Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F50 I3 R1 105 107.9 3491495 95.1% 3320411 150.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,634,685 G→A intergenic (‑227/‑156) yhiL ← / → yhiM pseudogene, DUF4049 family protein/acid resistance protein, inner membrane

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,634,6850GA100.0% 310.5 / NA 80intergenic (‑227/‑156)yhiL/yhiMpseudogene, DUF4049 family protein/acid resistance protein, inner membrane
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (49/31);  total (49/31)

ATAATAATACTTATATGTTCGCTGATTTTAAGCACCGAGACTATCCGGTCTTTTACCAAATAATGAAGAATAATCCCTCCCTGGAAGATAATTGTAAAAAACAACAGCATAAGAATTAATCTTAGGATAAATTTTTATTTATCATGGCCTTTTGAACGCTGAAAAGTAGCGCTCTGCAAAGTAAACCCCGCTATAGTTATGCTATGCATTTGTCTTTAATGATATCTCGTCATTATATTAACAGGATGAAATTATCATTAATGCATATTTCAATATTAGCAGGGATACCTGAGG  >  NC_000913/3634539‑3634832
                                                                                                                                                  |                                                                                                                                                   
ataataataCTTATATGTTCGCTGATTTTAAGCACCGAGACTATCCGGTCTTTTACCAAATAATGAAGAATAATCCCTCCCTGGAAGATAATTGTAAAAAACAACAGCATAAGAATTAATCTTAGGATAAATTTTTATTTATCATGACCtt                                                                                                                                                 <  1:737902/151‑1 (MQ=255)
ataataataCTTATATGTTCGCTGATTTTAAGCACCGAGACTATCCGGTCTTTTACCAAATAATGAAGAATAATCCCTCCCTGGAAGATAATTGTAAAAAACAACAGCATAAGAATTAATCTTAGGATAAATTTTTATTTATCATGACCtt                                                                                                                                                 <  1:1060868/151‑1 (MQ=255)
    taataCTTATATGTTCGCTGATTTTAAGCACCGAGACTATCCGGTCTTTTACCAAATAATGAAGAATAATCCCTCCCTGGAAGATAATTGTAAAAAACAACAGCATAAGAATTAATCTTAGGATAAATTTTTATTTATCATGACCTTTTg                                                                                                                                              >  2:335799/1‑150 (MQ=255)
     aataCTTATATGTTCGCTGATTTTAAGCACCGAGACTATCCGGTCTTTTACCAAATAATGAAGAATAATCCCTCCCTGGAAGATAATTGTAAAAAACAACAGCATAAGAATTAATCTTAGGATAAATTTTTATTTATCATGACCTTTTGa                                                                                                                                             >  1:135914/1‑150 (MQ=255)
      ataCTTATATGTTCGCTGATTTTAAGCACCGAGACTATCCGGTCTTTTACCAAATAATGAAGAATAATCCCTCCCTGGAAGATAATTGTAAAAAACAACAGCATAAGAATTAATCTTAGGATAAATTTTTATTTATCATGACCTTTTGAAc                                                                                                                                           >  2:137727/1‑151 (MQ=255)
           tataTGTTCGCTGATTTTAAGCACCGAGACTATCCGGTCTTTTACCAAATAATGAAGAATAATCCCTCCCTGGAAGATAATTGTAAAAAACAACAGCATAAGAATTAATCTTAGGATAAATTTTTATCTATCATGACCTTTTGAACGCTg                                                                                                                                       >  3:93970/1‑150 (MQ=255)
              atGTTCGCTGATTTTAAGCACCGAGACTATCCGGTCTTTTACCAAATAATGAAGAATAATCCCTCCCTGGAAGATAATTGTAAAAAACAACAGCATAAGAATTAATCTTAGGATAAATTTTTATTTATCATGACCTTTTGAACGCTGaaaa                                                                                                                                   <  2:28299/151‑1 (MQ=255)
