGTTCTGCAATTAAGCCGCTCGATTCATCATAAGGTAGAACCGATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGcc > 2:865619/1‑151 (MQ=255)
gcgACGCCAGATGTTTAGCTGCATTAGCAGTGAAGCCAGATGCCCCACCAGTTCTGCAATTAAGCCGCTCGATTCATCATAAGGTAGAACCGATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCa < 1:759300/151‑1 (MQ=255)
cgACGCCAGATGTTTAGCTGCATTAGCAGTGAAGCCAGATGCCCCACCAGTTCTGCAATTAAGCCGCTCGATTCATCATAAGGTAGAACCGATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCa > 1:1015718/1‑150 (MQ=255)
aCGCCAGATGTTTAGCTGCATTAGCAGTGAAGCCAGATGCCCCACCAGTTCTGCAATTAAGCCGCTCGATTCATCATAAGGTAGAACCGATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAAt > 1:806207/1‑151 (MQ=255)
cGCCAGATGTTTAGCTGCATTAGCAGTGAAGCCAGATGCCCCACCAGTTCTGCAATTAAGCCGCTCGATTCATCATAAGGTAGAACCGATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATc < 1:1076323/151‑1 (MQ=255)
cAGATGTTTAGCTGCATTAGCAGTGAAGCCAGATGCCCCACCAGTTCTGCAATTAAGCCGCTCGATTCATCATAAGGTAGAACCGATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGcc > 1:1229948/1‑151 (MQ=255)
tttAGCTGCATTAGCAGTGAAGCCAGATGCCCCACCAGTTCTGCAATTAAGCCGCTCGATTCATCATAAGGTAGAACCGATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGgtgt > 2:318519/1‑151 (MQ=255)
tttAGCTGCATTAGCAGTGAAGCCAGATGCCCCACCAGTTCTGCAATTAAGCCGCTCGATTCATCATAAGGTAGAACCGATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGgtg > 2:1202376/1‑150 (MQ=255)
tAGCTGCATTAGCAGTGAAGCCAGATGCCCCACCAGTTCTGCAATTAAGCCGCTCGATTCATCATAAGGTAGAACCGATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGgtgtgt > 2:1110750/1‑151 (MQ=255)
aTTAGCAGTGAAGCCAGATGCCCCACCAGTTCTGCAATTAAGCCGCTCGATTCATCATAAGGTAGAACCGATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCgg > 1:1099862/1‑151 (MQ=255)
aGTGAAGCCAGATGCCCCACCAGTTCTGCAATTAAGCCGCTCGATTCATCATAAGGTAGAACCGATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCgg > 2:172115/1‑151 (MQ=255)
aGTGAAGCCAGATGCCCCACCAGTTCTGCAATTAAGCCGCTCGATTCATCATAAGGTAGAACCGATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCgg < 2:865687/151‑1 (MQ=255)
gTGAAGCCAGATGCCCCACCAGTTCTGCAATTAAGCCGCTCGATTCATCATAAGGTAGAACCGATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCggg > 2:703895/1‑151 (MQ=255)
tGAAGCCAGATGCCCCACCAGTTCTGCAATTAAGCCGCTCGATTCATCATAAGGTAGAACCGATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCgggg > 2:211963/1‑151 (MQ=255)
tGAAGCCAGATGCCCCACCAGTTCTGCAATTAAGCCGCTCGATTCATCATAAGGTAGAACCGATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCgggg > 1:1178985/1‑151 (MQ=255)
aaGCCAGATGCCCCACCAGTTCTGCAATTAAGCCGCTCGATTCATCATAAGGTAGAACCGATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAg < 1:878526/151‑1 (MQ=255)
aGCCAGATGCCCCACCAGTTCTGCAATTAAGCCGCTCGATTCATCATAAGGTAGAACCGATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGt > 2:947277/1‑151 (MQ=255)
cAGATGCCCCACCAGTTCTGCAATTAAGCCGCTCGATTCATCATAAGGTAGAACCGATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGTGGAGTTcc < 1:1462689/151‑1 (MQ=255)
gATGCCCCACCAGTTCTGCAATTAAGCCGCTCGATTCATCATAAGGTAGAACCGATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAg < 2:660416/151‑1 (MQ=255)
aTGCCCCACCAGTTCTGCAATTAAGCCGCTCGATTCATCATAAGGTAGAACCGATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAGc > 1:1312007/1‑151 (MQ=255)
aTGCCCCACCAGTTCTGCAATTAAGCCGCTCGATTCATCATAAGGTAGAACCGATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAGc > 1:1288565/1‑151 (MQ=255)
