Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F50 I2 R1
|
209 |
44.2 |
1360995 |
98.7% |
1343302 |
150.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,391,786 |
A→G |
A81A (GCT→GCC) |
tldD ← |
putative peptidase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,391,786 | 0 | A | G | 98.3%
| 202.5
/ ‑3.8
| 58 | A81A (GCT→GCC) | tldD | putative peptidase |
| Reads supporting (aligned to +/- strand): ref base A (1/0); new base G (31/26); total (32/26) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 |
CATGCTTTGCAGCGGATCTACCGAGGTATACAACGGGCTATGCTCTACCGCGCCCAGCGTCTGTACTTTACCATCACCACTATCACGGACGATGGTGCGCGCCGCTTGCGCACTCTGTTCCAGCGCCAGCAGGCTGATTTGGTCAGCGTAAGCAAATCCGGTTTTTTCACCGCTGATTGCACGCACACCAACGCCCTGATCGATGTTGTAAGAACCATCTTTAATAATGCGGTCTTCTAAAACCCAGGATTCGTGATAGCTCGACTGAAAATAGAGATCGCCATAATCAAGGCG > NC_000913/3391642‑3391935
|
cATGCTTTGCAGCGGATCTACCGAGGTATACAACGGGCTATGCTCTACCGCGCCCAGCGTCTGTACTTTACCATCACCACTATCACGGACGATGGTGCGCGCCGCTTGCGCACTCTGTTCCAGCGCCAGCAGGCTGATTTGGTCGGCGTa < 2:612707/150‑1 (MQ=255)
tGCAGCGGATCTACCGAGGTATACAACGGGCTATGCTCTACCGCGCCCAGCGTCTGTACTTTACCATCACCACTATCACGGACGATGGTGCGCGCCGCTTGCGCACTCTGTTCCAGCGCCAGCAGGCTGATTTGGTCGGCGTAAGCAAAt < 1:325249/150‑1 (MQ=255)
aGCGGATCTACCGAGGTATACAACGGGCTATGCTCTACCGCGCCCAGCGTCTGTACTTTACCATCACCACTATCACGGACGATGGTGCGCGCCGCTTGCGCACTCTGTTCCAGCGCCAGCAGGCTGATTTGGTCGGCGTAAGCAAATCCgg > 1:321478/1‑151 (MQ=255)
cGGATCTACCGAGGTATACAACGGGCTATGCTCTACCGCGCCCAGCGTCTGTACTTTACCATCACCACTATCACGGACGATGGTGCGCGCCGCTTGCGCACTCTGTTCCAGCGCCAGCAGGCTGATTTGGTCGGCGTAAGCAAATCCGGtt > 1:651421/1‑151 (MQ=255)
tACCGAGGTATACAACGGGCTATGCTCTACCGCGCCCAGCGTCTGTACTTTACCATCACCACTATCACGGACGATGGTGCGCGCCGCTTGCGCACTCTGTTCCAGCGCCAGCAGGCTGATTTGGTCGGCGTAAGCAAATCCGGTTTTTTc > 1:347337/1‑150 (MQ=255)
aCCGAGGTATACAACGGGCTATGCTCTACCGCGCCCAGCGTCTGTACTTTACCATCACCACTATCACGGACGATGGTGCGCGCCGCTTGCGCACTCTGTTCCAGCGCCAGCAGGCTGATTTGGTCGGCGTAAGCAAATCCGGtttttt < 2:28403/148‑1 (MQ=255)