              atGTTCGCTGATTTTAAGCACCGAGACTATCCGGTCTTTTACCAAATAATGAAGAATAATCCCTCCCTGGAAGATAATTGTAAAAAACAACAGCATAAGAATTAATCTTAGGATAAATTTTTATTTATCATGACCTTTTGAACGCTGaaa                                                                                                                                    >  1:251136/1‑150 (MQ=255)
               tGTTCGCTGATTTTAAGCACCGAGACTATCCGGTCTTTTACCAAATAATGAAGAATAATCCCTCCCTGGAAGATAATTGTAAAAAACAACAGCATAAGAATTAATCTTAGGATAAATTTTTATTTATCATGACCTTTTGAACGCTGaaaa                                                                                                                                   <  4:179386/150‑1 (MQ=255)
               tGTTCGCTGATTTTAAGCACCGAGACTATCCGGTCTTTTACCAAATAATGAAGAATAATCCCTCCCTGGAAGATAATTGTAAAAAACAACAGCATAAGAATTAATCTTAGGATAAATTTTTATTTATCATGACCTTTTGAACGCTGaaaa                                                                                                                                   >  3:179384/1‑150 (MQ=255)
               tGTTCGCTGATTTTAAGCACCGAGACTATCCGGTCTTTTACCAAATAATGAAGAATAATCCCTCCCTGGAAGATAATTGTAAAAAACAACAGCATAAGAATTAATCTTAGGATAAATTTTTATTTATCATGACCTTTTGAACGCTGaaa                                                                                                                                    >  1:406902/1‑149 (MQ=255)
                gTTCGCTGATTTTAAGCACCGAGACTATCCGGTCTTTTACCAAATAATGAAGAATAATCCCTCCCTGGAAGATAATTGTAAAAAACAACAGCATAAGAATTAATCTTAGGATAAATTTTTATTTATCATGACCTTTTGAACGCTGAAAAg                                                                                                                                  >  2:820717/1‑150 (MQ=255)
                gTTCGCCTACTTTACGCACCTCGACTATCTGGTCTTTTACCAAATAATGAAGAATAATACCTCCCTGGAAGATAATTGTAAAAAACAACAGCATAAGAATTAATCTTAGGATAAATTTTTATTTATCATGACCTTTTGAACGCTGAAAAg                                                                                                                                  >  2:443714/1‑150 (MQ=255)
                  tCGCTGATTTTAAGCACCGAGACTATCCGGTCTTTTACCAAATAATGAAGAATAATCCCTCCCTGGAAGATAATTGTAAAAAACAACAGCATAAGAATTAATCTTAGGATAAATTTTTATTTATCATGACCTTTTGAACGCTGAAAAGt                                                                                                                                 >  2:1096547/1‑149 (MQ=255)
                   cGCTGATTTTAAGCACCGAGACTATCCGGTCTTTTACCAAATAATGAAGAATAATCCCTCCCTGGAAGATAATTGTAAAAAACAACAGCATAAGAATTAATCTTAGGATAAATTTTTATTTATCATGACCTTTTGAACGCTGAAAAGTAgc                                                                                                                              >  2:1190066/1‑151 (MQ=255)
                      tGATTTTAAGCACCGAGACTATCCGGTCTTTTACCAAATAATGAAGAATAATCCCTCCCTGGAAGATAATTGTAAAAAACAACAGCATAAGAATTAATCTTAGGATAAATTTTTATTTATCATGACCTTTTGAACGCTGAAAAGTAGCGct                                                                                                                           >  1:1068747/1‑151 (MQ=255)
                      tGATTTTAAGCACCGAGACTATCCGGTCTTTTACCAAATAATGAAGAACAATCCCTCCCTGGAAGATAATTGTAAAAAACAACAGCATAAGAATTAATCTTAGGATAAATTTTTATTTATCATGACCTTTTGAACGCTGAAAAGTAGCGct                                                                                                                           >  2:736605/1‑151 (MQ=255)
                       gATTTTAAGCACCGAGACTATCCGGTCTTTTACCAAATAATGAAGAATAATCCCTCCCTGGAAGATAATTGTAAAAAACAACAGCATAAGAATTAATCTTAGGATAAATTTTTATTTATCATGACCTTTTGAACGCTGAAAAGTAGCGctc                                                                                                                          >  2:1247529/1‑151 (MQ=255)
