Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F50 I1 R1
|
157 |
93.7 |
2947622 |
98.1% |
2891617 |
150.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,691,676 |
T→C |
Y311C (TAC→TGC) |
bcsB ← |
regulator of cellulose synthase, cyclic di‑GMP binding |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,691,676 | 0 | T | C | 99.0%
| 396.6
/ NA
| 104 | Y311C (TAC→TGC) | bcsB | regulator of cellulose synthase, cyclic di‑GMP binding |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base C (47/56); total (48/56) |
| Fisher's exact test for biased strand distribution p-value = 4.62e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 104 total aligned reads displayed.
CGTACGGCTTACGCGGTAGCAGCGGTTTCACTTCATTCACTACCACGCTTTCACCACGGAACAGAATGTTACCCTGAGCGATACCTTTCGCTGCCTGCAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGTAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATCGCGCAGGAAGTCCGGCCGTTTGTCGTTGGTTGCAAAGACAATGGCATTGCGATCCGGCAGTTGGTTATAGAGTACCGGGAAGTTCTGC > NC_000913/3691533‑3691822
|
cGTACGGCTTACGCGGTAGCAGCGGTTTCACTTCATTCACTACCACGCTTTCACCACGGAACAGAATGTTACCCTGAGCGATACCTTTCGCTGCCTGCAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGAtt < 2:560606/151‑1 (MQ=255)
cGTACGGCTTACGCGGTAGCAGCGGTTTCACTTCATTCACTACCACGCTTTCACCACGGAACAGAATGTTACCCTGAGCGATACCTTTCGCTGCCTGCAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGAt < 1:168610/150‑1 (MQ=255)
gCTTACGCGGTAGCAGCGGTTTCACTTCATTCACTACCACGCTTTCACCACGGAACAGAATGTTACCCTGAGCGATACCTTTCGCTGCCTGCAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCgg < 2:1282756/151‑1 (MQ=255)
gCTTACGCGGTAGCAGCGGTTTCACTTCATTCACTACCACGCTTTCACCACGGAACAGAATGTTACCCTGAGCGATACCTTTCGCTGCCTGCAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCgg < 1:914521/151‑1 (MQ=255)
aCGCGGTAGCAGCGGTTTCACTTCATTCACTACCACGCTTTCACCACGGAACAGAATGTTACCCTGAGCGATACCTTTCGCTGCCTGCAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATgg < 2:1347148/151‑1 (MQ=255)
cgGTAGCAGCGGTTTCACTTCATTCACTACCACGCTTTCACCACGGAACAGAATGTTACCCTGAGCGATACCTTTCGCTGCCTGCAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGtt > 1:168666/1‑150 (MQ=255)
ggTAGCAGCGGTTTCACTTCATTCACTACCACGCTTTCACCACGGAACAGAATGTTACCCTGAGCGATACCTTTCGCTGCCTGCAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTaa < 2:588603/151‑1 (MQ=255)
agcagcGGTTTCACTTCATTCACTACCACGCTTTCACCACGGAACAGAATGTTACCCTGAGCGATACCTTTCGCTGCCTGCAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAatc > 2:801150/1‑150 (MQ=255)
ggTTTCACTTCATTCACTACCACGCTTTCACCACGGAACAGAATGTTACCCTGAGCGATACCTTTCGCTGCCTGCAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCa > 2:299396/1‑150 (MQ=255)
ggTTTCACTTCATTCACTACCACGCTTTCACCACGGAACAGAATGTTACCCTGAGCGATACCTTTCGCTGCCTGCAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCa > 1:1035997/1‑150 (MQ=255)
gTTTCACTTCATTCACTACCACGCTTTCACCACGGAACAGAATGTTACCCTGAGCGATACCTTTCGCTGCCTGCAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAAt > 1:644851/1‑151 (MQ=255)
tttCACTTCATTCACTACCACGCTTTCACCACGGAACAGAATGTTACCCTGAGCGATACCTTTCGCTGCCTGCAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATc > 2:1143118/1‑151 (MQ=255)
tCACTTCATTCACTACCACGCTTTCACCACGGAACAGAATGTTACCCTGAGCGATACCTTTCGCTGCCTGCAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCa < 1:229931/150‑1 (MQ=255)