gCCCCACCAGTTCTGCAATTAAGCCGCTCGATTCATCATAAGGTAGAACCGATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAGCt < 2:1395708/150‑1 (MQ=255)
gCCCCACCAGTTCTGCAATTAAGCCGCTCGATTCATCATAAGGTAGAACCGATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAGCTc < 2:1009637/151‑1 (MQ=255)
ccaGTTCTGCAATTAAGCCGCTCGATTCATCATAAGGTAGAACCGATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAGCTCGCGAAc < 1:481803/151‑1 (MQ=255)
aGTTCTGCAATTAAGCCGCTCGATTCATCATAAGGTAGAACCGATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAGCTCGCGAACGt < 1:1244664/151‑1 (MQ=255)
gCAATTAAGCCGCTCGATTCATCATAAGGTAGAACCGATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAGCTCGCGAACGTTgtcgt > 1:620231/1‑151 (MQ=255)
gCAATTAAGCCGCTCGATTCATCATAAGGTAGAACCGATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAGCTCGCGAACGTTgtcg < 2:1022448/150‑1 (MQ=255)
aaGCCGCTCGATTCATCATAAGGTAGAACCGATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAGCTCGCGAACGTTGTCGT‑CATCTa < 1:200635/151‑1 (MQ=255)
aaGCCGCTCGATTCATCATAAGGTAGAACCGATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAGCTCGCGAACGTTGTCGT‑CATCTa < 1:1469739/151‑1 (MQ=255)
aGCCGCTCGATTCATCATAAGGTAGAACCGATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAGCTCGCGAACGTTGTCGT‑CATCTAt < 1:1064208/151‑1 (MQ=255)
ccGCTCGATTCATCATAAGGTAGAACCGATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAGCTCGCGAACGTTGTCGT‑CATCTATGc > 1:935239/1‑151 (MQ=255)
ccGCTCGATTCATCATAAGGTAGAACCGATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAGCTCGCGAACGTTGTCGT‑CATCTATGc < 1:1441289/151‑1 (MQ=255)
gCTCGATTCATCATAAGGTAGAACCGATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAGCTCGCGAACGTTGTCGT‑CATCTATGccc > 2:1144705/1‑151 (MQ=255)
gCTCGATTCATCATAAGGTAGAACCGATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAGCTCGCGAACGTTGTCGT‑CATCTATGccc > 2:1403411/1‑151 (MQ=255)
cGATTCATCATAAGGTAGAACCGATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAGCTCGCGAACGTTGTCGT‑CATCTATGCCCCaa < 2:486471/151‑1 (MQ=255)
gATTCATCATAAGGTAGAACCGATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAGCTCGCGAACGTTGTCGT‑CATCTATGCCCCa < 2:1393772/149‑1 (MQ=255)
gATTCATCATAAGGTAGAACCGATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAGCTCGCGAACGTTGTCGT‑CATCTATGCCCCAAc < 2:393664/151‑1 (MQ=255)
aTTCATCATAAGGTAGAACCGATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAGCTCGCGAACGTTGTCGT‑CATCTATGCCCCAACg < 1:1157841/151‑1 (MQ=255)
aTTCATCATAAGGTAGAACCGATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAGCTCGCGAACGTTGTCGT‑CATCTATGCCCCAACg < 1:508159/151‑1 (MQ=255)
tcatcaTAAGGTAGAACCGATTGCCACTCGCCCAGCGCGCTCTCCATCGCGTAGACCAACAACATGCGCGTCAGGCCAAATCGCCAGGAGTGTTGTGCGGTGGTGGGGAGTTCCAGCTCGCGAACGTTGTCGT‑CATCTAAGCACCAACGa > 2:1164145/1‑150 (MQ=255)
catcatAAGGTAGAACCGATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAGCTCGCGAACGTTGTCGT‑CATCTATGCCCCAACGaa < 1:153324/150‑1 (MQ=255)
catcatAAGGTAGAACCGATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAGCTCGCGAACGTTGTCGT‑CATCTATGCCCCAACGAAt < 1:381648/151‑1 (MQ=255)
catcatAAGGTAGAACCGATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCAGGGAGTTCCAGCTCGCGAACGTTGTCGT‑CATCTATGCCCCAACGAAt < 1:598955/151‑1 (MQ=255)
catcatAAGGTAGAACCGATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCC‑AATCGCCAGGGGGGGTGTCCCGGGGCGGGGGGTTTCCGCTCCCGAACGGTGTCGTCCTTCTA‑GCCCCAACGaa > 2:123698/1‑149 (MQ=255)
catAAGGTAGAACCGATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAGCTCGCGAACGTTGTCGT‑CATCTATGCCCCAACGAATGcc > 2:807961/1‑151 (MQ=255)
catAAGGTAGAACCGATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAGCTCGCGAACGTTGTCGT‑CATCTATGCCCCAACGAATGc < 2:1398202/150‑1 (MQ=255)
atAAGGTAGAACCGATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAGCTCGCGCACGTTGTCGT‑CATCTATGCCCCAACGAATGCCg > 2:807122/1‑151 (MQ=255)
aaGGTAGAACCGATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAGCTCGCGAACGTTGTCGT‑CATCTATGCCCCAACGAATGCCgg < 1:211987/150‑1 (MQ=255)
ggTAGAACCGATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAGCTCGCGAACGTTGTCGT‑CATCTATGCCCCAACGAATGCCGGAtt < 2:969454/151‑1 (MQ=255)
ggTAGAACCGATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAGCTCGCGAACGTTGTCGT‑CATCTATGCCCCAACGAATGCCGGAtt < 1:752502/151‑1 (MQ=255)
gTAGAACCGATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAGCTCGCGAACGTTGTCGT‑CATCTATGCCCCAACGAATGCCGGATTc < 2:767987/151‑1 (MQ=255)
tAGAACCGATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAGCTCGCGAACGTTGTCGT‑CATCTATGCCCCAACGAATGCCGGATTCg > 1:1165233/1‑151 (MQ=255)
aGAACCGATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAGCTCGCGAACGTTGTCGT‑CATCTATGCCCCAACGAATGCCGGATTCg < 2:1078383/150‑1 (MQ=255)
aCCGATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAGCTCGCGAACGTTGTCGT‑CATCTATGCCCCAACGAATGCCGGATTCGTTGa < 1:209218/151‑1 (MQ=255)
gATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAGCTCTCGAACGTTGTCGT‑CATCTATGCCCCACCGAATGCCGGATTCGTTGAccc < 1:52341/151‑1 (MQ=255)
gATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAGCTCGCGAACGTTGTCGT‑CATCTATGCCCCAACGAATGCCGGATTCGTTGAccc > 2:721821/1‑151 (MQ=255)
aTTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAGCTCGCGAACGTTGTCGT‑CATCTATGCCCCAACGAATGCCGGATTCGTTGAccc > 1:1273081/1‑150 (MQ=255)
cACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAGCTCGCGAACGTTGTCGT‑CATCTATGCCCCAACGAATGCCGGATTCGTTGACCCACTGGc < 2:1262855/151‑1 (MQ=255)
aCTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAGCTCGCGAACGTTGTCGT‑CATCTATGCCCCAACGAATGCCGGATTCGTTGACCCACTGGCg < 1:243838/151‑1 (MQ=255)
aCTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAGCTCGCGAACGTTGTCGT‑CATCTATGCCCCAACGAATGCCGGATTCGTTGACCCACTGGCg > 1:1088719/1‑151 (MQ=255)
aCTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAGCTCGCGAACGTTGTCGT‑CATCTATGCCCCAACGAATGCCGGATTCGTTGACCCACTGGCg > 2:1407824/1‑151 (MQ=255)
cGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAGCTCGCGAACGTTGTCGT‑CATCTATGCCCCAACGAATGCCGGATTCGTTGACCCACTGGCGt < 2:1159235/149‑1 (MQ=255)
cTGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAGCTCGCGAACGTTGTCGT‑CATCTATGCCCCAACGAATGCCGGATTCGTTGACCCACTGGCGTAAATa > 2:1198008/1‑150 (MQ=255)
tGCGCGCTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAGCTCGCGAACGTTGTCGT‑CATCTATGCCCCAACGAATGCCGGATTCGTTGACCCACTGGCGTAAATAAc > 2:288721/1‑151 (MQ=255)
gcgcgcTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAGCTCGCGAACGTTGTCGT‑CATCTATGCCCCAACGAATGCCGGATTCGTTGACCCACTGGCGTAAATaa < 2:1178889/149‑1 (MQ=255)
cgcgcTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAGCTCGCGAACGTTGTCGT‑CATCTATGCCCCAACGAATGCCGGATTCGTTGACCCACTGGCGTAAATAACGc > 2:293625/1‑151 (MQ=255)
gcgcTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAGCTCGCGAACGTTGTCGT‑CATCTATGCCCCAACGAATGCCGGATTCGTTGACCCACTGGCGTAAATAACGCa < 2:903335/151‑1 (MQ=255)
gcTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAGCTCGCGAACGTTGTCGT‑CATCTATGCCCCAACGAATGCCGGATTCGTTGACCCACTGGCGTAAATAACGCAGc > 1:1258795/1‑151 (MQ=255)
gcTCTCCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGCGTTGTCCGGTGGCGGGGAGTTCCAGCTCGCGAACGTTGTCGT‑CATCTATGCCCCAACGCATGCCGGATTCGTTGACACACTGGCGTAAATAACGCAGc > 1:395275/1‑151 (MQ=255)
tctcCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAGCTCGCGAACGTTGTCGT‑CATCTATGCCCCAACGAATGCCGGATTCGTTGACCCACTGGCGTAAATAACGCAGccc > 2:1186811/1‑151 (MQ=255)
ctcCATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAGCTCGCGAACGTTGTCGT‑CATCTATGCCCCAACGAATGCCGGATTCGTTGACCCACTGGCGTAAATAACGCAGCCct > 2:1463844/1‑151 (MQ=255)
ccATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAGCTCGCGAACGTTGTCGT‑CATCTATGCCCCAACGAATGCCGGATTCGTTGACCCACTGGCGTAAATAACGCAGCCct < 1:619703/149‑1 (MQ=255)
ccATCGCGTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAGCTCGCGAACGTTGTCGT‑CATCTATGCCCCAACGAATGCCGGATTCGTTGACCCACTGGCGTAAATAACGCAGCCct < 1:651110/149‑1 (MQ=255)
cgcgTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAGCTCGCGAACGTTGTCGT‑CATCTATGCCCCAACGAATGCCGGATTCGTTGACCCACTGGCGTAAATAACGCAGCCCTTCTTCg > 1:288221/1‑151 (MQ=255)
cgcgTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAGCTCGCGAACGTTGTCGT‑CATCTATGCCCCAACGAATGCCGGATTCGTTGACCCACTGGCGTAAATAACGCAGCCCTTCTTCg > 1:1243311/1‑151 (MQ=255)
gcgTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAGCTCGCGAACGTTGTCGT‑CATCTATGCCCCAACGAATGCCGGATTCGTTGACCCACTGGCGTAAATAACGCAGCCCTTCTTCgg > 1:1130186/1‑151 (MQ=255)
cgTAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAGCTCGCGAACGTTGTCGT‑CATCTATGCCCCAACGAATGCCGGATTCGTTGACCCACTGGCGTAAATAACGCAGCCCTTCTTCGGt > 1:682257/1‑151 (MQ=255)
tAGCCCAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAGCTCGCGAACGTTGTCGT‑CATCTATGCCCCAACGAATGCCGGATTCGTTGACCCACTGGCGTAAATAACGCAGCCCTTCTTCGGTg > 2:1134279/1‑150 (MQ=255)
cccAACAACATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAGCTCGCGAACGTTGTCGT‑CATCTATGCCCCAACGAATGCCGGATTCGTTGACCCACTGGCGTAAATAACGCAGCCCTTCTTCGGTGATGt > 2:955953/1‑151 (MQ=255)
aacaacATGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAGCTCGCGAACGTTGTCGT‑CATCTATGCCCCAACGAATGCCGGATTCGTTGACCCACTGGCGTAAATAACGCAGCCCTTCTTCGGTGATGTCaa < 2:613734/151‑1 (MQ=255)
acaTGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAGCTCGCGAACGTTGTCGT‑CATCTATGCCCCAACGAATGCCGGATTCGTTGACCCACTGGCGTAAATAACGCAGCCCTTCTTCGGTGATGTCAAACcg < 2:806128/151‑1 (MQ=255)
acaTGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAGCTCGCGAACGTTGTCGT‑CATCTATGCCCCAACGAATGCCGGATTCGTTGACCCACGGGCGTAAATAACGCAGCCCTTCTTCGGTGATGTCAAACcg < 2:423940/151‑1 (MQ=255)
caTGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAGCTCGCGAACGTTGTCGT‑CATCTATGCCCCAACGAATGCCGGATTCGTTGACCCACTGGCGTAAATAACGCAGCCCTTCTTCGGTGATGTCAAACcgc < 2:559331/151‑1 (MQ=255)
caTGCGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAGCTCGCGAACGTTGTCGT‑CATCTATGCCCCAACGAATGCCGGATTCGTTGACCCACTGGCGTAAATAACGCAGCCCTTCTTCGGTGATGTCAAACcgc < 1:736377/151‑1 (MQ=255)
|
GTGCCAGCCCGCGACGCCAGATGTTTAGCTGCATTAGCAGTGAAGCCAGATGCCCCACCAGTTCTGCAATTAAGCCGCTCGATTCATCATAAGGTAGAACCGATTGCCACTCGCCCTGCGCGCTCTCCATCGCGTAGCCCAACAACATACGCGTCAGGCCAAATCGCCAGGTGTGTTGTCCGGTGGCGGGGAGTTCCAGCTCGCGAACGTTGTCGT‑CATCTATGCCCCAACGAATGCCGGATTCGTTGACCCACTGGCGTAAATAACGCAGCCCTTCTTCGGTGATGTCAAACCGC > NC_000913/2960691‑2960986
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