                        aTTTTAAGCACCGAGACTATCCGGTCTTTTACCAAATAATGAAGAATAATCCCTCCCTGGAAGATAATTGTAAAAAACAACAGCATAAGAATTAATCTTAGGATAAATTTTTATTTATCATGACCTTTTGAACGCTGAAAAGTAGCGctct                                                                                                                         >  1:1058615/1‑151 (MQ=255)
                            tAAGCACCGAGACTATCCGGTCTTTTACCAAATAATGAAGAATAATCCCTCCCTGGAAGATAATTGTAAAAAACAACAGCATAAGAATTAATCTTAGGATAAATTTTTATTTATCATGACCTTTTGAACGCTGAAAAGTAGCGCTCTGCa                                                                                                                      >  4:368112/1‑150 (MQ=255)
                              aGCACCGAGACTATCCGGTCTTTTACCAAATAATGAAGAATAATCCCTCCCTGGAAGATAACTGTAAAAAACAACAGCATAAGAATTAATCTTAGGATAAATTTTTATTTATCATGACCTTTTGAACGCTGAAAAGTAGCGCTCTGCaa                                                                                                                     >  1:627192/1‑149 (MQ=255)
                                 aCCGAGACTATCCGGTCTTTTACCAAATAATGAAGAATAATCCCTCCCTGGAAGATAATTGTAAAAAACAACAGCATAAGAATTAATCTTAGGATAAATTTTTATTTATCATGACCTTTTGAACGCTGAAAAGTAGCGCTCTGCAAAGTa                                                                                                                 >  2:693869/1‑150 (MQ=255)
                                   cGAGACTATCCGGTCTTTTACCAAATAATGAAGAATAATCCCTCCCTGGAAGATAATTGTAAAAAACAACAGCATAAGAATTAATCTTAGGATAAATTTTTATTTATCATGACCTTTTGAACGCTGAAAAGTAGCGCTCTGCAAAGTAAAc                                                                                                              >  2:624824/1‑151 (MQ=255)
                                      gaCTATCCGGTCTTTTACCAAATAATGAAGAATAATCCCTCCCTGGAAGATAATTGTAAAAAACAACAGCATAAGAATTAATCTTAGGATAAATTTTTATTTATCATGACCTTTTGAACGCTGAAAAGTAGCGCTCTGCAAAGTAAAcccc                                                                                                           <  2:217314/151‑1 (MQ=255)
                                          aTCCGGTCTTTTACCAAATAATGAAGAATAATCCCTCCCTGGAAGATAATTGTAAAAAACAACAGCATAAGAATTAATCTTAGGATAAATTTTTATTTATCATGACCTTTTGAACGCTGAAAAGTAGCGCTCTGCAAAGTAATCCCCGCta                                                                                                       <  1:176624/151‑1 (MQ=255)
                                            ccGGTCTTTTACCAAATAATGAAGAATAATCCCTCCCTGGAAGATAATTGTAAAAAACAACAGCATAAGAATTAATCTTAGGATAAATTTTTATTTATCATGACCTTTTGAACGCTGAAAAGTAGCGCTCTGCAAAGTAAACCCCGCtat                                                                                                      >  1:983218/1‑150 (MQ=255)
                                                  ttttACCAAATAATGAAGAATAATCCCTCCCTGGAAGATAATTGTAAAAAACAACAGCATAAGAATTAATCTTAGGATAAATTTTTATTTATCATGACCTTTTGAACGCTGAAAAGTAGCGCTCTGCAAAGTAAACCCCGCTATAGTtatg                                                                                               >  1:295109/1‑151 (MQ=255)
                                                   tttACCAAATAATGAAGAATAATCCCTCCCTGGAAGATAATTGTAAAAAACAACAGCATAAGAATTAATCTTAGGATAAATTTTTATTTATCATGACCTTTTGAACGCTGAAAAGTAGCGCTCTGCAAAGTAAACCCCGCTATAGTtatg                                                                                               <  2:688579/150‑1 (MQ=255)
                                                   tttACCAAATAATGAAGAATAATCCCTCCCTGGAAGATAATTGTAAAAAACAACAGCATAAGAATTAATCTTAGGATAAATTTTTATTTATCATGACCTTTTGAACGCTGAAAAGTAGCGCTCTGCAAAGTAAACCCCGCTATAGTta                                                                                                 <  1:572289/148‑1 (MQ=255)