tCACTTCATTCACTACCACGCTTTCACCACGGAACAGAATGTTACCCTGAGCGATACCTTTCGCTGCCTGCAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCAc > 1:1122111/1‑151 (MQ=255)
cACTTCATTCACTACCACGCTTTCACCACGGAACAGAATGTTACCCTGAGCGATACCTTTCGCTGCCTGCAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCAc < 2:887674/150‑1 (MQ=255)
cTTCATTCACTACCACGCTTTCACCACGGAACAGAATGTTACCCTGAGCGATACCTTTCGCTGCCTGCAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCgg > 1:248043/1‑151 (MQ=255)
tcattcaCTACCACGCTTTCACCACGGAACAGAATGTTACCCTGAGCGATACCTTTCGCTGCCTGCAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCgg < 2:52549/149‑1 (MQ=255)
cattcaCTACCACGCTTTCACCACGGAACAGAATGTTACCCTGAGCGATACCTTTCGCTGCCTGCAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCgggg < 1:1292258/150‑1 (MQ=255)
attcaCTACCACGCTTTCACCACGGAACAGAATGTTACCCTGAGCGATACCTTTCGCTGCCTGCAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCt < 2:1441219/151‑1 (MQ=255)
attcaCTACCACGCTTTCACCACGGAACAGAATGTTACCCTGAGCGATACCTTTCGCTGCCTGCAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCt < 1:801229/151‑1 (MQ=255)
caCTACCACGCTTTCACCACGGAACAGAATGTTACCCTGAGCGATACCTTTCGCTGCCTGCAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCtttt < 2:1360890/151‑1 (MQ=255)
tACCACGCTTTCACCACGGAACAGAATGTTACCCTGAGCGATACCTTTCGCTGCCTGCAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTAcc > 2:403808/1‑151 (MQ=255)
cACGCTTTCACCACGGAACAGAATGTTACCCTGAGCGATACCTTTCGCTGCCTGCAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTAccgcc < 1:486718/151‑1 (MQ=255)
cACGCTTTCACCACGGAACAGAATGTTACCCTGAGCGATACCTTTCGCTGCCTGCAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTAccgcc > 1:633288/1‑151 (MQ=255)
gCTTTCACCACGGAACAGAATGTTACCCTGAGCGATACCTTTCGCTGCCTGCAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCgg > 2:58147/1‑150 (MQ=255)
gCTTTCACCACGGAACAGAATGTTACCCTGAGCGATACCTTTCGCTGCCTGCAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCgg > 2:975272/1‑150 (MQ=255)
cTTTCACCACGGAACAGAATGTTACCCTGAGCGATACCTTTCGCTGCCTGCAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGga < 2:977562/150‑1 (MQ=255)
tttCACCACGGAACAGAATGTTACCCTGAGCGATACCTTTCGCTGCCTGCAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGgatg > 2:601972/1‑151 (MQ=255)
ttCACCACGGAACAGAATGTTACCCTGAGCGATACCTTTCGCTGCCTGCAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGgatg > 2:377531/1‑150 (MQ=255)
ttCACCACGGAACAGAATGTTACCCTGAGCGATACCTTTCGCTGCCTGCAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGgatg < 2:436288/150‑1 (MQ=255)
ttCACCACGGAACAGAATGTTACCCTGAGCGATACCTTTCGCTGCCTGCAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGgat < 1:1046041/149‑1 (MQ=255)
tCACCACGGAACAGAATGTTACCCTGAGCGATACCTTTCGCTGCCTGCAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGgatga < 1:1061911/150‑1 (MQ=255)
caccacGGAACAGAATGTTACCCTGAGCGATACCTTTCGCTGCCTGCAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGgatgat < 2:1364034/150‑1 (MQ=255)
caccacGGAACAGAATGTTACCCTGAGCGATACCTTTCGCTGCCTGCAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGgatgat < 1:98244/150‑1 (MQ=255)
ccacGGAACAGAATGTTACCCTGAGCGATACCTTTCGCTGCCTGCAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATcgc < 2:835442/151‑1 (MQ=255)
ccacGGAACAGAATGTTACCCTGAGCGATACCTTTCGCTGCCTGCAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATcgc > 2:1220682/1‑151 (MQ=255)