aCCGAGGTATACAACGGGCTATGCTCTACCGCGCCCAGCGTCTGTACTTTACCATCACCACTATCACGGACGATGGTGCGCGCCGCTTGCGCACTCTGTTCCAGCGCCAGCAGGCTGATTTGGTCGGCGTAAGCAAATCCGGtttt < 2:621418/146‑1 (MQ=255)
ccGAGGTATACAACGGGCTATGCTCTACCGCGCCCAGCGTCTGTACTTTACCATCACCACTATCACGGACGATGGTGCGCGCCGCTTGCGCACTCTGTTCCAGCGCCAGCAGGCTGATTTGGTCGGCGTAAGCAAATCCGGTTTTTTCAcc > 2:560043/1‑151 (MQ=255)
cGAGGTATACAACGGGCTATGCTCTACCGCGCCCAGCGTCTGTACTTTACCATCACCACTATCACGGACGATGGTGCGCGCCGCTTGCGCACTCTGTTCCAGCGCCAGCAGGCTGATTTGGTCGGCGTAAGCAAATCCGGTTTTTTCACCg < 2:294185/151‑1 (MQ=255)
gAGGTATACAACGGGCTATGCTCTACCGCGCCCAGCGTCTGTACTTTACCATCACCACTATCACGGACGATGGTGCGCGCCGCTTGCGCACTCTGTTCCAGCGCCAGCAGGCTGATTTGGTCGGCGTAAGCAAATCCGGTTTTTTCACCGc > 2:526440/1‑151 (MQ=255)
gAGGTATACAACGGGCTATGCTCTACCGCGCCCAGCGTCTGTACTTTACCATCACCACTATCACGGACGATGGTGCGCGCCGCTTGCGCACTCTGTTCCAGCGCCAGCAGGCTGATTTGGTCGGCGTAAGCAAATCCGGTTTTTTCACCGc < 1:588112/151‑1 (MQ=255)
ataCAACGGGCTATGCTCTACCGCGCCCAGCGTCTGTACTTTACCATCACCACTATCACGGACGATGGTGCGCGCCGCTTGCGCACTCTGTTCCAGCGCCAGCAGGCTGATTTGGTCGGCGTAAGCAAATCCGGTTTTTTCACCGCTGAtt > 2:532439/1‑151 (MQ=255)
ataCAACGGGCTATGCTCTACCGCGCCCAGCGTCTGTACTTTACCATCACCACTATCACGGACGATGGTGCGCGCCGCTTGCGCACTCTGTTCCAGCGCCAGCAGGCTGATTTGGTCGGCGTAAGCAAATCCGGTTTTTTCACCGCTGAtt < 2:421243/151‑1 (MQ=255)
ataCAACGGGCTATGCTCTACCGCGCCCAGCGTCTGTACTTTACCATCACCACTATCACGGACGATGGTGCGCGCCGCTTGCGCACTCTGTTCCAGCGCCAGCAGGCTGATTTGGTCGGCGTAAGCAAATCCGGTTTTTTCACCGCTGAt < 1:524125/150‑1 (MQ=255)
aaCGGGCTATGCTCTACCGCGCCCAGCGTCTGTACTTTACCATCACCACTATCACGGACGATGGTGCGCGCCGCTTGCGCACTCTGTTCCAGCGCCAGCAGGCTGATTTGGTCGGCGTAAGCAAATCCGGTTTTTTCACCGCTGATTgcac > 1:467563/1‑151 (MQ=255)
aaCGGGCTATGCTCTACCGCGCCCAGCGTCTGTACTTTACCATCACCACTATCACGGACGATGGTGCGCGCCGCTTGCGCACTCTGTTCCAGCGCCAGCAGGCTGATTTGGTCGGCGTAAGCAAATCCGGTTTTTTCACCGCTGATTgcac < 2:639927/151‑1 (MQ=255)
cGGGCTATGCTCTACCGCGCCCAGCGTCTGTACTTTACCATCACCACTATCACGGACGATGGTGCGCGCCGCTTGCGCACTCTGTTCCAGCGCCAGCAGGCTGATTTGGTCGGCGTAAGCAAATCCGGTTTTTTCACCGCTGATTgcacgc > 1:413611/1‑151 (MQ=255)