                                                    ttACCAAATAATGAAGAATAATCCCTCCCTGGAAGATAATTGTAAAAAACAACAGCATAAGAATTAATCTTAGGATAAATTTTTATTTATCATGACCTTTTGAACGCTGAAAAGTAGCGCTCTGCAAAGTAAACCCCGCTATAGTtatgct                                                                                             >  1:421261/1‑151 (MQ=255)
                                                    ttACCAAATAATGAAGAATAATCCCTCCCTGGAAGATAATTGTAAAAAACAACAGCATAAGAATTAATCTTAGGATAAATTTTTATTTATCATGACCTTTTGAACGCTGAAAAGTAGCGCTCTGCAAAGTAAACCCCGCTATAGTtatgc                                                                                              <  1:54966/150‑1 (MQ=255)
                                                      aCCAAATAATGAAGAATAATCCCTCCCTGGAAGATAATTGTAAAAAACAACAGCATAAGAATTAATCTTAGGATAAATTTTTATTTATCATGACCTTTTGAACGCTGAAAAGTAGCGCTCTGCAAAGTAAACCCCGCTATAGTtatgctat                                                                                           <  2:406831/151‑1 (MQ=255)
                                                       ccAAATAATGAAGAATAATCCCTCCCTGGAAGATAATTGTAAAAAACAACAGCATAAGAATTAATCTTAGGATAAATTTTTATTTATCATGACCTTTTGAACGCTGAAAAGTAGCGCTCTGCAAAGTAAACCCCGCTATAGTtatgctatg                                                                                          <  2:1176250/151‑1 (MQ=255)
                                                       ccAAATAATGAAGAATAATCCCTCCCTGGAAGATAATTGTAAAAAACAACAGCATAAGAATTAATCTTAGGATAAATTTTTATTTATCATGACCTTTTGAACGCTGAAAAGTAGCGCTCTGCAAAGTAAACCCCGCTATAGTtatgctatg                                                                                          >  1:270187/1‑151 (MQ=255)
                                                        cAAATAATGAAGAATAATCCCTCCCTGGAAGATAATTGTAAAAAACAACAGCATAAGAATTAATCTTAGGATAAATTTTTATTTATCATGACCTTTTGAACGCTGAAAAGTAGCGCTCTGCAAAGTAAACCCCGCTATAGTtatgctatgc                                                                                         >  2:233935/1‑151 (MQ=255)
                                                            taatGAAGAATAATCCCTCCCTGGAAGATAATTGTAAAAAACAACAGCATAAGAATTAATCTTAGGATAAATTTTTATTTATCATGACCTTTTGAACGCTGAAAAGTAGCGCTCTGCAAAGTAAACCCCGCTATAGTTATGCTATGCAttt                                                                                     >  2:922587/1‑151 (MQ=255)
                                                             aatGAAGAATAATCCCTCCCTGGAAGATAATTGTAAAAAACAACAGCATAAGAATTAATCTTAGGATAAATTTTTATTTATCATGACCTTTTGAACGCTGAAAAGTAGCGCTCTGCAAAGTAAACCCCGCTATAGTTATGCTATGCAttt                                                                                     <  1:1041913/150‑1 (MQ=255)
                                                             aatGAAGAATAATCCCTCCCTGGAAGATAATTGTAAAAAACAACAGCATAAGAATTAATCTTAGGATAAATTTTTATTTATCATGACCTTTTGAACGCTGAAAAGTAGCGCTCTGCAAAGTAAACCCCGCTATAGTTATGCTATGCAttt                                                                                     <  2:402976/150‑1 (MQ=255)
                                                                  agaaTAATCCCTCCCTGGAAGATAATTGTAAAAAACAACAGCATAAGAATTAATCTTAGGATAAATTTTTATTTATCATGACCTTTTGAACGCTGAAAAGTAGCGCTCTGCAAAGTAAACCCCGCTATAGTTATGCTATGCATTTGTCttt                                                                               <  1:236339/151‑1 (MQ=255)