ccacGGAACAGAATGTTACCCTGAGCGATACCTTTCGCTGCCTGCAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATcgc < 1:810995/151‑1 (MQ=255)
ccacGGAACAGAATGTTACCCTGAGCGATACCTTTCGCTGCCTGCAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATcgc < 2:1303801/151‑1 (MQ=255)
ggAACAGAATGTTACCCTGAGCGATACCTTTCGCTGCCTGCAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATCgcgc > 1:619413/1‑149 (MQ=255)
aaCAGAATGTTACCCTGAGCGATACCTTTCGCTGCCTGCAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATCGCGCAgg > 1:878777/1‑150 (MQ=255)
gAATGTTACCCTGAGCGATACCTTTCGCTGCCTGCAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATCGCGCAGGAAGTc > 2:423621/1‑151 (MQ=255)
aaTGTTACCCTGAGCGATACCTTTCGCTGCCTGCAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATCGCGCAGGAAGTcc > 1:526555/1‑151 (MQ=255)
gTTACCCTGAGCGATACCTTTCGCTGCCTGCAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATCGCGCAGGAAGTCCGGc < 2:587124/151‑1 (MQ=255)
gTTACCCTGAGCGATACCTTTCGCTGCCTGCAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATCGCGCAGGAAGTCCGGc > 1:312878/1‑151 (MQ=255)
cTGAGCGATACCTTTCGCTGCCTGCAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATCGCGCAGGAAGTCCGGCCGTTTg > 1:373359/1‑151 (MQ=255)
gAGCGATACCTTTCGCTGCCTGCAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATCGCGCAGGAAGTCCGGCCGTTTg < 1:284576/149‑1 (MQ=255)
aGCGATACCTTTCGCTGCCTGCAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATCGCGCAGGAAGTCCGGCCGTTTGTCg > 1:1291357/1‑151 (MQ=255)
aGCGATACCTTTCGCTGCCTGCAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATCGCGCAGGAAGTCCGGCCGTTTGTCg > 2:1368659/1‑151 (MQ=255)
gATACCTTTCGCTGCCTGCAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATCGCGCAGGAAGTCCGGCCGTTTGTCgttg > 1:669072/1‑151 (MQ=255)
tACCTTTCGCTGCCTGCAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATCGCGCAGGAAGTCCGGCCGTTTGTCgttgg > 2:186722/1‑150 (MQ=255)
cGCTGCCTGCAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATCGCGCAGGAAGTCCGGCCGTTTGTCGTTGGTTGCaa > 1:528205/1‑149 (MQ=255)
cGCTGCCTGCAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATCGCGCAGGAAGTCCGGCCGTTTGTCGTTGGTTGCaa > 2:782820/1‑149 (MQ=255)
gCTGCCTGCAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATCGCGCAGGAAGTCCGGCCGTTTGTCGTTGGTTGCaa > 2:1242497/1‑148 (MQ=255)
gCTGCCTGCAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATCGCGCAGGAAGTCCGGCCGTTTGTCGTTGGTTGCAAAGa < 1:412120/151‑1 (MQ=255)
ctgcctgcAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATCGCGCAGGAAGTCCGGCCGTTTGTCGTTGGTTGCAAAGAc > 2:725161/1‑151 (MQ=255)
gcctgcAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATCGCGCAGGAAGTCCGGCCGTTTGTCGTTGGTTGCAAAGACa > 1:644775/1‑150 (MQ=255)
ctgcAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATCGCGCAGGAAGTCCGGCCGTTTGTCGTTGGTTGCAAAGACAATg > 1:10423/1‑151 (MQ=255)
tgcAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATCGCGCAGGAAGTCCGGCCGTTTGTCGTTGGTTGCAAAGACAATgg > 1:1209670/1‑151 (MQ=255)
gcAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATCGCGCAGGAAGTCCGGCCGTTTGTCGTTGGTTGCAAAGACAATg < 2:14331/149‑1 (MQ=255)
gcAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATCGCGCAGGAAGTCCGGCCGTTTGTCGTTGGTTGCAAAGACAATGGc < 2:644778/151‑1 (MQ=255)
gcAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATCGCGCAGGAAGTCCGGCCGTTTGTCGTTGGTTGCAAAGACAATGGc > 1:432057/1‑151 (MQ=255)
cAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATCGCGCAGGAAGTCCGGCCGTTTGTCGTTGGTTGCAAAGACAATGGc > 1:758203/1‑150 (MQ=255)
cAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATCGCGCAGGAAGTCCGGCCGTTTGTCGTTGGTTGCAAAGACAATGGc > 2:1364743/1‑150 (MQ=255)
cAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATCGCGCAGGAAGTCCGGCCGTTTGTCGTTGGTTGCAAAGACAATGGCa < 1:58156/151‑1 (MQ=255)
cAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATCGCGCAGGAAGTCCGGCCGTTTGTCGTTGGTTGCAAAGACAATGGCa < 1:1416865/151‑1 (MQ=255)
aaCAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATCGCGCAGGAAGTCCGGCCGTTTGTCGTTGGTTGCAAAGACAATGGCa < 2:426320/150‑1 (MQ=255)
aaCAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATCGCGCAGGAAGTCCGGCCGTTTGTCGTTGGTTGCAAAGACAATGGCAt > 1:181804/1‑151 (MQ=255)
aaCAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATCGCGCAGGAAGTCCGGCCGTTTGTCGTTGGTTGCAAAGACAATGGCAt > 1:1381391/1‑151 (MQ=255)
cAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATCGCGCAGGAAGTCCGGCCGTTTGTCGTTGGTTGCAAAGACAATGGCATTg > 1:36430/1‑151 (MQ=255)
aGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATCGCGCAGGAAGTCCGGCCGTTTGTCGTTGGTTGCAAAGACAATGGCATTGc < 1:299429/151‑1 (MQ=255)
ggTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATCGCGCAGGAAGTCCGGCCGTTTGTCGTTGGTTGCAAAGACAATGGCATTGCg < 2:1335441/151‑1 (MQ=255)
gTCTTTGTCGTCACGACCAAACGCCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATCGCGCAGGAAGTCCGGCCGTTTGTCGTTGGTTGCAAAGACAATGGCATTGCGa < 1:100977/151‑1 (MQ=255)
tttGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATCGCGCAGGAAGTCCGGCCGTTTGTCGTTGGTTGCAAAGACAATGGCATTGCGa < 2:1291252/148‑1 (MQ=255)
ttGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATCGCGCAGGAAGTCCGGCCGTTTGTCGTTGGTTGCAAAGACAATGGCATTGCGAt < 2:852966/148‑1 (MQ=255)
ttGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATCGCGCAGGAAGTCCGGCCGTTTGTCGTTGGTTGCAAAGACAATGGCATTGCGAt < 1:588141/148‑1 (MQ=255)
ttGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATCGCGCAGGAAGTCCGGCCGTTTGTCGTTGGTTGCAAAGACAATGGCATTGCGATcc < 2:168644/150‑1 (MQ=255)
tGTCGTCACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATCGCGCAGGAAGTCCGGCCGTTTGTCGTTGGTTGCAAAGACAATGGCATTGCGATCCg < 2:413591/150‑1 (MQ=255)
tcgtcACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATCGCGCAGGAAGTCCGGCCGTTTGTCGTTGGTTGCAAAGACAATGGCATTGCGATCCGGc > 2:313047/1‑150 (MQ=255)
cACGACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATCGCGCAGGAAGTCCGGCCGTTTGTCGTTGGTTGCAAAGACAATGGCATTGCGATCCGGCAGtt < 2:703172/150‑1 (MQ=255)
tcGACCAAACACCACCAGCAGTTTGACGTAAGGCTTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATCGCGCAGGGAGTCCGGCCGTTTGTCGTTGGGTGCAAAGACAATGGCATTGAGATCTGGCAGTTgg > 2:59422/2‑151 (MQ=255)
ggccAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATCGCGCAGGAAGTCCGGCCGTTTGTCGTTGGTTGCAAAGACAATGGCATTGCGATCCCGCAGTTGGtt < 2:1192102/149‑1 (MQ=255)
gACCAAACGCCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGAACGCGCAGGAAGTCCGGCCGTTTGTCGTTGGTTGCAAAGACAATGGCATTGCGATCCGGCAGTTGGt < 1:1337702/150‑1 (MQ=255)
gACCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATCGCGCAGGAAGTCCGGCCGTTTGTCGTTGGTTGCAAAGACAATGGCATTGCGATCCGGCAGTTGGtt > 2:489006/1‑151 (MQ=255)
aCCAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATCGCGCAGGAAGTCCGGCCGTTTGTCGTTGGTTGCAAAGACAATGGCATTGCGATCCGGCAGTTGGTta < 2:868794/151‑1 (MQ=255)
ccAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATCGCGCAGGAAGTCCGGCCGTTTGTCGTTGGTTGCAAAGACAATGGCATTGCGATCCGGCAGTTGGTtat < 1:403099/151‑1 (MQ=255)
cAAACACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATCGCGCAGGAAGTCCGGCCGTTTGTCGTTGGTTGCAAAGACAATGGCATTGCGATCCGGCAGTTGGTtata < 2:1039505/151‑1 (MQ=255)
aaaCACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATCGCGCAGGAAGTCCGGCCGTTTGTCGTTGGTTGCAAAGACAATGGCATTGCGATCCGGCAGTTGGTTATag < 2:1139251/151‑1 (MQ=255)
aaCACCGCCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATCGCGCAGGAAGTCCGGCCGTTTGTCGTTGGTTGCAAAGACAATGGCATTGCGATCCGGCAGTTGGTTATaga < 2:291128/151‑1 (MQ=255)
aaCACCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATCGCGCAGGAAGTCCGGCCGTTTGTCGTTGGTTGCAAAGACAATGGCATTGCGATCCGGCAGTTGGTtat > 1:97432/1‑148 (MQ=255)
acacCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATCGCGCAGGAAGTCCGGCCGTTTGTCGTTGGTTGCAAAGACAATGGCATTGCGATCCGGCAGTTGGTTATagag < 2:1197376/151‑1 (MQ=255)
acacCACCAGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATCGCGCAGGAAGTCCGGCCGTTTGTCGTTGGTTGCAAAGACAATGGCATTGCGATCCGGCAGTTGGTTATag > 1:1011798/1‑149 (MQ=255)
ccaccaGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATCGCGCAGGAAGTCCGGCCGTTTGTCGTTGGTTGCAAAGACAATGGCATTGCGATCCGGCAGTTGGTTATAGAGTAc > 1:983324/1‑151 (MQ=255)
ccaccaGCAGTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATCGCGCAGGAAGTCCGGCCGTTTGTCGTTGGTTGCAAAGACAATGGCATTGCGATCCGGCAGTTGGTTATAGAGTAc > 1:898612/1‑151 (MQ=255)
agcagTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATCGCGCAGGAAGTCCGGCCGTTTGTCGTTGGTTGCAAAGACAATGGCATTGCGATCCGGCAGTTGGTTATAGAGTACCGGGa < 1:1189080/151‑1 (MQ=255)
gTTTGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATCGCGCAGGAAGTCCGGCCGTTTGTCGTTGGTTGCAAAGACAATGGCATTGCGATCCGGCAGTTGGTTATAGAGTAACGGGAAGtt < 2:1122013/151‑1 (MQ=255)
tttGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATCGCGCAGGAAGTCCGGCCGTTTGTCGTTGGTTGCAAAGACAATGGCATTGCGATCCGGCAGTTGGTTATAGAGTACCGGGAAGtt < 2:782906/150‑1 (MQ=255)
tttGACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATCGCGCAGGAAGTCCGGCCGTTTGTCGTTGGTTGCAAAGACAATGGCATTGCGATCCGGCAGTTGGTTATAGAGTACCGGGAAGTTc > 1:851468/1‑151 (MQ=255)
gACGCAAGGATTCTGCGTATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATCGCGCAGGAAGTCCGGCCGTTTGTCGTTGGTTGCAAAGACAATGGCATTGCGATCCGGCAGTTGGTTATAGAGTACCGGGAAGTTCTGc < 2:1035897/151‑1 (MQ=255)
gACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATCGCGCAGGAAGTCCGGCCGTTTGTCGTTGGTTGCAAAGACAATGGCATTGCGATCCGGCAGTTGGTTATAGAGTACCGGGAAGTTCTg < 2:474824/150‑1 (MQ=255)
gACGCAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATCGCGCAGGAAGTCCGGCCGTTTGTCGTTGGTTGCAAAGACAATGGCATTGCGATCCGGCAGTTGGTTATAGAGTACCGGGAAGTTCTg < 1:1143214/150‑1 (MQ=255)
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CGTACGGCTTACGCGGTAGCAGCGGTTTCACTTCATTCACTACCACGCTTTCACCACGGAACAGAATGTTACCCTGAGCGATACCTTTCGCTGCCTGCAACAGGTCTTTGTCGTCACGACCAAACACCACCAGCAGTTTGACGTAAGGATTCTGCGGATGGTTAATCATCTCAATCACCGGGGCTTTTACCGCCGGATGATCGCGCAGGAAGTCCGGCCGTTTGTCGTTGGTTGCAAAGACAATGGCATTGCGATCCGGCAGTTGGTTATAGAGTACCGGGAAGTTCTGC > NC_000913/3691533‑3691822
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