cGGGCTATGCTCTACCGCGCCCAGCGTCTGTACTTTACCATCACCACTATCACGGACGATGGTGCGCGCCGCTTGCGCACTCTGTTCCAGCGCCAGCAGGCTGATTTGGTCGGCGTAAGCAAATCCGGTTTTTTCACCGCTGATTgcacgc > 2:473419/1‑151 (MQ=255)
tATGCTCTACCGCGCCCAGCGTCTGTACTTTACCATCACCACTATCACGGACGATGGTGCGCGCCGCTTGCGCACTCTGTTCCAGCGCCAGCAGGCTGATTTGGTCGGCGTAAGCAAATCCGGTTTTTTCACCGCTGATTGCACGCACAcc > 2:132261/1‑151 (MQ=255)
ccGCGCCCCGCGTCTGTACTTTACCCACACCACTATCACGGACGATGGTGCGCGCCGCTTGCGCACTCTGTTCCAGCGCCTGCAGGCTGATTTGGTCGGCGTAAGCAAATCCGGTTTTTTCTCCGCTGATTGCGCGCACACCAACGCCCt < 2:458019/150‑1 (MQ=255)
ccGCGCCCAGCGTCTGTACTTTACCATCACCACTATCACGGACGATGGTGCGCGCCGCTTGCGCACTCTGTTCCAGCGCCAGCAGGCTGATTTGGTCGGCGTAAGCAAATCCGGTTTTTTCACCGCTGATTGCACGCACACCAACGCCCTg < 2:96166/151‑1 (MQ=255)
cgcgCCCAGCGTCTGTACTTTACCATCACCACTACCACGGACGATGGTGCGCGCCGCTTGCGCACTCTGTTCCAGCGCCAGCAGGCTGATTTGGTCGGCGTAAGCAAATCCGGTTTTTTCACCGCTGATTGCACGCACACCAACGCCCTGa < 2:44326/151‑1 (MQ=255)
gcgcCCAGCGTCTGTACTTTACCATCACCACTATCACGGACGATGGTGCGCGCCGCTTGCGCACTCTGTTCCAGCGCCAGCAGGCTGATTTGGTCGGCGTAAGCAAATCCGGTTTTTTCACCGCTGATTGCACGCACACCAACGCCCTGAt > 1:378227/1‑151 (MQ=255)
cAGCGTCTGTACTTTACCATCACCACTATCACGGACGATGGTGCGCGCCGCTTGCGCACTCTGTTCCAGCGCCAGCAGGCTGATTTGGTCGGCGTAAGCAAATCCGGTTTTTTCACCGCTGATTGCACGCACACCAACGCCCTGATCGAtg > 1:582532/1‑151 (MQ=255)
cAGCGTCTGTACTTTACCATCACCACTATCACGGACGATGGTGCGCGCCGCTTGCGCACTCTGTTCCAGCGCCAGCAGGCTGATTTGGTCGGCGTAAGCAAATCCGGTTTTTTCACCGCTGATTGCACGCACACCAACGCCCTGATCGAtg > 2:36180/1‑151 (MQ=255)
aGCGTCTGTACTTTACCATCACCACTATCACGGACGATGGTGCGCGCCGCTTGCGCACTCTGTTCCAGCGCCAGCAGGCTGATTTGGTCGGCGTAAGCAAATCCGGTTTTTTCACCGCTGATTGCACGCACACCAACGCCCTGATCGAtgt < 1:94871/151‑1 (MQ=255)
gCGTCTGTACTTTACCATCACCACTATCACGGACGATGGTGCGCGCCGCTTGCGCACTCTGTTCCAGCGCCAGCAGGCTGATTTGGTCGGCGTAAGCAAATCCGGTTTTTTCACCGCTGATTGCACGCACACCAACGCCCTGATCGAtgtt < 2:379651/151‑1 (MQ=255)
cGTCTGTACTTTACCATCACCACTATCACGGACGATGGTGCGCGCCGCTTGCGCACTCTGTTCCAGCGCCAGCAGGCTGATTTGGTCGGCGTAAGCAAATCCGGTTTTTTCACCGCTGATTGCACGCACACCAACGCCCTGATCGAtgttg > 1:37896/1‑151 (MQ=255)