                                                                  agaaTAATCCCTCCCTGGAAGATAATTGTAAAAAACAACAGCATAAGAATTAATCTTAGGATAAATTTTTATTTATCATGACCTTTTGAACGCTGAAAAGTAGCGCTCTGCAAAGTAAACCCCGCTATAGTTATGCTATGCATTTGTCttt                                                                               >  2:342805/1‑151 (MQ=255)
                                                                  agaaTAATCCCTCCCTGGAAGATAATTGTAAAAAACAACAGCATAAGAATTAATCTTAGGATAAATTTTTATTTATCATGACCTTTTGAACGCTGAAAAGTAGCGCTCTGCAAAGTAAACCCCGCTATAGTTATGCTATGCATTTGTCttt                                                                               >  1:1273184/1‑151 (MQ=255)
                                                                   gaaTAATCCCTCCCTGGAAGATAATTGTAAAAAACAACAGCATAAGAATTAATCTTAGGATAAATTTTTATTTATCATGACCTTTTGAACGCTGAAAAGTAGCGCTCTGCAAAGTAAACCCCGCTATAGTTATGCTATGCATTTGTCttt                                                                               >  1:256609/1‑150 (MQ=255)
                                                                    aataatCCCTCCCTGGAAGATAATTGTAAAAAACAACAGCATAAGAATTAATCTTAGGATAAATTTTTATTTATCATGACCTTTTGAACGCTGAAAAGTAGCGCTCTGCAAAGTAAACCCCGCTATAGTTATGCTATGCATTTGTCTTTaa                                                                             <  2:471361/151‑1 (MQ=255)
                                                                       aatCCCTCCCTGGAAGATAATTGTAAAAAACAACAGCATAAGAATTAATCTTAGGATAAATTTTTATTTATCATGACCTTTTGAACGCTGAAAAGTAGCGCTCTGCAAAGTAAACCCCGCTATAGTTATGCTATGCATTTGTCTTTAATg                                                                           <  3:341049/150‑1 (MQ=255)
                                                                              ccctGGAAGATAATTGTAAAAAACAACAGCATAAGAATTAATCTTAGGATAAATTTTTATTTATCATGACCTTTTGAACGCTGAAAAGTAGCGCTCTGCAAAGTAAACCCCGCTATAGTTATGCTATGCATTTGTCTTTAATGATATCTCg                                                                   <  1:612768/151‑1 (MQ=255)
                                                                               cctGGAAGATAATTGTAAAAAACAACAGCATAAGAATTAATCTTAGGATAAATTTTTATTTATCATGACCTTTTGAACGCTGAAAAGTAGCGCTCTGCAAAGTAAACCCCGCTATAGTTATGCTATGCATTTGTCTTTAATGATATCTCGt                                                                  <  1:1060053/151‑1 (MQ=255)
                                                                               cctGGAAGATAATTGTAAAAAACAACAGCATAAGAATTAATCTTAGGATAAATTTTTATTTATCATGACCTTTTGAACGCTGAAAAGTAGCGCTCTGCAAAGTAAACCCCGCTATAGTTATGCTATGCATTTGTCTTTAATGATATCTCGt                                                                  <  1:39552/151‑1 (MQ=255)
                                                                                  ggAAGATAATTGTAAAAAACAACAGCATAAGAATTAATCTTAGGATAAATTTTTATTTATCATGACCTTTTGAACGCTGAAAAGTAGCGCTCTGCAAAGTAAACCCCGCTATAGTTATGCTATGCATTTGTCTTTAATGATATCTCGTc                                                                 <  1:861382/149‑1 (MQ=255)
                                                                                     aGATAATTGTAAAAAACAACAGCATAAGAATTAATCTTAGGATAAATTTTTATTTATCATGACCTTTTGAACGCTGAAAAGTAGCGCTCTGCAAAGTAAACCCCGCTATAGTTATGCTATGCATTTGTCTTTAATGATATCTCGTCATtat                                                            <  1:176090/151‑1 (MQ=255)
                                                                                      gATAATTGTAAAAAACAACAGCATAAGAATTAATCTTAGGATAAATTTTTATTTATCATGACCTTTTGAACGCTGAAAAGTAGCGCTCTGCAAAGTAAACCCCGCTATAGTTATGCTATGCATTTGTCTTTAATGATATCTCGTCATtata                                                           <  1:585334/151‑1 (MQ=255)
                                                                                       aTAATTGTAAAAAACAACAGCATAAGAATTAATCTTAGGATAAATTTTTATTTATCATGACCTTTTGAACGCTGAAAAGTAGCGCTCTGCAAAGTAAACCCCGCTATAGTTATGCTATGCATTTGTCTTTAATGATATCTCGTCATTatat                                                          <  1:153800/151‑1 (MQ=255)
                                                                                        tAATTGTAAAAAACAACAGCATAAGAATTAATCTTAGGATAAATTTTTATTTATCATGACCTTTTGAACGCTGAAAAGTAGCGCTCTGCAAAGTAAACCCCGCTATAGTTATGCTATGCATTTGTCTTTAATGATATCTCGTCATTATAtt                                                         >  2:1076389/1‑151 (MQ=255)
                                                                                         aaTTGTAAAAAACAACAGCATAAGAATTAATCTTAGGATAAATTTTTATTTATCATGACCTTTTGAACGCTGAAAAGTAGCGCTCTGCAAAGTAAACCCCGCTATAGTTATGCTATGCATTTGTCTTTAATGATATCTCGTCATTATAtt                                                         >  1:930463/1‑150 (MQ=255)
                                                                                          aTTGTAAAAAACAACAGCATAAGAATTAATCTTAGGATAAATTTTTATTTATCATGACCTTTTGAACGCTGAAAAGTAGCGCTCTGCAAAGTAAACCCCGCTATAGTTATGCTATGCATTTGTCTTTAATGATATCTCGTCATTATATTa                                                        >  2:306075/1‑150 (MQ=255)
                                                                                           ttGTAAAAAACAACAGCATAAGAATTAATCTTAGGATAAATTTTTATTTATCATGACCTTTTGAACGCTGAAAAGTAGCGCTCTGCAAAGTAAACCCCGCTATAGTTATGCTATGCATTTGTCTTTAATGATATCTCGTCATTATATTAAc                                                      >  1:267806/1‑151 (MQ=255)
                                                                                           ttGTAAAAAACAACAGCATAAGAATTAATCTTAGGATAAATTTTTATTTATCATGACCTTTTGAACGCTGAAAAGGAGCGCTCTGCAAAGTAAACCCCGCTATAGATATGCTATGCATTTGTCTTTAATGATATCTCGTCATTATATTaa                                                       >  2:126178/1‑150 (MQ=255)
                                                                                                   aacaacAGCATAAGAATTAATCTTAGGATAAATTTTTATTTATCATGACCTTTTGAACGCTGAAAAGTAGCGCTCTGCAAAGTAAACCCCGCTATAGTTATGCTATGCATTTGTCTTTAATGATATCTCGTCATTATATTAACAGGATGa                                               >  2:628444/1‑150 (MQ=255)
                                                                                                      aacaGCATAAGAATTAATCTTAGGATAAATTTTTATTTATCATGACCTTTTGAACGCTGAAAAGTAGCGCTCTGCAAAGTAAACCCCGCTATAGTTATGCTATGCATTTGTCTTTAATGATATCTCGTCATTATATTAACAGGATGAAAtt                                           >  2:2912/1‑151 (MQ=255)
                                                                                                        caGCATAAGAATTAATCTTAGGATAAATTTTTATTTATCATGACCTTTTGAACGCTGAAAAGTAGCGCTCTGCAAAGTAAACCCCGCTATAGTTATGCTATGCATTTGTCTTTAATGATATCTCGTCATTATATTAACAGGATGAAATTAt                                         >  2:449525/1‑151 (MQ=255)
                                                                                                            aTAAGAATTAATCTTAGGATAAATTTTTATTTATCATGACCTTTTGAACGCTGAAAAGTAGCGCTCTGCAAAGTAAACCCCGCTATAGTTATGCTATGCATTTGTCTTTAATGATATCTCATCATTATATTAACAGGATGAAATTATCAtt                                     >  2:1177779/1‑151 (MQ=255)
                                                                                                                gAATTAATCTTAGGATAAATTTTTATTTATCATGACCTTTTGAACGCTGAAAAGTAGCGCTCTGCAAAGTAAACCCCGCTATAGTTATGCTATGCATTTGTCTTTAATGATATCTCGTCATTATATTAACAGGATGAAATTATCATTAATg                                 >  2:933946/1‑151 (MQ=255)