cGTCTGTACTTTACCATCACCACTATCACGGACGATGGTGCGCGCCGCTTGCGCACTCTGTTCCAGCGCCAGCAGGCTGATTTGGTCGGCGTAAGCAAATCCGGTTTTTTCACCGCTGATTGCACGCACACCAACGCCCTGATCGAtgttg > 1:668322/1‑151 (MQ=255)
gTACTTTACCATCACCACTATCACGGACGATGGTGCGCGCCGCTTGCGCACTCTGTTCCAGCGCCAGCAGGCTGATTTGGTCGGCGTAAGCAAATCCGGTTTTTTCACCGCTGATTGCACGCACACCAACGCCCTGATCGATGTTGTa > 1:39867/1‑148 (MQ=255)
aCTTTACCATCACCACTATCACGGACGATGGTGCGCGCCGCTTGCGCACTCTGTTCCAGCGCCAGCAGGCTGATTTGGTCGGCGTAAGCAAATCCGGTTTTTTCACCGCTGATTGCACGCACACCAACGCCCTGATCGATGTTGTAAGaa < 2:17757/150‑1 (MQ=255)
ccATCACCACTATCACGGACGATGGTGCGCGCCGCTTGCGCACTCTGTTCCAGCGCCAGCAGGCTGATTTGGTCGGCGTAAGCAAATCCGGTTTTTTCACCGCTGATTGCACGCACACCAACGCCCTGATCGATGTTGTAAGAACCATCtt < 1:14564/151‑1 (MQ=255)
ccacTATCACGGACGATGGTGCGCGCCGCTTGCGCACTCTGTTCCAGCGCCAGCAGGCTGATTTGGTCGGCGTAAGCAAATCCGGTTTTTTCACCGCTGATTGCACGCACACCAACGCCCTGATCGATGTTGTAAGAACCATCTTtaata < 1:351946/150‑1 (MQ=255)
aTCACGGACGATGGTGCGCGCCGCTTGCGCACTCTGTTCCAGCGCCAGCAGGCTGATTTGGTCGGCGTAAGCAAATCCGGTTTTTTCACCGCTGATTGCACGCACACCAACGCCCTGATCGATGTTGTAAGAACCATCTTTAATAATGCgg > 2:94399/1‑151 (MQ=255)
aTCACGGACGATGGTGCGCGCCGCTTGCGCACTCTGTTCCAGCGCCAGCAGGCTGATTTGGTCGGCGTAAGCAAATCCGGTTTTTTCACCGCTGATTGCACGCACACCAACGCCCTGATCGATGTTGTAAGAACCATCTTTAATAATGCgg > 1:355555/1‑151 (MQ=255)
tCACGGACGATGGTGCGCGCCGCTTGCGCACTCTGTTCCAGCGCCAGCAGGCTGATTTGGTCGGCGTAAGCAAATCCGGTTTTTTCACCGCTGATTGCACGCACACCAACGCCCTGATCGATGTTGTAAGAACCATCTTTAATAATGCGGt > 2:503330/1‑151 (MQ=255)
cGGACGATGGTGCGCGCCGCTTGCGCACTCTGTTCCAGCGCCAGCAGGCTGATTTGGTCGGCGTAAGCAAATCCGGTTTTTTCACCGCTGATTGCACGCACACCAACGCCCTGATCGATGTTGTAAGAACCATCTTTAATAATGCGGtctt < 2:530260/151‑1 (MQ=255)
cGGACGATGGTGCGCGCCGCTTGCGCACTCTGTTCCAGCGCCAGCAGGCTGATTTGGTCGGCGTAAGCAAATCCGGTTTTTTCACCGCTGATTGCACGCACACCAACGCCCTGATCGATGTTGTAAGAACCATCTTTAATAATGCGGtctt < 1:567546/151‑1 (MQ=255)
aCGATGGTGCGCGCCGCTTGCGCACTCTGTTCCAGCGCCAGCAGGCTGATTTGGTCGGCGTAAGCAAATCCGGTTTTTTCACCGCTGATTGCACGCACACCAACGCCCTGATCGATGTTGTAAGAACCATCTTTAATAATGCGGtcttct > 2:307304/1‑150 (MQ=255)