                                                                                                                 aaTTAATCTTAGGATAAATTTTTATTTATCATGACCTTTTGAACGCTGAAAAGTAGCGCTCTGCAAAGTAAACCCCGCTATAGTTATGCTATGCATTTGTCTTTAATGATATCTCGTCATTATATTAACAGGATGAAATTATCATTAATGc                                <  1:335854/151‑1 (MQ=255)
                                                                                                                 aaTTAATCTTAGGATAAATTTTTATTTATCATGACCTTTTGAACGCTGAAAAGTAGCGCTCTGCAAAGTAAACCCCGCTATAGTTATGCTATGCATTTGTCTTTAATGATATCTCGTCATTATATTAACAGGAGGAAATTATCAGTAATg                                 <  1:1190281/150‑1 (MQ=255)
                                                                                                                   ttAATCTTAGGATAAATTTTTATTTATCATGACCTTTTGAACGCTGAAAAGTAGCGCTCTGCAAAGTAAACCCCGCTATAGTTATGCTATGCATTTGTCTTTAATGATATCTCGTCATTATATTAACAGGATGAAATTATCATTAATGCat                              >  1:621040/1‑151 (MQ=255)
                                                                                                                       tCTTAGGATAAATTTTTATTTATCATGACCTTTTGAACGCTGAAAAGTAGCGCTCTGCAAAGTAAACCCCGCTATAGTTATGCTATGCATTTGTCTTTAATGATATCTCGTCATTATATTAACAGGATGAAATTATCATTAATGCATAttt                          >  1:392762/1‑151 (MQ=255)
                                                                                                                          tAGGATAAATTTTTATTTATCATGACCTTTTGAACGCTGAAAAGTAGCGCTCTGCAAAGTAAACCCCGCTATAGTTATGCTATGCATTTGTCTTTAATGATATCTCGTCATTATATTAACAGGATGAAATTATCATTAATGCATATTTCa                        >  3:288724/1‑150 (MQ=255)
                                                                                                                          tAGGATAAATTTTTATTTATCATGACCTTTTGAACGCTGAAAAGTAGCGCTCTGCAAAGTAAACCCCGCTATAGTTATGCTATGCATTTGTCTTTAATGATATCTCGTCATTATATTAACAGGATGAAATTATCATTAATGCATATTTCa                        >  4:437223/1‑150 (MQ=255)
                                                                                                                           aGGATAAATTTTTATTTATCATGACCTTTTGAACGCTGAAAAGTAGCGCTCTGCAAAGTAAACCCCGCTATAGTTATGCTATGCATTTGTCTTTAATGATATCTCGTCATTATATTAACAGGATGAAACTATCATTAATGCATATTTCaa                       <  1:958395/150‑1 (MQ=255)
                                                                                                                            ggATAAATTTTTATTTATCATGACCTTTTGAACGCTGAAAAGTAGCGCTCTGCAAAGTAAACCCCGCTATAGTTATGCTATGCATTTGTCTTTAATGATATCTCGTCATTATATTAACAGGATGAAATTATCATTAATGCATATTTCAata                     <  1:1096753/151‑1 (MQ=255)
                                                                                                                             gATAAATTTTTATTTATCATGACCTTTTGAACGCTGAAAAGTAGCGCTCTGCAAAGTAAACCCCGCTATAGTTATGCTATGCATTTGTCTTTAATGATATCTCGTCATTATATTAACAGGATGAAATTATCATTAATGCATATTTCAatat                    >  1:693538/1‑151 (MQ=255)
                                                                                                                              aTAAATTTTTATTTATCATGACCTTTTGAACGCTGAAAAGTAGCGCTCTGCAAAGTAAACCCCGCTATAGTTATGCTATGCATTTGTCTTTAATGATATCTCGTCATTATATTAACAGGATGAAATTATCATTAATGCATATTTCAATAtt                   <  1:332955/151‑1 (MQ=255)