gATGGTGCGCGCCGCTTGCGCACTCTGTTCCAGCGCCAGCAGGCTGATTTGGTCGGCGTAAGCAAATCCGGTTTTTTCACCGCTGATTGCACGCACACCAACGCCCTGATCGATGTTGTAAGAACCATCTTTAATAATGCGGTCTTCTaa > 2:225303/1‑150 (MQ=255)
cgccgcTTGCGCACTCTGTTCCAGCGCCAGCAGGCTGATTTGGTCGGCGTAAGCAAATCCGGTTTTTTCACCGCTGATTGCACGCACACCAACGCCCTGATCGATGTTGTAAGAACCATCTTTAATAATGCGGTCTTCTAAAACCCAGGAt < 1:289972/151‑1 (MQ=255)
cgcTTGCGCACTCTGTTCCAGCGCCAGCAGGCTGATTTGGTCGGCGTAAGCAAATCCGGTTTTTTCACCGCTGATTGCACGCACACCAACGCCCTGATCGATGTTGTAAGAACCATCTTTAATAATGCGGTCTTCTAAAACCCAGGATTCg < 1:402769/151‑1 (MQ=255)
gcTTGCGCACTCTGTTCCAGCGCCAGCAGGCTGATTTGGTCGGCGTAAGCAAATCCGGTTTTTTCACCGCTGATTGCACGCACACCAACGCCCTGATCGATGTTGTAAGAACCATCTTTAATAATGCGGTCTTCTAAAACCCAGGATTCGt > 1:29719/1‑151 (MQ=255)
gcgcACTCTGTTCCAGCGCCAGCAGGCTGATTTGGTCGGCGTAAGCAAATCCGGTTTTTTCACCGCTGATTGCACGCACACCAACGCCCTGATCGATGTTGTAAGAACCATCTTTAATAATGCGGTCTTCTAAAACCCAGGATTCGTGATa < 1:361242/151‑1 (MQ=255)
ctctGTTCCAGCGCCAGCAGGCTGATTTGGTCGGCGTAAGCAAATCCGGTTTTTTCACCGCTGATTGCACGCACACCAACGCCCTGATCGATGTTGTAAGAACCATCTTTAATAATGCGGTCTTCTAAAACCCAGGATTCGTGATAGCTCg > 1:59779/1‑151 (MQ=255)
gTTCCAGCGCCAGCAGGCTGATTTGGTCGGCGTAAGCAAATCCGGTTTTTTCACCGCTGATTGCACGCACACCAACGCCCTGATCGATGTTGTAAGAACCATCTTTAATAATGCGGTCTTCTAAAACCCAGGATTCGTGATAGCTCGACTg < 1:413911/151‑1 (MQ=255)
tCCAGCGCCAGCAGGCTGATTTGGTCGGCGTAAGCAAATCCGGTTTTTTCACCGCTGATTGCACGCACACCAACGCCCTGATCGATGTTGTAAGAACCATCTTTAATAATGCGGTCTTCTAAAACCCAGGATTCGTGATAGCTCGACTGa > 1:406544/1‑150 (MQ=255)
cagcagGCTGATTTGGTCGGCGTAAGCAAATCCGGTTTTTTCACCGCTGATTGCACGCACACCAACGCCCTGATCGATGTTGTAAGAACCATCTTTAATAATGCGGTCTTCTAAAACCCAGGATTCGTGATAGCTCGACTGAAAATag > 1:15307/1‑148 (MQ=255)
agGCTGATTTGGTCGGCGTAAGCAAATCCGGTTTTTTCACCGCTGATTGCACGCACACCAACGCCCTGATCGATGTTGTAAGAACCATCTTTAATAATGCGGTCTTCTAAAACCCAGGATTCGTGATAGCTCGACTGAAAATAGAGATCGc > 2:237831/1‑151 (MQ=255)