                                                                                                                               tAAATTTTTATTTATCATGACCTTTTGAACGCTGAAAAGTAGCGCTCTGCAAAGTAAACCCCGCTATAGTTATGCTATGCATTTGTCTTTAATGATATCTCGTCATTATATTAACAGGATGAAATTATCATTAATGCATATTTCAATAtt                   >  1:1107508/1‑150 (MQ=255)
                                                                                                                                aaaTTTTTATTTATCATGACCTTTTGAACGCTGAAAAGTAGCGCTCTGCAAAGTAAACCCCGCTATAGTTATGCTATGCATTTGTCTTTAATGATATCTCGTCATTATATTAACAGGATGAAATTATCATTAATGCATATTTCAATAtt                   >  3:114051/1‑149 (MQ=255)
                                                                                                                                  aTTTTTATTTATCATGACCTTTTGAACGCTGAAAAGTAGCGCTCTGCAAAGTAAACCCCGCTATAGTTATGCTATGCATTTGTCTTTAATGATATCTCGTCATTATATTAACAGGATGAAATTATCATTAATGCATATTTCAATATTAGc                >  2:31475/1‑150 (MQ=255)
                                                                                                                                      ttatttatCATGACCTTTTGAACGCTGAAAAGTAGCGCTCTGCAAAGTAAACCCCGCTATAGTTATGCTATGCATTTGTCTTTAATGATATCTCGTCATTATATTAACAGGATGAAATTATCATTAATGCATATTTCAATATTAGCAg              >  2:514937/1‑148 (MQ=255)
                                                                                                                                          ttatCATGACCTTTTGAACGCTGAAAAGTAGCGCTCTGCAAAGTAAACCCCGCTATAGTTATGCTATGCATTTGTCTTTAATGATATCTCGTCATTATATTAACAGGATGAAATTATCATTAATGCATATTTCAATATTAGCAGGGATAc        <  1:901600/150‑1 (MQ=255)
                                                                                                                                            atCATGACCTTTTGAACGCTGAAAAGTAGCGCTCTGCAAAGTAAACCCCGCTATAGTTATGCTATGCATTTGTCTTTAATGATATCTCGTCATTATATTAACAGGATGAAATTATCATTAATGCATATTTCAATATTAGCAGGGATACCTg     >  4:134508/1‑151 (MQ=255)
                                                                                                                                              cATGACCTTTTGAACGCTGAAAAGTAGCGCTCTGCAAAGTAAACCCCGCTATAGTTATGCTATGCATTTGTCTTTAATGATATCTCGTCATTATATTAACAGGATGAAATTATCATTAATGCATATTTCAATATTAGCAGGGATACCTgag   <  2:251099/151‑1 (MQ=255)
                                                                                                                                               aTGACCTTTTGAACGCTGAAAAGTAGCGCTCTGCAAAGTAAACCCCGCTATAGTTATGCTATGCATTTGTCTTTAATGATATCTCGTCATTATATTAACAGGATGAAATTATCATTAATGCATATTTCAATATTAGCAGGGATACCTgagg  <  2:321154/151‑1 (MQ=255)
                                                                                                                                               aTGACCTTTTGAACGCTGAAAAGTAGCGCTCTGCAAAGTAAACCCCGCTATAGTTATGCTATGCATTTGTCTTTAATGATATCTCGTCATTATATTAACAGGATGAAATTATCATTAATGCATATTTCAATATTAGCAGGGATACCTgagg  >  2:157413/1‑151 (MQ=255)
                                                                                                                                                  |                                                                                                                                                   
ATAATAATACTTATATGTTCGCTGATTTTAAGCACCGAGACTATCCGGTCTTTTACCAAATAATGAAGAATAATCCCTCCCTGGAAGATAATTGTAAAAAACAACAGCATAAGAATTAATCTTAGGATAAATTTTTATTTATCATGGCCTTTTGAACGCTGAAAAGTAGCGCTCTGCAAAGTAAACCCCGCTATAGTTATGCTATGCATTTGTCTTTAATGATATCTCGTCATTATATTAACAGGATGAAATTATCATTAATGCATATTTCAATATTAGCAGGGATACCTGAGG  >  NC_000913/3634539‑3634832

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A