agGCTGATTTGGTCGGCGTAAGCAAATCCGGTTTTTTCACCGCTGATTGCACGCACACCAACGCCCTGATCGATGTTGTAAGAACCATCTTTAATAATGCGGTCTTCTAAAACCCAGGATTCGTGATAGCTCGACTGAAAATAGAGATCGc < 1:556596/151‑1 (MQ=255)
agGCTGATTTGGTCGGCGTAAGCAAATCCGGTTTTTTCACCGCTGATTGCACGCACACCAACGCCCTGATCGATGTTGTAAGAACCATCTTTAATAATGCGGTCTTCTAAAACCCAGGATTCGTGATAGCTCGACTGAAAATAGAGATCGc > 1:38640/1‑151 (MQ=255)
gCTGATTTGGTCGGCGTAAGCAAATCCGGTTTTTTCACCGCTGATTGCACGCACACCAACGCCCTGATCGATGTTGTAAGAACCATCTTTAATAATGCGGTCTTCTAAAACCCAGGATTCGTGATAGCTCGACTGAAAATAGAGATCGcc > 2:291806/1‑150 (MQ=255)
tGATTTGGTCGGCGTAAGCAAATCCGGTTTTTTCACCGCTGATTGCACGCACACCAACGCCCTGATCGATGTTGTAAGAACCATCTTTAATAATGCGGTCTTCTAAAACCCAGGATTCGTGATAGCTCGACTGAAAATAGAGATCGCCAt > 1:542125/1‑150 (MQ=255)
gATTTGGTCGGCGTAAGCAAATCCGGTTTTTTCACCGCTGATTGCACGCACACCAACGCCCTGATCGATGTTGTAAGAACCATCTTTAATAATGCGGTCTTCTAAAACCCAGGATTCGTGATAGCTCGACTGAAAATAGAGATCGCCATaa < 1:628192/151‑1 (MQ=255)
gATTTGGTCGGCGTAAGCAAATCCGGTTTTTTCACCGCTGATTGCACGCACACCAACGCCCTGATCGATGTTGTAAGAACCATCTTTAATAATGCGGTCTTCTAAAACCCAGGATTCGTGATAGCTCGACTGAAAATAGAGATCGCCATaa < 1:388139/151‑1 (MQ=255)
tttGGTCGGCGTAAGCAAATCCGGTTTTTTCACCGCTGATTGCACGCACACCAACGCCCTGATCGATGTTGTAAGAACCATC‑TTAATAATGCGGTCTTCTAAAACCCAGGATTCGTGATAGCTCGACTGAAAATAGAGATCGCCATAATc > 1:503905/1‑150 (MQ=255)
ttGGTCGGCGTAAGCAAATCCGGTTTTTTCACCGCTGATTGCACGCACACCAACGCCCTGATCGATGTTGTAAGAACCATCTTTAATAATGCGGTCTTCTAAAACCCAGGATTCGTGATAGCTCGACTGAAAATAGAGATCGCCATAATc > 2:576090/1‑150 (MQ=255)
cAGCGTAAGCAAATCCGGTTTTTTCACCGCTGATTGCACGCACACCAACGCCCTGATCGATGTTGTAAGAACCATCTTTAATAATGCGGTCTTCTAAAACCCAGGATTCGTGATAGCTCGACTGAAAATAGAGATCGCCATAATCAAGGCg > 1:569328/1‑151 (MQ=255)
|
CATGCTTTGCAGCGGATCTACCGAGGTATACAACGGGCTATGCTCTACCGCGCCCAGCGTCTGTACTTTACCATCACCACTATCACGGACGATGGTGCGCGCCGCTTGCGCACTCTGTTCCAGCGCCAGCAGGCTGATTTGGTCAGCGTAAGCAAATCCGGTTTTTTCACCGCTGATTGCACGCACACCAACGCCCTGATCGATGTTGTAAGAACCATCTTTAATAATGCGGTCTTCTAAAACCCAGGATTCGTGATAGCTCGACTGAAAATAGAGATCGCCATAATCAAGGCG > NC_000913/3391642‑3391935
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
